CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = S1375S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31375S1375SS2193SsyntcTtcC2151940.9023266842-6844
ORF1ab/nsp31375S1375SS2193SsyntcTtcA215170.07906986842-6844
ORF1ab/nsp31375S1375SS2193SsyntcTtcG21540.01860476842-6844

Details of the mutation S1375S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31375S1375StcTtcC194215All0.000037
ORF1ab/nsp31375S1375StcTtcA17215All0.000003
ORF1ab/nsp31375S1375StcTtcG4215All0.000001
ORF1ab/nsp31375S1375StcTtcC5757B.1.177.60.055664
ORF1ab/nsp31375S1375StcTtcC1325AY.40.00002
ORF1ab/nsp31375S1375StcTtcA1225AY.40.000019
ORF1ab/nsp31375S1375StcTtcC2222AY.440.000134
ORF1ab/nsp31375S1375StcTtcC2020AY.116.10.006229
ORF1ab/nsp31375S1375StcTtcC1516B.1.10.000272
ORF1ab/nsp31375S1375StcTtcA116B.1.10.000018
ORF1ab/nsp31375S1375StcTtcC911B.1.617.20.000034
ORF1ab/nsp31375S1375StcTtcG111B.1.617.20.000004
ORF1ab/nsp31375S1375StcTtcA111B.1.617.20.000004
ORF1ab/nsp31375S1375StcTtcC66AY.250.000036
ORF1ab/nsp31375S1375StcTtcC55AY.50.000103
ORF1ab/nsp31375S1375StcTtcC45B.1.20.000035
ORF1ab/nsp31375S1375StcTtcG15B.1.20.000009
ORF1ab/nsp31375S1375StcTtcC33AY.1170.000254
ORF1ab/nsp31375S1375StcTtcC33B.10.000027
ORF1ab/nsp31375S1375StcTtcC33B.1.1.70.000003
ORF1ab/nsp31375S1375StcTtcA23B.1.5250.000226
ORF1ab/nsp31375S1375StcTtcC13B.1.5250.000113
ORF1ab/nsp31375S1375StcTtcC22AY.1030.000012
ORF1ab/nsp31375S1375StcTtcC22AY.230.000139
ORF1ab/nsp31375S1375StcTtcC22AY.570.001312
ORF1ab/nsp31375S1375StcTtcC22AY.60.000082
ORF1ab/nsp31375S1375StcTtcC22B.1.3510.000059
ORF1ab/nsp31375S1375StcTtcC22B.1.5960.000174
ORF1ab/nsp31375S1375StcTtcA110.055556
ORF1ab/nsp31375S1375StcTtcC11A.10.000282
ORF1ab/nsp31375S1375StcTtcC11A.30.002096
ORF1ab/nsp31375S1375StcTtcC11AE.80.000489
ORF1ab/nsp31375S1375StcTtcC11AY.1000.000046
ORF1ab/nsp31375S1375StcTtcC11AY.260.000028
ORF1ab/nsp31375S1375StcTtcC11AY.290.000016
ORF1ab/nsp31375S1375StcTtcC11AY.590.00053
ORF1ab/nsp31375S1375StcTtcC11AY.840.000437
ORF1ab/nsp31375S1375StcTtcC11B.1.1.3890.006061
ORF1ab/nsp31375S1375StcTtcC11B.1.1.500.000679
ORF1ab/nsp31375S1375StcTtcC11B.1.1770.000013
ORF1ab/nsp31375S1375StcTtcC11B.1.177.40.000211
ORF1ab/nsp31375S1375StcTtcC11B.1.1990.004132
ORF1ab/nsp31375S1375StcTtcC11B.1.2430.00007
ORF1ab/nsp31375S1375StcTtcC11B.1.351.20.000303
ORF1ab/nsp31375S1375StcTtcC11B.1.4290.000024
ORF1ab/nsp31375S1375StcTtcC11B.1.438.10.000107
ORF1ab/nsp31375S1375StcTtcG11B.1.466.20.000391
ORF1ab/nsp31375S1375StcTtcC11B.1.4730.019231
ORF1ab/nsp31375S1375StcTtcC11C.160.00106
ORF1ab/nsp31375S1375StcTtcG11C.36.30.000567
ORF1ab/nsp31375S1375StcTtcC11C.370.000116
ORF1ab/nsp31375S1375StcTtcC11P.10.000016