CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = S1467del

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31467S1467delS2285deldelTCT---69969917118-7120

Details of the mutation S1467del within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31467S1467delTCT---699699All0.000134
ORF1ab/nsp31467S1467delTCT---137137AY.40.000213
ORF1ab/nsp31467S1467delTCT---112112AY.440.000682
ORF1ab/nsp31467S1467delTCT---7676B.1.1.70.000068
ORF1ab/nsp31467S1467delTCT---5252AY.250.000313
ORF1ab/nsp31467S1467delTCT---4949B.1.617.20.000185
ORF1ab/nsp31467S1467delTCT---2020AY.430.000089
ORF1ab/nsp31467S1467delTCT---2020B.1.1770.000263
ORF1ab/nsp31467S1467delTCT---1212AY.30.000119
ORF1ab/nsp31467S1467delTCT---1111AY.1030.000068
ORF1ab/nsp31467S1467delTCT---1111AY.4.20.000239
ORF1ab/nsp31467S1467delTCT---88AY.1020.000212
ORF1ab/nsp31467S1467delTCT---77AY.4.50.000752
ORF1ab/nsp31467S1467delTCT---77AY.50.000145
ORF1ab/nsp31467S1467delTCT---77AY.980.000553
ORF1ab/nsp31467S1467delTCT---77B.10.000064
ORF1ab/nsp31467S1467delTCT---66AY.98.10.000291
ORF1ab/nsp31467S1467delTCT---66B.1.20.000053
ORF1ab/nsp31467S1467delTCT---66B.1.5260.000141
ORF1ab/nsp31467S1467delTCT---55B.1.10.000091
ORF1ab/nsp31467S1467delTCT---440.222222
ORF1ab/nsp31467S1467delTCT---44AP.10.006006
ORF1ab/nsp31467S1467delTCT---44AY.1000.000184
ORF1ab/nsp31467S1467delTCT---44AY.390.000099
ORF1ab/nsp31467S1467delTCT---44AY.880.003537
ORF1ab/nsp31467S1467delTCT---44AY.99.20.000369
ORF1ab/nsp31467S1467delTCT---44B.1.1.2140.000222
ORF1ab/nsp31467S1467delTCT---44B.1.1.2180.030769
ORF1ab/nsp31467S1467delTCT---33AY.1140.000693
ORF1ab/nsp31467S1467delTCT---33AY.1180.000188
ORF1ab/nsp31467S1467delTCT---33AY.1190.000106
ORF1ab/nsp31467S1467delTCT---33AY.1200.000112
ORF1ab/nsp31467S1467delTCT---33AY.200.000117
ORF1ab/nsp31467S1467delTCT---33B.1.6210.000266
ORF1ab/nsp31467S1467delTCT---22AD.20.000438
ORF1ab/nsp31467S1467delTCT---22AY.1110.000366
ORF1ab/nsp31467S1467delTCT---22AY.20.000712
ORF1ab/nsp31467S1467delTCT---22AY.34.10.00102
ORF1ab/nsp31467S1467delTCT---22AY.450.000243
ORF1ab/nsp31467S1467delTCT---22AY.5.40.000553
ORF1ab/nsp31467S1467delTCT---22AY.60.000082
ORF1ab/nsp31467S1467delTCT---22AY.920.000575
ORF1ab/nsp31467S1467delTCT---22AY.99.10.003106
ORF1ab/nsp31467S1467delTCT---22AZ.10.001735
ORF1ab/nsp31467S1467delTCT---22B.1.177.620.002384
ORF1ab/nsp31467S1467delTCT---22B.1.5960.000174
ORF1ab/nsp31467S1467delTCT---22C.350.001548
ORF1ab/nsp31467S1467delTCT---22P.10.000032
ORF1ab/nsp31467S1467delTCT---22U.30.007722
ORF1ab/nsp31467S1467delTCT---11AY.1010.00049
ORF1ab/nsp31467S1467delTCT---11AY.1130.000142
ORF1ab/nsp31467S1467delTCT---11AY.116.10.000311
ORF1ab/nsp31467S1467delTCT---11AY.290.000016
ORF1ab/nsp31467S1467delTCT---11AY.3.10.000085
ORF1ab/nsp31467S1467delTCT---11AY.330.000067
ORF1ab/nsp31467S1467delTCT---11AY.340.000097
ORF1ab/nsp31467S1467delTCT---11AY.39.10.00004
ORF1ab/nsp31467S1467delTCT---11AY.4.30.000842
ORF1ab/nsp31467S1467delTCT---11AY.420.00004
ORF1ab/nsp31467S1467delTCT---11AY.46.40.000165
ORF1ab/nsp31467S1467delTCT---11AY.590.00053
ORF1ab/nsp31467S1467delTCT---11AY.600.000938
ORF1ab/nsp31467S1467delTCT---11AY.660.00107
ORF1ab/nsp31467S1467delTCT---11AY.670.000464
ORF1ab/nsp31467S1467delTCT---11AY.70.000196
ORF1ab/nsp31467S1467delTCT---11AY.7.10.000113
ORF1ab/nsp31467S1467delTCT---11AY.730.000665
ORF1ab/nsp31467S1467delTCT---11AY.840.000437
ORF1ab/nsp31467S1467delTCT---11AY.90.000068
ORF1ab/nsp31467S1467delTCT---11AY.9.20.000037
ORF1ab/nsp31467S1467delTCT---11AY.960.002075
ORF1ab/nsp31467S1467delTCT---11AY.990.001049
ORF1ab/nsp31467S1467delTCT---11B0.000128
ORF1ab/nsp31467S1467delTCT---11B.1.1.1590.004673
ORF1ab/nsp31467S1467delTCT---11B.1.1.1920.002309
ORF1ab/nsp31467S1467delTCT---11B.1.1.3050.003861
ORF1ab/nsp31467S1467delTCT---11B.1.1.3110.000358
ORF1ab/nsp31467S1467delTCT---11B.1.1.3120.001912
ORF1ab/nsp31467S1467delTCT---11B.1.1.370.000193
ORF1ab/nsp31467S1467delTCT---11B.1.1.390.00051
ORF1ab/nsp31467S1467delTCT---11B.1.1.460.004367
ORF1ab/nsp31467S1467delTCT---11B.1.1.4640.001473
ORF1ab/nsp31467S1467delTCT---11B.1.1.700.000341
ORF1ab/nsp31467S1467delTCT---11B.1.1600.000031
ORF1ab/nsp31467S1467delTCT---11B.1.160.70.002079
ORF1ab/nsp31467S1467delTCT---11B.1.177.100.000878
ORF1ab/nsp31467S1467delTCT---11B.1.177.110.001698
ORF1ab/nsp31467S1467delTCT---11B.1.177.150.000631
ORF1ab/nsp31467S1467delTCT---11B.1.177.160.000664
ORF1ab/nsp31467S1467delTCT---11B.1.177.210.000076
ORF1ab/nsp31467S1467delTCT---11B.1.177.530.002392
ORF1ab/nsp31467S1467delTCT---11B.1.177.540.000606
ORF1ab/nsp31467S1467delTCT---11B.1.177.570.000281
ORF1ab/nsp31467S1467delTCT---11B.1.177.60.000977
ORF1ab/nsp31467S1467delTCT---11B.1.177.90.001332
ORF1ab/nsp31467S1467delTCT---11B.1.2210.000071
ORF1ab/nsp31467S1467delTCT---11B.1.2580.000067
ORF1ab/nsp31467S1467delTCT---11B.1.2650.001271
ORF1ab/nsp31467S1467delTCT---11B.1.36.170.000494
ORF1ab/nsp31467S1467delTCT---11B.1.4110.003704
ORF1ab/nsp31467S1467delTCT---11B.1.4150.014286
ORF1ab/nsp31467S1467delTCT---11B.1.416.10.001563
ORF1ab/nsp31467S1467delTCT---11B.1.5210.004975
ORF1ab/nsp31467S1467delTCT---11B.1.5770.000687
ORF1ab/nsp31467S1467delTCT---11B.340.013699
ORF1ab/nsp31467S1467delTCT---11C.36.30.000567
ORF1ab/nsp31467S1467delTCT---11C.370.000116
ORF1ab/nsp31467S1467delTCT---11P.1.150.000232
ORF1ab/nsp31467S1467delTCT---11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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