CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = S1467S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31467S1467SS2285SsyntcTtcC4944520.914987118-7120
ORF1ab/nsp31467S1467SS2285SsyntcTtcG494290.05870457118-7120
ORF1ab/nsp31467S1467SS2285SsyntcTtcA494130.02631587118-7120

Details of the mutation S1467S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31467S1467StcTtcC452494All0.000086
ORF1ab/nsp31467S1467StcTtcG29494All0.000006
ORF1ab/nsp31467S1467StcTtcA13494All0.000002
ORF1ab/nsp31467S1467StcTtcC145145B.1.1.3170.059695
ORF1ab/nsp31467S1467StcTtcC105105Q.10.013264
ORF1ab/nsp31467S1467StcTtcC7878P.1.140.003728
ORF1ab/nsp31467S1467StcTtcC4344B.1.20.000379
ORF1ab/nsp31467S1467StcTtcA144B.1.20.000009
ORF1ab/nsp31467S1467StcTtcC1420B.1.1.70.000013
ORF1ab/nsp31467S1467StcTtcG620B.1.1.70.000005
ORF1ab/nsp31467S1467StcTtcG910P.10.000142
ORF1ab/nsp31467S1467StcTtcC110P.10.000016
ORF1ab/nsp31467S1467StcTtcG59AY.1030.000031
ORF1ab/nsp31467S1467StcTtcC39AY.1030.000019
ORF1ab/nsp31467S1467StcTtcA19AY.1030.000006
ORF1ab/nsp31467S1467StcTtcC78AY.440.000043
ORF1ab/nsp31467S1467StcTtcA18AY.440.000006
ORF1ab/nsp31467S1467StcTtcC88B.1.4290.000188
ORF1ab/nsp31467S1467StcTtcC56AY.30.00005
ORF1ab/nsp31467S1467StcTtcA16AY.30.00001
ORF1ab/nsp31467S1467StcTtcC66AY.40.000009
ORF1ab/nsp31467S1467StcTtcC56B.1.617.20.000019
ORF1ab/nsp31467S1467StcTtcG16B.1.617.20.000004
ORF1ab/nsp31467S1467StcTtcC33AY.260.000085
ORF1ab/nsp31467S1467StcTtcC23B.10.000018
ORF1ab/nsp31467S1467StcTtcA13B.10.000009
ORF1ab/nsp31467S1467StcTtcA23B.1.3510.000059
ORF1ab/nsp31467S1467StcTtcC13B.1.3510.00003
ORF1ab/nsp31467S1467StcTtcC33B.1.6270.006061
ORF1ab/nsp31467S1467StcTtcG23P.20.000373
ORF1ab/nsp31467S1467StcTtcC13P.20.000187
ORF1ab/nsp31467S1467StcTtcA12AY.330.000067
ORF1ab/nsp31467S1467StcTtcC12AY.330.000067
ORF1ab/nsp31467S1467StcTtcC22AY.450.000243
ORF1ab/nsp31467S1467StcTtcA12B.1.10.000018
ORF1ab/nsp31467S1467StcTtcC12B.1.10.000018
ORF1ab/nsp31467S1467StcTtcC22B.1.36.80.002
ORF1ab/nsp31467S1467StcTtcC22B.1.5510.002581
ORF1ab/nsp31467S1467StcTtcC22B.1.5960.000174
ORF1ab/nsp31467S1467StcTtcG22P.1.170.000324
ORF1ab/nsp31467S1467StcTtcC11AW.10.003049
ORF1ab/nsp31467S1467StcTtcC11AY.1000.000046
ORF1ab/nsp31467S1467StcTtcA11AY.250.000006
ORF1ab/nsp31467S1467StcTtcC11AY.460.000104
ORF1ab/nsp31467S1467StcTtcG11AY.46.50.000198
ORF1ab/nsp31467S1467StcTtcC11AY.670.000464
ORF1ab/nsp31467S1467StcTtcC11B.1.1.100.001115
ORF1ab/nsp31467S1467StcTtcG11B.1.1.280.000311
ORF1ab/nsp31467S1467StcTtcC11B.1.1.3000.010753
ORF1ab/nsp31467S1467StcTtcG11B.1.1.330.000421
ORF1ab/nsp31467S1467StcTtcC11B.1.1600.000031
ORF1ab/nsp31467S1467StcTtcC11B.1.177.120.000152
ORF1ab/nsp31467S1467StcTtcC11B.1.177.40.000211
ORF1ab/nsp31467S1467StcTtcC11B.1.177.570.000281
ORF1ab/nsp31467S1467StcTtcA11B.1.36.310.001751
ORF1ab/nsp31467S1467StcTtcA11B.1.5240.001406
ORF1ab/nsp31467S1467StcTtcC11B.1.5950.000261
ORF1ab/nsp31467S1467StcTtcA11B.1.6060.006024
ORF1ab/nsp31467S1467StcTtcC11C.180.002591
ORF1ab/nsp31467S1467StcTtcG11D.20.000075