CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = S1813P

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31813S1813PS2631PnonsynTctCct81081018156-8158

Details of the mutation S1813P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31813S1813PTctCct810810All0.000155
ORF1ab/nsp31813S1813PTctCct323323P.1.170.052248
ORF1ab/nsp31813S1813PTctCct8888B.1.2580.005856
ORF1ab/nsp31813S1813PTctCct7575B.1.1.70.000067
ORF1ab/nsp31813S1813PTctCct6262AY.30.000617
ORF1ab/nsp31813S1813PTctCct6161B.1.258.240.655914
ORF1ab/nsp31813S1813PTctCct2525P.10.000394
ORF1ab/nsp31813S1813PTctCct1818B.1.1600.000561
ORF1ab/nsp31813S1813PTctCct1414AY.250.000084
ORF1ab/nsp31813S1813PTctCct1313AY.1030.000081
ORF1ab/nsp31813S1813PTctCct1212B.10.00011
ORF1ab/nsp31813S1813PTctCct1010B.1.177.540.006064
ORF1ab/nsp31813S1813PTctCct99AY.40.000014
ORF1ab/nsp31813S1813PTctCct88B.1.20.00007
ORF1ab/nsp31813S1813PTctCct88B.1.4290.000188
ORF1ab/nsp31813S1813PTctCct66AY.430.000027
ORF1ab/nsp31813S1813PTctCct66B.1.617.20.000023
ORF1ab/nsp31813S1813PTctCct66C.160.006363
ORF1ab/nsp31813S1813PTctCct55B.1.6210.000443
ORF1ab/nsp31813S1813PTctCct44AY.290.000063
ORF1ab/nsp31813S1813PTctCct44AY.440.000024
ORF1ab/nsp31813S1813PTctCct44B.1.10.000073
ORF1ab/nsp31813S1813PTctCct44B.1.3510.000119
ORF1ab/nsp31813S1813PTctCct33AY.1020.00008
ORF1ab/nsp31813S1813PTctCct33AY.260.000085
ORF1ab/nsp31813S1813PTctCct33B0.000383
ORF1ab/nsp31813S1813PTctCct33B.1.4230.030612
ORF1ab/nsp31813S1813PTctCct33B.1.438.10.000322
ORF1ab/nsp31813S1813PTctCct22AY.1130.000285
ORF1ab/nsp31813S1813PTctCct22AY.1200.000074
ORF1ab/nsp31813S1813PTctCct22AY.20.000712
ORF1ab/nsp31813S1813PTctCct22AY.390.000049
ORF1ab/nsp31813S1813PTctCct22AY.50.000041
ORF1ab/nsp31813S1813PTctCct22B.1.5260.000047
ORF1ab/nsp31813S1813PTctCct22R.10.00018
ORF1ab/nsp31813S1813PTctCct11AY.1000.000046
ORF1ab/nsp31813S1813PTctCct11AY.1190.000035
ORF1ab/nsp31813S1813PTctCct11AY.3.10.000085
ORF1ab/nsp31813S1813PTctCct11AY.330.000067
ORF1ab/nsp31813S1813PTctCct11AY.60.000041
ORF1ab/nsp31813S1813PTctCct11AY.740.000116
ORF1ab/nsp31813S1813PTctCct11AY.9.20.000037
ORF1ab/nsp31813S1813PTctCct11B.1.1.280.000311
ORF1ab/nsp31813S1813PTctCct11B.1.1.500.000679
ORF1ab/nsp31813S1813PTctCct11B.1.1.740.00431
ORF1ab/nsp31813S1813PTctCct11B.1.2430.00007
ORF1ab/nsp31813S1813PTctCct11B.1.3960.000706
ORF1ab/nsp31813S1813PTctCct11D.20.000075
ORF1ab/nsp31813S1813PTctCct11P.1.17.10.000875
ORF1ab/nsp31813S1813PTctCct11Q.10.000126
ORF1ab/nsp31813S1813PTctCct11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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