CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = S1734S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31734S1734SS2552SsyntcAtcG4674100.8779447919-7921
ORF1ab/nsp31734S1734SS2552SsyntcAtcC467320.06852257919-7921
ORF1ab/nsp31734S1734SS2552SsyntcAtcT467250.05353327919-7921

Details of the mutation S1734S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31734S1734StcAtcG410467All0.000078
ORF1ab/nsp31734S1734StcAtcC32467All0.000006
ORF1ab/nsp31734S1734StcAtcT25467All0.000005
ORF1ab/nsp31734S1734StcAtcG138152B.1.1.70.000124
ORF1ab/nsp31734S1734StcAtcT14152B.1.1.70.000013
ORF1ab/nsp31734S1734StcAtcG3939P.1.170.006309
ORF1ab/nsp31734S1734StcAtcG2222B.10.000202
ORF1ab/nsp31734S1734StcAtcG2020AY.1030.000124
ORF1ab/nsp31734S1734StcAtcG1919AY.250.000114
ORF1ab/nsp31734S1734StcAtcG1919AY.440.000116
ORF1ab/nsp31734S1734StcAtcG1717AY.1180.001065
ORF1ab/nsp31734S1734StcAtcG814B.1.20.00007
ORF1ab/nsp31734S1734StcAtcC614B.1.20.000053
ORF1ab/nsp31734S1734StcAtcG1213AY.30.000119
ORF1ab/nsp31734S1734StcAtcC113AY.30.00001
ORF1ab/nsp31734S1734StcAtcG1010AY.260.000283
ORF1ab/nsp31734S1734StcAtcG1010AY.40.000016
ORF1ab/nsp31734S1734StcAtcG810AY.430.000035
ORF1ab/nsp31734S1734StcAtcC210AY.430.000009
ORF1ab/nsp31734S1734StcAtcC68AY.390.000148
ORF1ab/nsp31734S1734StcAtcG28AY.390.000049
ORF1ab/nsp31734S1734StcAtcG48B.1.10.000073
ORF1ab/nsp31734S1734StcAtcC48B.1.10.000073
ORF1ab/nsp31734S1734StcAtcG68B.1.617.20.000023
ORF1ab/nsp31734S1734StcAtcT28B.1.617.20.000008
ORF1ab/nsp31734S1734StcAtcG67AY.1020.000159
ORF1ab/nsp31734S1734StcAtcC17AY.1020.000027
ORF1ab/nsp31734S1734StcAtcG77B.1.177.520.012302
ORF1ab/nsp31734S1734StcAtcC77B.1.3510.000208
ORF1ab/nsp31734S1734StcAtcG66AY.1040.011905
ORF1ab/nsp31734S1734StcAtcG66AY.330.000401
ORF1ab/nsp31734S1734StcAtcG55AY.340.000485
ORF1ab/nsp31734S1734StcAtcG55B.1.2430.000348
ORF1ab/nsp31734S1734StcAtcG44AY.290.000063
ORF1ab/nsp31734S1734StcAtcT44B.1.36.290.002069
ORF1ab/nsp31734S1734StcAtcT34R.10.00027
ORF1ab/nsp31734S1734StcAtcG14R.10.00009
ORF1ab/nsp31734S1734StcAtcG33P.10.000047
ORF1ab/nsp31734S1734StcAtcG220.111111
ORF1ab/nsp31734S1734StcAtcG22AY.610.00021
ORF1ab/nsp31734S1734StcAtcG22B.1.1600.000062
ORF1ab/nsp31734S1734StcAtcG22B.1.1770.000026
ORF1ab/nsp31734S1734StcAtcG22B.1.36.180.00084
ORF1ab/nsp31734S1734StcAtcG22B.1.5750.000607
ORF1ab/nsp31734S1734StcAtcG11A.2.40.003367
ORF1ab/nsp31734S1734StcAtcG11AY.1000.000046
ORF1ab/nsp31734S1734StcAtcG11AY.1190.000035
ORF1ab/nsp31734S1734StcAtcT11AY.1200.000037
ORF1ab/nsp31734S1734StcAtcG11AY.1210.000135
ORF1ab/nsp31734S1734StcAtcG11AY.300.000396
ORF1ab/nsp31734S1734StcAtcG11AY.4.20.000022
ORF1ab/nsp31734S1734StcAtcG11AY.470.000031
ORF1ab/nsp31734S1734StcAtcG11AY.480.000465
ORF1ab/nsp31734S1734StcAtcG11AY.540.000095
ORF1ab/nsp31734S1734StcAtcG11AY.7.10.000113
ORF1ab/nsp31734S1734StcAtcG11AY.750.000056
ORF1ab/nsp31734S1734StcAtcC11AY.99.20.000092
ORF1ab/nsp31734S1734StcAtcG11B.1.1.3430.020833
ORF1ab/nsp31734S1734StcAtcG11B.1.1.4340.000349
ORF1ab/nsp31734S1734StcAtcG11B.1.177.650.000665
ORF1ab/nsp31734S1734StcAtcG11B.1.2150.009615
ORF1ab/nsp31734S1734StcAtcC11B.1.2180.005155
ORF1ab/nsp31734S1734StcAtcG11B.1.2580.000067
ORF1ab/nsp31734S1734StcAtcG11B.1.3320.003497
ORF1ab/nsp31734S1734StcAtcG11B.1.360.000146
ORF1ab/nsp31734S1734StcAtcG11B.1.3610.001289
ORF1ab/nsp31734S1734StcAtcG11B.1.5960.000087
ORF1ab/nsp31734S1734StcAtcC11B.1.617.10.000129
ORF1ab/nsp31734S1734StcAtcC11B.1.6210.000089
ORF1ab/nsp31734S1734StcAtcT11C.350.000774
ORF1ab/nsp31734S1734StcAtcC11P.1.140.000048
ORF1ab/nsp31734S1734StcAtcG11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.