CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = S1467Y

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31467S1467YS2285YnonsyntCttAt49460.9387767118-7120
ORF1ab/nsp31467S1467YS2285YnonsyntCTtAC4930.06122457118-7120

Details of the mutation S1467Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31467S1467YtCttAt4649All0.000009
ORF1ab/nsp31467S1467YtCTtAC349All0.000001
ORF1ab/nsp31467S1467YtCttAt1010AY.40.000016
ORF1ab/nsp31467S1467YtCttAt77B.1.1.70.000006
ORF1ab/nsp31467S1467YtCttAt55B.1.1.4160.004525
ORF1ab/nsp31467S1467YtCttAt44B.1.1770.000053
ORF1ab/nsp31467S1467YtCttAt34B.1.617.20.000011
ORF1ab/nsp31467S1467YtCTtAC14B.1.617.20.000004
ORF1ab/nsp31467S1467YtCttAt23AY.9.20.000073
ORF1ab/nsp31467S1467YtCTtAC13AY.9.20.000037
ORF1ab/nsp31467S1467YtCttAt22AY.140.000176
ORF1ab/nsp31467S1467YtCttAt22B.10.000018
ORF1ab/nsp31467S1467YtCttAt22B.1.466.20.000782
ORF1ab/nsp31467S1467YtCttAt110.055556
ORF1ab/nsp31467S1467YtCttAt11AY.1130.000142
ORF1ab/nsp31467S1467YtCttAt11AY.1180.000063
ORF1ab/nsp31467S1467YtCTtAC11AY.430.000004
ORF1ab/nsp31467S1467YtCttAt11AY.5.30.000337
ORF1ab/nsp31467S1467YtCttAt11AY.590.00053
ORF1ab/nsp31467S1467YtCttAt11B.1.10.000018
ORF1ab/nsp31467S1467YtCttAt11B.1.1.3180.000302
ORF1ab/nsp31467S1467YtCttAt11B.1.4290.000024
ORF1ab/nsp31467S1467YtCttAt11B.6.60.000889