CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = S1813S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31813S1813SS2631SsyntcTtcC6586390.9711258156-8158
ORF1ab/nsp31813S1813SS2631SsyntcTtcA658130.01975688156-8158
ORF1ab/nsp31813S1813SS2631SsyntcTtcG65860.009118548156-8158

Details of the mutation S1813S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31813S1813StcTtcC639658All0.000122
ORF1ab/nsp31813S1813StcTtcA13658All0.000002
ORF1ab/nsp31813S1813StcTtcG6658All0.000001
ORF1ab/nsp31813S1813StcTtcC176176B.1.5680.195556
ORF1ab/nsp31813S1813StcTtcC119119AY.410.034979
ORF1ab/nsp31813S1813StcTtcC8787AY.430.000385
ORF1ab/nsp31813S1813StcTtcC2936AY.40.000045
ORF1ab/nsp31813S1813StcTtcA736AY.40.000011
ORF1ab/nsp31813S1813StcTtcC2328B.1.1.70.000021
ORF1ab/nsp31813S1813StcTtcA328B.1.1.70.000003
ORF1ab/nsp31813S1813StcTtcG228B.1.1.70.000002
ORF1ab/nsp31813S1813StcTtcC1516B.1.20.000132
ORF1ab/nsp31813S1813StcTtcA116B.1.20.000009
ORF1ab/nsp31813S1813StcTtcC1616B.1.617.20.00006
ORF1ab/nsp31813S1813StcTtcC1515AY.340.001454
ORF1ab/nsp31813S1813StcTtcC1515B.1.5250.001697
ORF1ab/nsp31813S1813StcTtcC1414B.10.000128
ORF1ab/nsp31813S1813StcTtcC1212P.1.140.000574
ORF1ab/nsp31813S1813StcTtcC88AY.1020.000212
ORF1ab/nsp31813S1813StcTtcC77AY.200.000272
ORF1ab/nsp31813S1813StcTtcC77AY.260.000198
ORF1ab/nsp31813S1813StcTtcC77AY.4.20.000152
ORF1ab/nsp31813S1813StcTtcC55AY.1030.000031
ORF1ab/nsp31813S1813StcTtcC45AY.440.000024
ORF1ab/nsp31813S1813StcTtcG15AY.440.000006
ORF1ab/nsp31813S1813StcTtcC55AY.560.008026
ORF1ab/nsp31813S1813StcTtcC55AY.740.000578
ORF1ab/nsp31813S1813StcTtcC55B.1.10.000091
ORF1ab/nsp31813S1813StcTtcG34AY.750.000168
ORF1ab/nsp31813S1813StcTtcC14AY.750.000056
ORF1ab/nsp31813S1813StcTtcC33AY.290.000047
ORF1ab/nsp31813S1813StcTtcC33AY.460.000312
ORF1ab/nsp31813S1813StcTtcC33B.1.177.860.00055
ORF1ab/nsp31813S1813StcTtcC33B.1.4290.000071
ORF1ab/nsp31813S1813StcTtcC22A.10.000564
ORF1ab/nsp31813S1813StcTtcC22AY.250.000012
ORF1ab/nsp31813S1813StcTtcC22AY.380.000999
ORF1ab/nsp31813S1813StcTtcC22AY.420.00008
ORF1ab/nsp31813S1813StcTtcC22AY.610.00021
ORF1ab/nsp31813S1813StcTtcC22B.1.1.5190.000079
ORF1ab/nsp31813S1813StcTtcC22B.1.1770.000026
ORF1ab/nsp31813S1813StcTtcC22B.1.177.600.000437
ORF1ab/nsp31813S1813StcTtcC22B.1.2580.000133
ORF1ab/nsp31813S1813StcTtcC22B.1.360.000292
ORF1ab/nsp31813S1813StcTtcC22R.10.00018
ORF1ab/nsp31813S1813StcTtcC11A0.000387
ORF1ab/nsp31813S1813StcTtcC11AY.1000.000046
ORF1ab/nsp31813S1813StcTtcC11AY.1170.000085
ORF1ab/nsp31813S1813StcTtcC11AY.1180.000063
ORF1ab/nsp31813S1813StcTtcC11AY.1200.000037
ORF1ab/nsp31813S1813StcTtcC11AY.270.000065
ORF1ab/nsp31813S1813StcTtcC11AY.370.000316
ORF1ab/nsp31813S1813StcTtcA11AY.39.10.00004
ORF1ab/nsp31813S1813StcTtcC11AY.450.000122
ORF1ab/nsp31813S1813StcTtcC11AY.46.40.000165
ORF1ab/nsp31813S1813StcTtcC11AY.60.000041
ORF1ab/nsp31813S1813StcTtcC11AY.620.000436
ORF1ab/nsp31813S1813StcTtcC11AY.7.10.000113
ORF1ab/nsp31813S1813StcTtcC11AY.700.000209
ORF1ab/nsp31813S1813StcTtcC11AY.75.10.00018
ORF1ab/nsp31813S1813StcTtcC11AY.790.001211
ORF1ab/nsp31813S1813StcTtcC11AY.90.000068
ORF1ab/nsp31813S1813StcTtcC11AY.9.10.000084
ORF1ab/nsp31813S1813StcTtcC11AY.9.20.000037
ORF1ab/nsp31813S1813StcTtcC11AY.980.000079
ORF1ab/nsp31813S1813StcTtcC11B.1.1.3170.000412
ORF1ab/nsp31813S1813StcTtcA11B.1.1.3260.001761
ORF1ab/nsp31813S1813StcTtcC11B.1.1.330.000421
ORF1ab/nsp31813S1813StcTtcC11B.1.1.3690.000446
ORF1ab/nsp31813S1813StcTtcC11B.1.1.4320.001266
ORF1ab/nsp31813S1813StcTtcC11B.1.1600.000031
ORF1ab/nsp31813S1813StcTtcC11B.1.2410.000812
ORF1ab/nsp31813S1813StcTtcC11B.1.5950.000261
ORF1ab/nsp31813S1813StcTtcC11B.1.6280.000352
ORF1ab/nsp31813S1813StcTtcC11B.1.6330.041667
ORF1ab/nsp31813S1813StcTtcC11D.20.000075
ORF1ab/nsp31813S1813StcTtcC11P.10.000016