CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = S1682S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31682S1682SS2500SsyntcCtcT10510102170.9721227763-7765
ORF1ab/nsp31682S1682SS2500SsyntcCtcA105102590.02464327763-7765
ORF1ab/nsp31682S1682SS2500SsyntcCtcG10510340.003235017763-7765

Details of the mutation S1682S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31682S1682StcCtcT1021710510All0.001954
ORF1ab/nsp31682S1682StcCtcA25910510All0.00005
ORF1ab/nsp31682S1682StcCtcG3410510All0.000007
ORF1ab/nsp31682S1682StcCtcT17641774B.1.1.70.001579
ORF1ab/nsp31682S1682StcCtcG81774B.1.1.70.000007
ORF1ab/nsp31682S1682StcCtcA21774B.1.1.70.000002
ORF1ab/nsp31682S1682StcCtcT11871187AY.440.007225
ORF1ab/nsp31682S1682StcCtcT585594AY.40.000911
ORF1ab/nsp31682S1682StcCtcA5594AY.40.000008
ORF1ab/nsp31682S1682StcCtcG4594AY.40.000006
ORF1ab/nsp31682S1682StcCtcT497499B.1.617.20.001871
ORF1ab/nsp31682S1682StcCtcA2499B.1.617.20.000008
ORF1ab/nsp31682S1682StcCtcT237399AY.250.001426
ORF1ab/nsp31682S1682StcCtcA162399AY.250.000974
ORF1ab/nsp31682S1682StcCtcT352353AY.430.00156
ORF1ab/nsp31682S1682StcCtcA1353AY.430.000004
ORF1ab/nsp31682S1682StcCtcT294294AY.1030.001825
ORF1ab/nsp31682S1682StcCtcT294294B.1.1.5190.011675
ORF1ab/nsp31682S1682StcCtcT282288B.10.002583
ORF1ab/nsp31682S1682StcCtcA4288B.10.000037
ORF1ab/nsp31682S1682StcCtcG2288B.10.000018
ORF1ab/nsp31682S1682StcCtcT272273B.1.20.002395
ORF1ab/nsp31682S1682StcCtcA1273B.1.20.000009
ORF1ab/nsp31682S1682StcCtcT228228B.1.1.500.154786
ORF1ab/nsp31682S1682StcCtcT202202P.70.882096
ORF1ab/nsp31682S1682StcCtcT162162B.1.9.40.993865
ORF1ab/nsp31682S1682StcCtcT158158B.1.90.975309
ORF1ab/nsp31682S1682StcCtcT157157B.1.9.50.892045
ORF1ab/nsp31682S1682StcCtcT156156B.1.5260.003667
ORF1ab/nsp31682S1682StcCtcT144144B.1.360.02101
ORF1ab/nsp31682S1682StcCtcT128129AY.90.008652
ORF1ab/nsp31682S1682StcCtcA1129AY.90.000068
ORF1ab/nsp31682S1682StcCtcT120122P.10.00189
ORF1ab/nsp31682S1682StcCtcG2122P.10.000032
ORF1ab/nsp31682S1682StcCtcT90112B.1.1770.001185
ORF1ab/nsp31682S1682StcCtcA21112B.1.1770.000277
ORF1ab/nsp31682S1682StcCtcG1112B.1.1770.000013
ORF1ab/nsp31682S1682StcCtcT107107AY.950.081431
ORF1ab/nsp31682S1682StcCtcT8993B.1.10.001615
ORF1ab/nsp31682S1682StcCtcA493B.1.10.000073
ORF1ab/nsp31682S1682StcCtcT9292AY.50.0019
ORF1ab/nsp31682S1682StcCtcT8789B.1.4290.002047
ORF1ab/nsp31682S1682StcCtcA289B.1.4290.000047
ORF1ab/nsp31682S1682StcCtcT8888AY.750.00493
ORF1ab/nsp31682S1682StcCtcT8787B.1.5750.026396
ORF1ab/nsp31682S1682StcCtcT6061AY.390.001483
ORF1ab/nsp31682S1682StcCtcA161AY.390.000025
ORF1ab/nsp31682S1682StcCtcT6060C.370.006964
ORF1ab/nsp31682S1682StcCtcT5758AY.30.000567
ORF1ab/nsp31682S1682StcCtcA158AY.30.00001
ORF1ab/nsp31682S1682StcCtcT5757AY.670.026462
ORF1ab/nsp31682S1682StcCtcT5454AY.330.003606
ORF1ab/nsp31682S1682StcCtcT5252AY.1000.002392
ORF1ab/nsp31682S1682StcCtcA4549B.1.5960.003921
ORF1ab/nsp31682S1682StcCtcT449B.1.5960.000349
ORF1ab/nsp31682S1682StcCtcT4545B.1.428.30.576923
ORF1ab/nsp31682S1682StcCtcT4444AY.1020.001167
ORF1ab/nsp31682S1682StcCtcT4444AY.9.20.001616
ORF1ab/nsp31682S1682StcCtcT4343AY.46.60.003105
ORF1ab/nsp31682S1682StcCtcT4242B.1.351.20.012708
ORF1ab/nsp31682S1682StcCtcT4141C.1.20.174468
ORF1ab/nsp31682S1682StcCtcT3838AY.260.001076
ORF1ab/nsp31682S1682StcCtcT3838AY.99.20.003502
ORF1ab/nsp31682S1682StcCtcT3637AY.290.000568
ORF1ab/nsp31682S1682StcCtcG137AY.290.000016
ORF1ab/nsp31682S1682StcCtcT3636AY.1200.001338
ORF1ab/nsp31682S1682StcCtcT3636AY.450.004381
ORF1ab/nsp31682S1682StcCtcT3535B.1.6270.070707
ORF1ab/nsp31682S1682StcCtcT3131B.1.3510.000922
ORF1ab/nsp31682S1682StcCtcT3131B.1.466.20.012128
ORF1ab/nsp31682S1682StcCtcT3131B.1.9.11
ORF1ab/nsp31682S1682StcCtcT3131N.50.05477
ORF1ab/nsp31682S1682StcCtcT2626B.1.9.31
ORF1ab/nsp31682S1682StcCtcT2626Q.20.015951
ORF1ab/nsp31682S1682StcCtcT2525AY.46.50.00496
ORF1ab/nsp31682S1682StcCtcT2525AY.5.10.093985
ORF1ab/nsp31682S1682StcCtcT2525B.1.1.280.007781
ORF1ab/nsp31682S1682StcCtcT2525B.1.1.3690.011156
ORF1ab/nsp31682S1682StcCtcT2424B.1.221.30.02
ORF1ab/nsp31682S1682StcCtcT2323AY.4.20.000499
ORF1ab/nsp31682S1682StcCtcT2323B.1.2210.001634
ORF1ab/nsp31682S1682StcCtcT2222B.1.438.10.00236
ORF1ab/nsp31682S1682StcCtcT2121AY.200.000816
ORF1ab/nsp31682S1682StcCtcT2121B.1.258.170.002183
ORF1ab/nsp31682S1682StcCtcT2020B.1.4270.00101
ORF1ab/nsp31682S1682StcCtcT1919AY.1190.000671
ORF1ab/nsp31682S1682StcCtcT1919B.1.2320.01021
ORF1ab/nsp31682S1682StcCtcT1919B.1.5250.00215
ORF1ab/nsp31682S1682StcCtcT1818B.1.1.3890.109091
ORF1ab/nsp31682S1682StcCtcT1818B.1.177.40.003799
ORF1ab/nsp31682S1682StcCtcG1418Q.30.00203
ORF1ab/nsp31682S1682StcCtcT418Q.30.00058
ORF1ab/nsp31682S1682StcCtcT1818R.10.00162
ORF1ab/nsp31682S1682StcCtcT1717AY.9.10.001423
ORF1ab/nsp31682S1682StcCtcT1717B.1.1.4340.005925
ORF1ab/nsp31682S1682StcCtcT1717B.1.1600.00053
ORF1ab/nsp31682S1682StcCtcT1717B.1.6370.001242
ORF1ab/nsp31682S1682StcCtcT1717P.20.003173
ORF1ab/nsp31682S1682StcCtcT1616AY.420.000644
ORF1ab/nsp31682S1682StcCtcT1616B.1.1.2140.000887
ORF1ab/nsp31682S1682StcCtcT1515B.1.177.860.002752
ORF1ab/nsp31682S1682StcCtcT1414AY.39.10.000555
ORF1ab/nsp31682S1682StcCtcT1414AY.540.001335
ORF1ab/nsp31682S1682StcCtcT1414B.1.2180.072165
ORF1ab/nsp31682S1682StcCtcT1414B.1.5650.011345
ORF1ab/nsp31682S1682StcCtcT1414P.1.140.000669
ORF1ab/nsp31682S1682StcCtcT1313AD.20.002847
ORF1ab/nsp31682S1682StcCtcT1313AY.470.000404
ORF1ab/nsp31682S1682StcCtcT1313B.1.5970.060185
ORF1ab/nsp31682S1682StcCtcT1313C.390.245283
ORF1ab/nsp31682S1682StcCtcT1212AY.1060.004019
ORF1ab/nsp31682S1682StcCtcT1212B.1.177.570.003372
ORF1ab/nsp31682S1682StcCtcT1212B.1.214.20.007194
ORF1ab/nsp31682S1682StcCtcT1212B.1.6210.001062
ORF1ab/nsp31682S1682StcCtcT1111B.1.1.1920.025404
ORF1ab/nsp31682S1682StcCtcT1111B.1.177.170.009031
ORF1ab/nsp31682S1682StcCtcT1010AY.1180.000626
ORF1ab/nsp31682S1682StcCtcT1010AY.46.40.001645
ORF1ab/nsp31682S1682StcCtcT1010B.1.2390.01221
ORF1ab/nsp31682S1682StcCtcT1010B.1.3110.002746
ORF1ab/nsp31682S1682StcCtcT1010B.1.9.21
ORF1ab/nsp31682S1682StcCtcT1010P.1.70.003193
ORF1ab/nsp31682S1682StcCtcT99AY.120.10.002889
ORF1ab/nsp31682S1682StcCtcT99AY.3.10.000767
ORF1ab/nsp31682S1682StcCtcT99AY.4.30.007576
ORF1ab/nsp31682S1682StcCtcT99B.1.2580.000599
ORF1ab/nsp31682S1682StcCtcT99B.1.5270.033333
ORF1ab/nsp31682S1682StcCtcT99Q.10.001137
ORF1ab/nsp31682S1682StcCtcT88AY.1210.001083
ORF1ab/nsp31682S1682StcCtcT88AY.560.012841
ORF1ab/nsp31682S1682StcCtcT88AY.980.000632
ORF1ab/nsp31682S1682StcCtcT88B.1.1.3180.002414
ORF1ab/nsp31682S1682StcCtcT88B.1.2430.000557
ORF1ab/nsp31682S1682StcCtcT88B.1.5630.135593
ORF1ab/nsp31682S1682StcCtcT88C.360.007286
ORF1ab/nsp31682S1682StcCtcT77AY.1170.000592
ORF1ab/nsp31682S1682StcCtcT77AY.350.001631
ORF1ab/nsp31682S1682StcCtcT77B.1.3690.001997
ORF1ab/nsp31682S1682StcCtcT77B.1.3960.00494
ORF1ab/nsp31682S1682StcCtcT77B.1.4090.005469
ORF1ab/nsp31682S1682StcCtcT77B.1.4970.002203
ORF1ab/nsp31682S1682StcCtcT66AY.1110.001099
ORF1ab/nsp31682S1682StcCtcT66AY.130.000966
ORF1ab/nsp31682S1682StcCtcT66AY.610.000629
ORF1ab/nsp31682S1682StcCtcT66B0.000767
ORF1ab/nsp31682S1682StcCtcT66B.1.1.1630.045802
ORF1ab/nsp31682S1682StcCtcT66B.1.1.1740.02027
ORF1ab/nsp31682S1682StcCtcT66B.1.1.4330.008547
ORF1ab/nsp31682S1682StcCtcT66B.1.1.5260.021277
ORF1ab/nsp31682S1682StcCtcT66B.1.130.014252
ORF1ab/nsp31682S1682StcCtcT66C.36.30.003403
ORF1ab/nsp31682S1682StcCtcT66C.36.3.10.016304
ORF1ab/nsp31682S1682StcCtcT66Q.80.000989
ORF1ab/nsp31682S1682StcCtcT55AY.230.000349
ORF1ab/nsp31682S1682StcCtcT55AY.5.40.001384
ORF1ab/nsp31682S1682StcCtcT55AY.710.002375
ORF1ab/nsp31682S1682StcCtcT55AY.780.007704
ORF1ab/nsp31682S1682StcCtcT55B.1.1.3170.002058
ORF1ab/nsp31682S1682StcCtcT55B.1.1.700.001705
ORF1ab/nsp31682S1682StcCtcT55B.1.2650.006353
ORF1ab/nsp31682S1682StcCtcT55B.1.5640.002129
ORF1ab/nsp31682S1682StcCtcT55C.300.008636
ORF1ab/nsp31682S1682StcCtcT55D.20.000375
ORF1ab/nsp31682S1682StcCtcT55P.1.120.00242
ORF1ab/nsp31682S1682StcCtcT44AE.80.001956
ORF1ab/nsp31682S1682StcCtcT44AY.1130.00057
ORF1ab/nsp31682S1682StcCtcT44AY.140.000352
ORF1ab/nsp31682S1682StcCtcT44AY.4.50.00043
ORF1ab/nsp31682S1682StcCtcT44AY.60.000165
ORF1ab/nsp31682S1682StcCtcT44AY.650.002132
ORF1ab/nsp31682S1682StcCtcT44AY.75.10.000721
ORF1ab/nsp31682S1682StcCtcT44AY.98.10.000194
ORF1ab/nsp31682S1682StcCtcT44B.1.1.4200.004024
ORF1ab/nsp31682S1682StcCtcT44B.1.351.50.002398
ORF1ab/nsp31682S1682StcCtcT44B.1.4250.011976
ORF1ab/nsp31682S1682StcCtcT44B.1.4430.018692
ORF1ab/nsp31682S1682StcCtcT44B.1.4700.005618
ORF1ab/nsp31682S1682StcCtcT44B.1.5610.001588
ORF1ab/nsp31682S1682StcCtcT44B.1.5870.00759
ORF1ab/nsp31682S1682StcCtcT44P.1.170.000647
ORF1ab/nsp31682S1682StcCtcT33A0.001161
ORF1ab/nsp31682S1682StcCtcT33A.210.00831
ORF1ab/nsp31682S1682StcCtcT33A.30.006289
ORF1ab/nsp31682S1682StcCtcT33AY.1050.001929
ORF1ab/nsp31682S1682StcCtcT33AY.1100.000338
ORF1ab/nsp31682S1682StcCtcT33AY.1140.000693
ORF1ab/nsp31682S1682StcCtcT33AY.120.000948
ORF1ab/nsp31682S1682StcCtcT33AY.20.001068
ORF1ab/nsp31682S1682StcCtcT33AY.240.001293
ORF1ab/nsp31682S1682StcCtcT33AY.270.000194
ORF1ab/nsp31682S1682StcCtcT33AY.300.001187
ORF1ab/nsp31682S1682StcCtcT33AY.5.30.001012
ORF1ab/nsp31682S1682StcCtcT33AY.7.10.000338
ORF1ab/nsp31682S1682StcCtcA23AY.700.000417
ORF1ab/nsp31682S1682StcCtcT13AY.700.000209
ORF1ab/nsp31682S1682StcCtcT33AY.770.003382
ORF1ab/nsp31682S1682StcCtcT33B.1.1.2770.002276
ORF1ab/nsp31682S1682StcCtcT33B.1.1.3060.001315
ORF1ab/nsp31682S1682StcCtcT33B.1.1110.003525
ORF1ab/nsp31682S1682StcCtcT33B.1.177.460.002755
ORF1ab/nsp31682S1682StcCtcT33B.1.177.70.000495
ORF1ab/nsp31682S1682StcCtcT33B.1.2810.065217
ORF1ab/nsp31682S1682StcCtcT33B.1.3460.003932
ORF1ab/nsp31682S1682StcCtcT33B.1.36.290.001552
ORF1ab/nsp31682S1682StcCtcT33B.1.4260.003027
ORF1ab/nsp31682S1682StcCtcT33B.1.6090.001438
ORF1ab/nsp31682S1682StcCtcT33B.1.617.10.000387
ORF1ab/nsp31682S1682StcCtcT33C.10.007177
ORF1ab/nsp31682S1682StcCtcG12A.2.40.003367
ORF1ab/nsp31682S1682StcCtcA12A.2.40.003367
ORF1ab/nsp31682S1682StcCtcT22A.2.50.000998
ORF1ab/nsp31682S1682StcCtcT22A.23.10.001408
ORF1ab/nsp31682S1682StcCtcT22AY.1160.000574
ORF1ab/nsp31682S1682StcCtcG12AY.320.000532
ORF1ab/nsp31682S1682StcCtcT12AY.320.000532
ORF1ab/nsp31682S1682StcCtcT22AY.380.000999
ORF1ab/nsp31682S1682StcCtcT22AY.580.001815
ORF1ab/nsp31682S1682StcCtcT22AY.620.000871
ORF1ab/nsp31682S1682StcCtcT22AY.680.000547
ORF1ab/nsp31682S1682StcCtcT22AY.740.000231
ORF1ab/nsp31682S1682StcCtcT22B.1.1.1410.004024
ORF1ab/nsp31682S1682StcCtcT22B.1.1.2070.002364
ORF1ab/nsp31682S1682StcCtcT22B.1.1.330.000842
ORF1ab/nsp31682S1682StcCtcT22B.1.1.3340.032787
ORF1ab/nsp31682S1682StcCtcT22B.1.1.3480.001592
ORF1ab/nsp31682S1682StcCtcA12B.1.1.4090.002833
ORF1ab/nsp31682S1682StcCtcT12B.1.1.4090.002833
ORF1ab/nsp31682S1682StcCtcT22B.1.1.5180.012658
ORF1ab/nsp31682S1682StcCtcT22B.1.1270.004396
ORF1ab/nsp31682S1682StcCtcT22B.1.177.350.001382
ORF1ab/nsp31682S1682StcCtcT22B.1.177.520.003515
ORF1ab/nsp31682S1682StcCtcT22B.1.177.690.002967
ORF1ab/nsp31682S1682StcCtcT22B.1.177.730.001133
ORF1ab/nsp31682S1682StcCtcT22B.1.1920.018519
ORF1ab/nsp31682S1682StcCtcT22B.1.2340.000264
ORF1ab/nsp31682S1682StcCtcT22B.1.2400.000431
ORF1ab/nsp31682S1682StcCtcT22B.1.2410.001623
ORF1ab/nsp31682S1682StcCtcT22B.1.3240.00321
ORF1ab/nsp31682S1682StcCtcT22B.1.3360.004878
ORF1ab/nsp31682S1682StcCtcT22B.1.3980.005952
ORF1ab/nsp31682S1682StcCtcT22B.1.4000.000858
ORF1ab/nsp31682S1682StcCtcT22B.1.415.10.015152
ORF1ab/nsp31682S1682StcCtcT22B.1.4220.001625
ORF1ab/nsp31682S1682StcCtcT22B.1.5330.019231
ORF1ab/nsp31682S1682StcCtcT22B.1.6230.001073
ORF1ab/nsp31682S1682StcCtcT22B.1.6280.000705
ORF1ab/nsp31682S1682StcCtcT22B.1.80.003945
ORF1ab/nsp31682S1682StcCtcT22B.400.000729
ORF1ab/nsp31682S1682StcCtcT22P.1.40.001953
ORF1ab/nsp31682S1682StcCtcT11A.10.000282
ORF1ab/nsp31682S1682StcCtcT11A.110.058824
ORF1ab/nsp31682S1682StcCtcT11A.2.20.001689
ORF1ab/nsp31682S1682StcCtcT11A.230.010526
ORF1ab/nsp31682S1682StcCtcT11AE.50.018519
ORF1ab/nsp31682S1682StcCtcT11AU.10.001266
ORF1ab/nsp31682S1682StcCtcT11AW.10.003049
ORF1ab/nsp31682S1682StcCtcT11AY.10.000396
ORF1ab/nsp31682S1682StcCtcT11AY.1010.00049
ORF1ab/nsp31682S1682StcCtcT11AY.1080.001103
ORF1ab/nsp31682S1682StcCtcT11AY.120.20.001285
ORF1ab/nsp31682S1682StcCtcT11AY.16.10.00047
ORF1ab/nsp31682S1682StcCtcT11AY.23.10.000417
ORF1ab/nsp31682S1682StcCtcT11AY.280.00189
ORF1ab/nsp31682S1682StcCtcT11AY.360.000148
ORF1ab/nsp31682S1682StcCtcT11AY.370.000316
ORF1ab/nsp31682S1682StcCtcT11AY.4.2.10.000149
ORF1ab/nsp31682S1682StcCtcT11AY.4.40.000409
ORF1ab/nsp31682S1682StcCtcT11AY.400.000964
ORF1ab/nsp31682S1682StcCtcT11AY.410.000294
ORF1ab/nsp31682S1682StcCtcT11AY.460.000104
ORF1ab/nsp31682S1682StcCtcT11AY.480.000465
ORF1ab/nsp31682S1682StcCtcT11AY.520.000814
ORF1ab/nsp31682S1682StcCtcT11AY.530.000288
ORF1ab/nsp31682S1682StcCtcT11AY.570.000656
ORF1ab/nsp31682S1682StcCtcT11AY.590.00053
ORF1ab/nsp31682S1682StcCtcT11AY.690.000187
ORF1ab/nsp31682S1682StcCtcT11AY.820.001357
ORF1ab/nsp31682S1682StcCtcT11AY.840.000437
ORF1ab/nsp31682S1682StcCtcT11AY.930.000273
ORF1ab/nsp31682S1682StcCtcT11AY.940.000443
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