CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = S1717A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31717S1717AS2535AnonsynTcaGca19170.8947377868-7870
ORF1ab/nsp31717S1717AS2535AnonsynTcAGcG1910.05263167868-7870
ORF1ab/nsp31717S1717AS2535AnonsynTcAGcT1910.05263167868-7870

Details of the mutation S1717A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31717S1717ATcaGca1719All0.000003
ORF1ab/nsp31717S1717ATcAGcT119All0
ORF1ab/nsp31717S1717ATcAGcG119All0
ORF1ab/nsp31717S1717ATcaGca77B.1.1.70.000006
ORF1ab/nsp31717S1717ATcaGca13B.1.10.000018
ORF1ab/nsp31717S1717ATcAGcT13B.1.10.000018
ORF1ab/nsp31717S1717ATcAGcG13B.1.10.000018
ORF1ab/nsp31717S1717ATcaGca22AY.210.003795
ORF1ab/nsp31717S1717ATcaGca11AY.200.000039
ORF1ab/nsp31717S1717ATcaGca11AY.230.00007
ORF1ab/nsp31717S1717ATcaGca11AY.440.000006
ORF1ab/nsp31717S1717ATcaGca11AY.850.000427
ORF1ab/nsp31717S1717ATcaGca11B.1.2430.00007
ORF1ab/nsp31717S1717ATcaGca11P.1.100.000269
ORF1ab/nsp31717S1717ATcaGca11P.20.000187