CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = S1396A

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31396S1396AS2214AnonsynTcaGca5855700.9743596905-6907
ORF1ab/nsp31396S1396AS2214AnonsynTcAGcT585110.01880346905-6907
ORF1ab/nsp31396S1396AS2214AnonsynTcAGcG58540.006837616905-6907

Details of the mutation S1396A within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31396S1396ATcaGca570585All0.000109
ORF1ab/nsp31396S1396ATcAGcT11585All0.000002
ORF1ab/nsp31396S1396ATcAGcG4585All0.000001
ORF1ab/nsp31396S1396ATcaGca455455B.1.3050.978495
ORF1ab/nsp31396S1396ATcaGca5962B.10.00054
ORF1ab/nsp31396S1396ATcAGcT262B.10.000018
ORF1ab/nsp31396S1396ATcAGcG162B.10.000009
ORF1ab/nsp31396S1396ATcaGca4445B.1.1.70.000039
ORF1ab/nsp31396S1396ATcAGcG145B.1.1.70.000001
ORF1ab/nsp31396S1396ATcAGcT23B.1.10.000036
ORF1ab/nsp31396S1396ATcaGca13B.1.10.000018
ORF1ab/nsp31396S1396ATcAGcT33B.1.360.000438
ORF1ab/nsp31396S1396ATcaGca220.111111
ORF1ab/nsp31396S1396ATcaGca22P.10.000032
ORF1ab/nsp31396S1396ATcaGca11AY.360.000148
ORF1ab/nsp31396S1396ATcAGcT11B.1.1.2320.001815
ORF1ab/nsp31396S1396ATcAGcT11B.1.1.2820.011628
ORF1ab/nsp31396S1396ATcAGcG11B.1.1.3150.008475
ORF1ab/nsp31396S1396ATcAGcT11B.1.1.3260.001761
ORF1ab/nsp31396S1396ATcaGca11B.1.1.390.00051
ORF1ab/nsp31396S1396ATcaGca11B.1.20.000009
ORF1ab/nsp31396S1396ATcAGcT11B.1.36.350.002604
ORF1ab/nsp31396S1396ATcAGcG11B.1.4150.014286
ORF1ab/nsp31396S1396ATcaGca11B.1.5950.000261
ORF1ab/nsp31396S1396ATcaGca11B.1.617.20.000004
ORF1ab/nsp31396S1396ATcaGca11Q.80.000165
ORF1ab/nsp31396S1396ATcaGca11R.10.00009