CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = S1333del1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31333S1333del1S2151del1delAgt-gt650.8333336716-6718
ORF1ab/nsp31333S1333del1S2151del1delAGt-At610.1666676716-6718

Details of the mutation S1333del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31333S1333del1Agt-gt56All0.000001
ORF1ab/nsp31333S1333del1AGt-At16All0
ORF1ab/nsp31333S1333del1Agt-gt11AY.30.00001
ORF1ab/nsp31333S1333del1Agt-gt11AY.430.000004
ORF1ab/nsp31333S1333del1AGt-At11AY.440.000006
ORF1ab/nsp31333S1333del1Agt-gt11AY.9.20.000037
ORF1ab/nsp31333S1333del1Agt-gt11B.1.20.000009
ORF1ab/nsp31333S1333del1Agt-gt11B.1.617.20.000004