CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = S1615S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31615S1615SS2433SsyntcCtcT13404126600.9444947562-7564
ORF1ab/nsp31615S1615SS2433SsyntcCtcA134047210.05378997562-7564
ORF1ab/nsp31615S1615SS2433SsyntcCtcG13404230.001715917562-7564

Details of the mutation S1615S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31615S1615StcCtcT1266013404All0.002421
ORF1ab/nsp31615S1615StcCtcA72113404All0.000138
ORF1ab/nsp31615S1615StcCtcG2313404All0.000004
ORF1ab/nsp31615S1615StcCtcT37283739B.1.1.70.003337
ORF1ab/nsp31615S1615StcCtcG83739B.1.1.70.000007
ORF1ab/nsp31615S1615StcCtcA33739B.1.1.70.000003
ORF1ab/nsp31615S1615StcCtcT13061306AY.90.088279
ORF1ab/nsp31615S1615StcCtcT11161116B.1.3670.884311
ORF1ab/nsp31615S1615StcCtcT812813AY.440.004942
ORF1ab/nsp31615S1615StcCtcA1813AY.440.000006
ORF1ab/nsp31615S1615StcCtcA618618P.30.985646
ORF1ab/nsp31615S1615StcCtcT590591AY.430.002614
ORF1ab/nsp31615S1615StcCtcA1591AY.430.000004
ORF1ab/nsp31615S1615StcCtcT576585AY.40.000896
ORF1ab/nsp31615S1615StcCtcA9585AY.40.000014
ORF1ab/nsp31615S1615StcCtcT339340B.1.617.20.001276
ORF1ab/nsp31615S1615StcCtcA1340B.1.617.20.000004
ORF1ab/nsp31615S1615StcCtcT244244B.1.177.810.046195
ORF1ab/nsp31615S1615StcCtcT195220AY.1030.001211
ORF1ab/nsp31615S1615StcCtcA24220AY.1030.000149
ORF1ab/nsp31615S1615StcCtcG1220AY.1030.000006
ORF1ab/nsp31615S1615StcCtcT210210AY.420.008448
ORF1ab/nsp31615S1615StcCtcT195204B.10.001786
ORF1ab/nsp31615S1615StcCtcA9204B.10.000082
ORF1ab/nsp31615S1615StcCtcT177177B.1.2390.216117
ORF1ab/nsp31615S1615StcCtcT176176B.1.1770.002317
ORF1ab/nsp31615S1615StcCtcT166173B.1.20.001462
ORF1ab/nsp31615S1615StcCtcA7173B.1.20.000062
ORF1ab/nsp31615S1615StcCtcT154156P.10.002426
ORF1ab/nsp31615S1615StcCtcA2156P.10.000032
ORF1ab/nsp31615S1615StcCtcT137137AY.60.005635
ORF1ab/nsp31615S1615StcCtcT113118AY.250.00068
ORF1ab/nsp31615S1615StcCtcA3118AY.250.000018
ORF1ab/nsp31615S1615StcCtcG2118AY.250.000012
ORF1ab/nsp31615S1615StcCtcT117117B.1.438.10.01255
ORF1ab/nsp31615S1615StcCtcT107107AY.3.10.009123
ORF1ab/nsp31615S1615StcCtcT104106AY.1000.004785
ORF1ab/nsp31615S1615StcCtcA2106AY.1000.000092
ORF1ab/nsp31615S1615StcCtcT9090Q.10.011369
ORF1ab/nsp31615S1615StcCtcT8282B.1.1600.002557
ORF1ab/nsp31615S1615StcCtcT8080B.1.1390.058651
ORF1ab/nsp31615S1615StcCtcT6971B.1.10.001252
ORF1ab/nsp31615S1615StcCtcG171B.1.10.000018
ORF1ab/nsp31615S1615StcCtcA171B.1.10.000018
ORF1ab/nsp31615S1615StcCtcT6767B.1.1.1760.029438
ORF1ab/nsp31615S1615StcCtcT6666AY.230.004603
ORF1ab/nsp31615S1615StcCtcT6666B.1.3510.001962
ORF1ab/nsp31615S1615StcCtcT6666B.1.4290.001553
ORF1ab/nsp31615S1615StcCtcT6565B.1.6210.005754
ORF1ab/nsp31615S1615StcCtcT6363AY.4.20.001366
ORF1ab/nsp31615S1615StcCtcT6161B.1.6370.004457
ORF1ab/nsp31615S1615StcCtcT5858B.1.1.3381
ORF1ab/nsp31615S1615StcCtcT4545B.1.1.5190.001787
ORF1ab/nsp31615S1615StcCtcT4243AY.1200.001562
ORF1ab/nsp31615S1615StcCtcA143AY.1200.000037
ORF1ab/nsp31615S1615StcCtcT3638AY.30.000358
ORF1ab/nsp31615S1615StcCtcA238AY.30.00002
ORF1ab/nsp31615S1615StcCtcT3737B.1.5270.137037
ORF1ab/nsp31615S1615StcCtcT3333AY.1180.002067
ORF1ab/nsp31615S1615StcCtcT3030B.1.1.4860.047319
ORF1ab/nsp31615S1615StcCtcT2727AY.1020.000716
ORF1ab/nsp31615S1615StcCtcT2727AY.1060.009042
ORF1ab/nsp31615S1615StcCtcT2526AY.1190.000883
ORF1ab/nsp31615S1615StcCtcA126AY.1190.000035
ORF1ab/nsp31615S1615StcCtcT2525AY.120.10.008026
ORF1ab/nsp31615S1615StcCtcT2225AY.470.000684
ORF1ab/nsp31615S1615StcCtcA325AY.470.000093
ORF1ab/nsp31615S1615StcCtcT1324AY.260.000368
ORF1ab/nsp31615S1615StcCtcA1124AY.260.000311
ORF1ab/nsp31615S1615StcCtcT2323AY.290.000363
ORF1ab/nsp31615S1615StcCtcT2323B.1.4270.001161
ORF1ab/nsp31615S1615StcCtcT2222B.1.2210.001563
ORF1ab/nsp31615S1615StcCtcT2121AY.140.001848
ORF1ab/nsp31615S1615StcCtcT2021B.1.5260.00047
ORF1ab/nsp31615S1615StcCtcA121B.1.5260.000024
ORF1ab/nsp31615S1615StcCtcT2121C.370.002437
ORF1ab/nsp31615S1615StcCtcT2020AY.98.10.000969
ORF1ab/nsp31615S1615StcCtcT1919AY.10.007519
ORF1ab/nsp31615S1615StcCtcT1818AY.360.002668
ORF1ab/nsp31615S1615StcCtcT1818B.1.5170.007686
ORF1ab/nsp31615S1615StcCtcT1617AY.330.001068
ORF1ab/nsp31615S1615StcCtcA117AY.330.000067
ORF1ab/nsp31615S1615StcCtcT1717B.1.1.5250.092896
ORF1ab/nsp31615S1615StcCtcT1516AY.390.000371
ORF1ab/nsp31615S1615StcCtcA116AY.390.000025
ORF1ab/nsp31615S1615StcCtcT1616AZ.50.05614
ORF1ab/nsp31615S1615StcCtcG815B.1.5250.000905
ORF1ab/nsp31615S1615StcCtcT715B.1.5250.000792
ORF1ab/nsp31615S1615StcCtcT1314AY.130.002093
ORF1ab/nsp31615S1615StcCtcA114AY.130.000161
ORF1ab/nsp31615S1615StcCtcT1414AY.16.10.006579
ORF1ab/nsp31615S1615StcCtcT1414AY.200.000544
ORF1ab/nsp31615S1615StcCtcT1414AY.4.50.001505
ORF1ab/nsp31615S1615StcCtcT1414B.1.5960.00122
ORF1ab/nsp31615S1615StcCtcT1414L.20.159091
ORF1ab/nsp31615S1615StcCtcT1313B.1.36.290.006725
ORF1ab/nsp31615S1615StcCtcT1212AY.930.003277
ORF1ab/nsp31615S1615StcCtcT1010AY.1130.001424
ORF1ab/nsp31615S1615StcCtcT1010AY.410.002939
ORF1ab/nsp31615S1615StcCtcT910AY.50.000186
ORF1ab/nsp31615S1615StcCtcG110AY.50.000021
ORF1ab/nsp31615S1615StcCtcT1010B.1.177.330.016447
ORF1ab/nsp31615S1615StcCtcT99AY.7.10.001014
ORF1ab/nsp31615S1615StcCtcT89B.1.1.280.00249
ORF1ab/nsp31615S1615StcCtcA19B.1.1.280.000311
ORF1ab/nsp31615S1615StcCtcT99B.1.177.790.021077
ORF1ab/nsp31615S1615StcCtcT99B.1.360.001313
ORF1ab/nsp31615S1615StcCtcT99Q.80.001484
ORF1ab/nsp31615S1615StcCtcT78B0.000895
ORF1ab/nsp31615S1615StcCtcA18B0.000128
ORF1ab/nsp31615S1615StcCtcT78B.1.2580.000466
ORF1ab/nsp31615S1615StcCtcA18B.1.2580.000067
ORF1ab/nsp31615S1615StcCtcT88B.1.4970.002518
ORF1ab/nsp31615S1615StcCtcT88P.1.10.002541
ORF1ab/nsp31615S1615StcCtcT67AY.9.10.000502
ORF1ab/nsp31615S1615StcCtcA17AY.9.10.000084
ORF1ab/nsp31615S1615StcCtcT77B.1.1.10.002287
ORF1ab/nsp31615S1615StcCtcT77B.1.1.2140.000388
ORF1ab/nsp31615S1615StcCtcT77B.1.1.4850.116667
ORF1ab/nsp31615S1615StcCtcT77B.1.177.350.004838
ORF1ab/nsp31615S1615StcCtcT77B.1.214.20.004197
ORF1ab/nsp31615S1615StcCtcT77B.1.2430.000487
ORF1ab/nsp31615S1615StcCtcT77B.1.36.70.028
ORF1ab/nsp31615S1615StcCtcT66AY.450.00073
ORF1ab/nsp31615S1615StcCtcT66AY.850.002563
ORF1ab/nsp31615S1615StcCtcT66AY.980.000474
ORF1ab/nsp31615S1615StcCtcT66B.1.1.3170.00247
ORF1ab/nsp31615S1615StcCtcT66B.1.2340.000792
ORF1ab/nsp31615S1615StcCtcT66P.1.140.000287
ORF1ab/nsp31615S1615StcCtcT55A.10.001409
ORF1ab/nsp31615S1615StcCtcT55AY.1100.000563
ORF1ab/nsp31615S1615StcCtcT55AY.1170.000423
ORF1ab/nsp31615S1615StcCtcT55AY.39.10.000198
ORF1ab/nsp31615S1615StcCtcT45AY.460.000416
ORF1ab/nsp31615S1615StcCtcA15AY.460.000104
ORF1ab/nsp31615S1615StcCtcT45B.1.1.2160.003562
ORF1ab/nsp31615S1615StcCtcA15B.1.1.2160.00089
ORF1ab/nsp31615S1615StcCtcT55B.1.1.2840.000537
ORF1ab/nsp31615S1615StcCtcT55B.1.2320.002687
ORF1ab/nsp31615S1615StcCtcT55B.1.4460.1
ORF1ab/nsp31615S1615StcCtcT55P.1.150.001162
ORF1ab/nsp31615S1615StcCtcT55P.1.70.001596
ORF1ab/nsp31615S1615StcCtcT44AY.4.2.10.000596
ORF1ab/nsp31615S1615StcCtcT44AY.9.20.000147
ORF1ab/nsp31615S1615StcCtcT44B.1.1.3980.012903
ORF1ab/nsp31615S1615StcCtcT44B.1.177.50.004969
ORF1ab/nsp31615S1615StcCtcT44B.1.177.870.002911
ORF1ab/nsp31615S1615StcCtcT44B.1.3110.001098
ORF1ab/nsp31615S1615StcCtcT44B.1.3330.042105
ORF1ab/nsp31615S1615StcCtcT44B.1.5580.018265
ORF1ab/nsp31615S1615StcCtcT44D.20.0003
ORF1ab/nsp31615S1615StcCtcT33AY.1050.001929
ORF1ab/nsp31615S1615StcCtcT33AY.1110.000549
ORF1ab/nsp31615S1615StcCtcT33AY.46.20.001906
ORF1ab/nsp31615S1615StcCtcT33AY.46.60.000217
ORF1ab/nsp31615S1615StcCtcT33AY.750.000168
ORF1ab/nsp31615S1615StcCtcT33AY.790.003632
ORF1ab/nsp31615S1615StcCtcT33B.1.1.1980.004405
ORF1ab/nsp31615S1615StcCtcT33B.1.1.330.001263
ORF1ab/nsp31615S1615StcCtcT33B.1.1260.003827
ORF1ab/nsp31615S1615StcCtcT33B.1.177.100.002634
ORF1ab/nsp31615S1615StcCtcT33B.1.2890.007979
ORF1ab/nsp31615S1615StcCtcT33B.1.4690.01083
ORF1ab/nsp31615S1615StcCtcT33B.1.617.10.000387
ORF1ab/nsp31615S1615StcCtcT33B.1.6280.001057
ORF1ab/nsp31615S1615StcCtcT33B.400.001093
ORF1ab/nsp31615S1615StcCtcA33P.50.041096
ORF1ab/nsp31615S1615StcCtcT220.111111
ORF1ab/nsp31615S1615StcCtcT22A.50.003846
ORF1ab/nsp31615S1615StcCtcT22AY.120.20.002571
ORF1ab/nsp31615S1615StcCtcT22AY.270.000129
ORF1ab/nsp31615S1615StcCtcT22AY.340.000194
ORF1ab/nsp31615S1615StcCtcT22AY.380.000999
ORF1ab/nsp31615S1615StcCtcT22AY.46.40.000329
ORF1ab/nsp31615S1615StcCtcT22AY.5.30.000675
ORF1ab/nsp31615S1615StcCtcT22AY.540.000191
ORF1ab/nsp31615S1615StcCtcT22AY.590.001059
ORF1ab/nsp31615S1615StcCtcT22AY.640.00119
ORF1ab/nsp31615S1615StcCtcT22AY.720.002721
ORF1ab/nsp31615S1615StcCtcT22AY.75.10.000361
ORF1ab/nsp31615S1615StcCtcT22AY.950.001522
ORF1ab/nsp31615S1615StcCtcT22AY.99.20.000184
ORF1ab/nsp31615S1615StcCtcT22B.1.1.2890.004167
ORF1ab/nsp31615S1615StcCtcT22B.1.1.3720.001377
ORF1ab/nsp31615S1615StcCtcT22B.1.1.500.001358
ORF1ab/nsp31615S1615StcCtcT22B.1.1.5230.003125
ORF1ab/nsp31615S1615StcCtcT22B.1.1280.001271
ORF1ab/nsp31615S1615StcCtcT22B.1.177.120.000303
ORF1ab/nsp31615S1615StcCtcT22B.1.177.160.001329
ORF1ab/nsp31615S1615StcCtcT22B.1.177.420.001789
ORF1ab/nsp31615S1615StcCtcT22B.1.177.500.00939
ORF1ab/nsp31615S1615StcCtcT22B.1.177.540.001213
ORF1ab/nsp31615S1615StcCtcT22B.1.177.860.000367
ORF1ab/nsp31615S1615StcCtcT22B.1.1990.008264
ORF1ab/nsp31615S1615StcCtcT22B.1.351.20.000605
ORF1ab/nsp31615S1615StcCtcT22B.1.36.310.003503
ORF1ab/nsp31615S1615StcCtcT22B.1.3610.002577
ORF1ab/nsp31615S1615StcCtcT22B.1.3750.001639
ORF1ab/nsp31615S1615StcCtcA12B.1.3960.000706
ORF1ab/nsp31615S1615StcCtcT12B.1.3960.000706
ORF1ab/nsp31615S1615StcCtcT22B.1.4520.027397
ORF1ab/nsp31615S1615StcCtcT22B.1.5030.004975
ORF1ab/nsp31615S1615StcCtcT22B.1.5870.003795
ORF1ab/nsp31615S1615StcCtcT22B.1.5880.00182
ORF1ab/nsp31615S1615StcCtcT22B.1.5950.000522
ORF1ab/nsp31615S1615StcCtcT22B.1.6100.007092
ORF1ab/nsp31615S1615StcCtcT22B.1.6230.001073
ORF1ab/nsp31615S1615StcCtcT22P.1.100.000539
ORF1ab/nsp31615S1615StcCtcT22P.1.120.000968
ORF1ab/nsp31615S1615StcCtcT22P.1.90.009615
ORF1ab/nsp31615S1615StcCtcT12P.20.000187
ORF1ab/nsp31615S1615StcCtcG12P.20.000187
ORF1ab/nsp31615S1615StcCtcT22R.10.00018
ORF1ab/nsp31615S1615StcCtcA11A0.000387
ORF1ab/nsp31615S1615StcCtcT11AD.20.000219
ORF1ab/nsp31615S1615StcCtcT11AY.116.10.000311
ORF1ab/nsp31615S1615StcCtcA11AY.120.2.10.000498
ORF1ab/nsp31615S1615StcCtcT11AY.1210.000135
ORF1ab/nsp31615S1615StcCtcT11AY.190.00114
ORF1ab/nsp31615S1615StcCtcT11AY.220.002092
ORF1ab/nsp31615S1615StcCtcT11AY.29.10.000221
ORF1ab/nsp31615S1615StcCtcT11AY.34.10.00051
ORF1ab/nsp31615S1615StcCtcT11AY.39.20.001541
ORF1ab/nsp31615S1615StcCtcT11AY.480.000465
ORF1ab/nsp31615S1615StcCtcT11AY.510.000909
ORF1ab/nsp31615S1615StcCtcT11AY.520.000814
ORF1ab/nsp31615S1615StcCtcT11AY.560.001605
ORF1ab/nsp31615S1615StcCtcA11AY.570.000656
ORF1ab/nsp31615S1615StcCtcT11AY.600.000938
ORF1ab/nsp31615S1615StcCtcT11AY.610.000105
ORF1ab/nsp31615S1615StcCtcT11AY.620.000436
ORF1ab/nsp31615S1615StcCtcT11AY.650.000533
ORF1ab/nsp31615S1615StcCtcT11AY.670.000464
ORF1ab/nsp31615S1615StcCtcT11AY.680.000274
ORF1ab/nsp31615S1615StcCtcT11AY.70.000196
ORF1ab/nsp31615S1615StcCtcT11AY.700.000209
ORF1ab/nsp31615S1615StcCtcA11AY.710.000475
ORF1ab/nsp31615S1615StcCtcT11AY.740.000116
ORF1ab/nsp31615S1615StcCtcT11AY.840.000437
ORF1ab/nsp31615S1615StcCtcT11AY.870.000833
ORF1ab/nsp31615S1615StcCtcT11AY.910.00073
ORF1ab/nsp31615S1615StcCtcT11AY.970.001701
ORF1ab/nsp31615S1615StcCtcT11AY.99.10.001553
ORF1ab/nsp31615S1615StcCtcT11AZ.30.00152
ORF1ab/nsp31615S1615StcCtcT11B.1.1.1710.003676
ORF1ab/nsp31615S1615StcCtcT11B.1.1.2070.001182
ORF1ab/nsp31615S1615StcCtcT11B.1.1.2200.001859
ORF1ab/nsp31615S1615StcCtcT11B.1.1.2220.000204
ORF1ab/nsp31615S1615StcCtcT11B.1.1.2320.001815
ORF1ab/nsp31615S1615StcCtcT11B.1.1.2630.001558
ORF1ab/nsp31615S1615StcCtcT11B.1.1.2880.001916
ORF1ab/nsp31615S1615StcCtcT11B.1.1.2970.002237
ORF1ab/nsp31615S1615StcCtcT11B.1.1.3060.000438
ORF1ab/nsp31615S1615StcCtcT11B.1.1.3110.000358
ORF1ab/nsp31615S1615StcCtcT11B.1.1.3180.000302
ORF1ab/nsp31615S1615StcCtcT11B.1.1.3480.000796
ORF1ab/nsp31615S1615StcCtcT11B.1.1.3490.010309
ORF1ab/nsp31615S1615StcCtcT11B.1.1.3660.015873
ORF1ab/nsp31615S1615StcCtcT11B.1.1.3690.000446
ORF1ab/nsp31615S1615StcCtcT11B.1.1.4130.006897
ORF1ab/nsp31615S1615StcCtcT11B.1.1.4340.000349
ORF1ab/nsp31615S1615StcCtcT11B.1.1.520.012195
ORF1ab/nsp31615S1615StcCtcA11B.1.1.5240.020833
ORF1ab/nsp31615S1615StcCtcT11B.1.1.630.000386
ORF1ab/nsp31615S1615StcCtcT11B.1.1.700.000341
ORF1ab/nsp31615S1615StcCtcT11B.1.1.710.006061
ORF1ab/nsp31615S1615StcCtcT11B.1.1.830.00271
ORF1ab/nsp31615S1615StcCtcA11B.1.130.002375
ORF1ab/nsp31615S1615StcCtcT11B.1.1570.002985
ORF1ab/nsp31615S1615StcCtcT11B.1.160.140.002119
ORF1ab/nsp31615S1615StcCtcT11B.1.160.260.002421
ORF1ab/nsp31615S1615StcCtcT11B.1.177.170.000821
ORF1ab/nsp31615S1615StcCtcT11B.1.177.530.002392
ORF1ab/nsp31615S1615StcCtcT11B.1.177.60.000977
ORF1ab/nsp31615S1615StcCtcT11B.1.177.600.000218
ORF1ab/nsp31615S1615StcCtcT11B.1.1890.004292
ORF1ab/nsp31615S1615StcCtcT11B.1.230.006061
ORF1ab/nsp31615S1615StcCtcT11B.1.2350.002519
ORF1ab/nsp31615S1615StcCtcT11B.1.2380.014925
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