CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = S1443S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31443S1443SS2261SsyntcTtcC3413020.885637046-7048
ORF1ab/nsp31443S1443SS2261SsyntcTtcA341220.06451617046-7048
ORF1ab/nsp31443S1443SS2261SsyntcTtcG341160.04692087046-7048
ORF1ab/nsp31443S1443SS2261SsynTCtAGt34110.002932557046-7048

Details of the mutation S1443S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31443S1443StcTtcC302341All0.000058
ORF1ab/nsp31443S1443StcTtcA22341All0.000004
ORF1ab/nsp31443S1443StcTtcG16341All0.000003
ORF1ab/nsp31443S1443STCtAGt1341All0
ORF1ab/nsp31443S1443StcTtcC216219B.1.20.001902
ORF1ab/nsp31443S1443StcTtcA2219B.1.20.000018
ORF1ab/nsp31443S1443StcTtcG1219B.1.20.000009
ORF1ab/nsp31443S1443StcTtcC2327B.10.000211
ORF1ab/nsp31443S1443StcTtcG227B.10.000018
ORF1ab/nsp31443S1443StcTtcA227B.10.000018
ORF1ab/nsp31443S1443StcTtcC2525B.1.617.20.000094
ORF1ab/nsp31443S1443StcTtcA1517AY.40.000023
ORF1ab/nsp31443S1443StcTtcC217AY.40.000003
ORF1ab/nsp31443S1443StcTtcC811B.1.1.70.000007
ORF1ab/nsp31443S1443StcTtcG311B.1.1.70.000003
ORF1ab/nsp31443S1443StcTtcC45AY.30.00004
ORF1ab/nsp31443S1443StcTtcA15AY.30.00001
ORF1ab/nsp31443S1443StcTtcG55AY.50.000103
ORF1ab/nsp31443S1443StcTtcA13B.1.1770.000013
ORF1ab/nsp31443S1443StcTtcC13B.1.1770.000013
ORF1ab/nsp31443S1443StcTtcG13B.1.1770.000013
ORF1ab/nsp31443S1443StcTtcC22B.1.10.000036
ORF1ab/nsp31443S1443StcTtcG22B.1.1.440.004819
ORF1ab/nsp31443S1443StcTtcC22C.360.001821
ORF1ab/nsp31443S1443StcTtcC22P.1.140.000096
ORF1ab/nsp31443S1443StcTtcG110.055556
ORF1ab/nsp31443S1443StcTtcC11AY.120.2.10.000498
ORF1ab/nsp31443S1443StcTtcC11AY.430.000004
ORF1ab/nsp31443S1443StcTtcC11AY.440.000006
ORF1ab/nsp31443S1443StcTtcC11AY.46.40.000165
ORF1ab/nsp31443S1443StcTtcG11AY.60.000041
ORF1ab/nsp31443S1443StcTtcC11AY.690.000187
ORF1ab/nsp31443S1443StcTtcA11AY.820.001357
ORF1ab/nsp31443S1443StcTtcC11B.1.1.10.000327
ORF1ab/nsp31443S1443StcTtcC11B.1.1.390.00051
ORF1ab/nsp31443S1443StcTtcC11B.1.2210.000071
ORF1ab/nsp31443S1443StcTtcC11B.1.2740.011905
ORF1ab/nsp31443S1443StcTtcC11B.1.36.290.000517
ORF1ab/nsp31443S1443StcTtcC11B.1.3620.001541
ORF1ab/nsp31443S1443StcTtcC11B.1.3660.004878
ORF1ab/nsp31443S1443StcTtcC11B.1.3960.000706
ORF1ab/nsp31443S1443StcTtcC11B.1.5950.000261
ORF1ab/nsp31443S1443StcTtcC11B.1.6090.000479
ORF1ab/nsp31443S1443STCtAGt11B.1.617.10.000129
ORF1ab/nsp31443S1443StcTtcC11D.20.000075
ORF1ab/nsp31443S1443StcTtcC11P.1.120.000484