CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = S1813F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31813S1813FS2631FnonsyntCttTt71271218156-8158

Details of the mutation S1813F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31813S1813FtCttTt712712All0.000136
ORF1ab/nsp31813S1813FtCttTt224224B.1.1.70.000201
ORF1ab/nsp31813S1813FtCttTt127127AD.20.027808
ORF1ab/nsp31813S1813FtCttTt104104AY.40.000162
ORF1ab/nsp31813S1813FtCttTt3434B.1.617.20.000128
ORF1ab/nsp31813S1813FtCttTt2323C.370.002669
ORF1ab/nsp31813S1813FtCttTt2020AY.560.032103
ORF1ab/nsp31813S1813FtCttTt1212AY.39.10.000475
ORF1ab/nsp31813S1813FtCttTt99B.1.6280.003171
ORF1ab/nsp31813S1813FtCttTt88AY.430.000035
ORF1ab/nsp31813S1813FtCttTt77AY.90.000473
ORF1ab/nsp31813S1813FtCttTt77B.10.000064
ORF1ab/nsp31813S1813FtCttTt77B.1.20.000062
ORF1ab/nsp31813S1813FtCttTt66AY.1030.000037
ORF1ab/nsp31813S1813FtCttTt66AY.30.00006
ORF1ab/nsp31813S1813FtCttTt66AY.440.000037
ORF1ab/nsp31813S1813FtCttTt66B.1.10.000109
ORF1ab/nsp31813S1813FtCttTt66B.1.1.4340.002091
ORF1ab/nsp31813S1813FtCttTt66Q.20.003681
ORF1ab/nsp31813S1813FtCttTt55AY.50.000103
ORF1ab/nsp31813S1813FtCttTt55B.1.1770.000066
ORF1ab/nsp31813S1813FtCttTt44AY.290.000063
ORF1ab/nsp31813S1813FtCttTt44B.1.1600.000125
ORF1ab/nsp31813S1813FtCttTt44B.1.6210.000354
ORF1ab/nsp31813S1813FtCttTt44B.1.6370.000292
ORF1ab/nsp31813S1813FtCttTt33AY.1020.00008
ORF1ab/nsp31813S1813FtCttTt33AY.250.000018
ORF1ab/nsp31813S1813FtCttTt33AY.46.60.000217
ORF1ab/nsp31813S1813FtCttTt33AY.470.000093
ORF1ab/nsp31813S1813FtCttTt33B.1.5960.000261
ORF1ab/nsp31813S1813FtCttTt22AY.4.20.000043
ORF1ab/nsp31813S1813FtCttTt22AY.420.00008
ORF1ab/nsp31813S1813FtCttTt22AY.450.000243
ORF1ab/nsp31813S1813FtCttTt22AY.700.000417
ORF1ab/nsp31813S1813FtCttTt22B.1.4290.000047
ORF1ab/nsp31813S1813FtCttTt22B.1.4500.022727
ORF1ab/nsp31813S1813FtCttTt22B.1.5650.001621
ORF1ab/nsp31813S1813FtCttTt22P.60.006289
ORF1ab/nsp31813S1813FtCttTt11A.20.000662
ORF1ab/nsp31813S1813FtCttTt11AY.1060.000335
ORF1ab/nsp31813S1813FtCttTt11AY.1090.00074
ORF1ab/nsp31813S1813FtCttTt11AY.1170.000085
ORF1ab/nsp31813S1813FtCttTt11AY.1180.000063
ORF1ab/nsp31813S1813FtCttTt11AY.1190.000035
ORF1ab/nsp31813S1813FtCttTt11AY.200.000039
ORF1ab/nsp31813S1813FtCttTt11AY.260.000028
ORF1ab/nsp31813S1813FtCttTt11AY.34.10.00051
ORF1ab/nsp31813S1813FtCttTt11AY.390.000025
ORF1ab/nsp31813S1813FtCttTt11AY.670.000464
ORF1ab/nsp31813S1813FtCttTt11AY.750.000056
ORF1ab/nsp31813S1813FtCttTt11AY.870.000833
ORF1ab/nsp31813S1813FtCttTt11B0.000128
ORF1ab/nsp31813S1813FtCttTt11B.1.1.2070.001182
ORF1ab/nsp31813S1813FtCttTt11B.1.1.2580.003257
ORF1ab/nsp31813S1813FtCttTt11B.1.1.40.002976
ORF1ab/nsp31813S1813FtCttTt11B.1.1.4640.001473
ORF1ab/nsp31813S1813FtCttTt11B.1.177.60.000977
ORF1ab/nsp31813S1813FtCttTt11B.1.177.600.000218
ORF1ab/nsp31813S1813FtCttTt11B.1.177.650.000665
ORF1ab/nsp31813S1813FtCttTt11B.1.177.820.000477
ORF1ab/nsp31813S1813FtCttTt11B.1.2060.000816
ORF1ab/nsp31813S1813FtCttTt11B.1.2430.00007
ORF1ab/nsp31813S1813FtCttTt11B.1.2580.000067
ORF1ab/nsp31813S1813FtCttTt11B.1.258.170.000104
ORF1ab/nsp31813S1813FtCttTt11B.1.3500.002933
ORF1ab/nsp31813S1813FtCttTt11B.1.3610.001289
ORF1ab/nsp31813S1813FtCttTt11B.1.3810.007812
ORF1ab/nsp31813S1813FtCttTt11B.1.5260.000024
ORF1ab/nsp31813S1813FtCttTt11B.450.003831
ORF1ab/nsp31813S1813FtCttTt11C.37.10.002618
ORF1ab/nsp31813S1813FtCttTt11D.20.000075
ORF1ab/nsp31813S1813FtCttTt11P.10.000016
ORF1ab/nsp31813S1813FtCttTt11P.1.140.000048
ORF1ab/nsp31813S1813FtCttTt11P.20.000187
ORF1ab/nsp31813S1813FtCttTt11Q.60.006623

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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