CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = S1699del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31699S1699delS2517deldelTCT---10010017814-7816

Details of the mutation S1699del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31699S1699delTCT---100100All0.000019
ORF1ab/nsp31699S1699delTCT---4444B.1.1.70.000039
ORF1ab/nsp31699S1699delTCT---88B.1.617.20.00003
ORF1ab/nsp31699S1699delTCT---33B.1.1770.00004
ORF1ab/nsp31699S1699delTCT---220.111111
ORF1ab/nsp31699S1699delTCT---22AY.190.002281
ORF1ab/nsp31699S1699delTCT---22AY.430.000009
ORF1ab/nsp31699S1699delTCT---22AY.46.20.001271
ORF1ab/nsp31699S1699delTCT---22B.10.000018
ORF1ab/nsp31699S1699delTCT---22B.1.1.2360.013793
ORF1ab/nsp31699S1699delTCT---22B.1.177.210.000153
ORF1ab/nsp31699S1699delTCT---22B.1.177.570.000562
ORF1ab/nsp31699S1699delTCT---22B.1.2580.000133
ORF1ab/nsp31699S1699delTCT---11A0.000387
ORF1ab/nsp31699S1699delTCT---11AY.1110.000183
ORF1ab/nsp31699S1699delTCT---11AY.1200.000037
ORF1ab/nsp31699S1699delTCT---11AY.330.000067
ORF1ab/nsp31699S1699delTCT---11AY.440.000006
ORF1ab/nsp31699S1699delTCT---11AY.50.000021
ORF1ab/nsp31699S1699delTCT---11AY.520.000814
ORF1ab/nsp31699S1699delTCT---11AY.60.000041
ORF1ab/nsp31699S1699delTCT---11AY.810.001992
ORF1ab/nsp31699S1699delTCT---11AY.840.000437
ORF1ab/nsp31699S1699delTCT---11AY.90.000068
ORF1ab/nsp31699S1699delTCT---11AY.990.001049
ORF1ab/nsp31699S1699delTCT---11AY.99.10.001553
ORF1ab/nsp31699S1699delTCT---11B.1.10.000018
ORF1ab/nsp31699S1699delTCT---11B.1.177.180.00116
ORF1ab/nsp31699S1699delTCT---11B.1.177.40.000211
ORF1ab/nsp31699S1699delTCT---11B.1.177.60.000977
ORF1ab/nsp31699S1699delTCT---11B.1.177.630.002703
ORF1ab/nsp31699S1699delTCT---11B.1.177.830.001481
ORF1ab/nsp31699S1699delTCT---11B.1.1790.003759
ORF1ab/nsp31699S1699delTCT---11B.1.20.000009
ORF1ab/nsp31699S1699delTCT---11B.1.258.100.011364
ORF1ab/nsp31699S1699delTCT---11B.1.360.000146
ORF1ab/nsp31699S1699delTCT---11B.1.4090.000781
ORF1ab/nsp31699S1699delTCT---11B.1.5610.000397
ORF1ab/nsp31699S1699delTCT---11B.4.40.018868
ORF1ab/nsp31699S1699delTCT---11P.10.000016