CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = S1314G

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31314S1314GS2132GnonsynAgtGgt272627250.9996336659-6661
ORF1ab/nsp31314S1314GS2132GnonsynAgTGgA272610.0003668386659-6661

Details of the mutation S1314G within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31314S1314GAgtGgt27252726All0.000521
ORF1ab/nsp31314S1314GAgTGgA12726All0
ORF1ab/nsp31314S1314GAgtGgt685685B.1.1.70.000613
ORF1ab/nsp31314S1314GAgtGgt209209AY.460.021753
ORF1ab/nsp31314S1314GAgtGgt191191AY.440.001163
ORF1ab/nsp31314S1314GAgtGgt146146AY.40.000227
ORF1ab/nsp31314S1314GAgtGgt114114B.1.617.20.000429
ORF1ab/nsp31314S1314GAgtGgt9696AY.1030.000596
ORF1ab/nsp31314S1314GAgtGgt9595B.1.1.2320.172414
ORF1ab/nsp31314S1314GAgtGgt7373B.1.20.000643
ORF1ab/nsp31314S1314GAgtGgt7272B.1.4290.001694
ORF1ab/nsp31314S1314GAgtGgt5858B.1.4710.15847
ORF1ab/nsp31314S1314GAgtGgt5252AY.330.003472
ORF1ab/nsp31314S1314GAgtGgt5050B.10.000458
ORF1ab/nsp31314S1314GAgtGgt4747AY.710.022328
ORF1ab/nsp31314S1314GAgtGgt3939AY.430.000173
ORF1ab/nsp31314S1314GAgtGgt3636AY.260.001019
ORF1ab/nsp31314S1314GAgtGgt3333B.1.1.2140.00183
ORF1ab/nsp31314S1314GAgtGgt2828P.10.000441
ORF1ab/nsp31314S1314GAgtGgt2727AY.650.014392
ORF1ab/nsp31314S1314GAgtGgt2222AK.21
ORF1ab/nsp31314S1314GAgtGgt2222AY.250.000132
ORF1ab/nsp31314S1314GAgtGgt2121B.1.1.2410.043478
ORF1ab/nsp31314S1314GAgtGgt1818AY.470.00056
ORF1ab/nsp31314S1314GAgtGgt1717AY.290.000268
ORF1ab/nsp31314S1314GAgtGgt1717B.1.10.000308
ORF1ab/nsp31314S1314GAgtGgt1717C.36.30.009643
ORF1ab/nsp31314S1314GAgtGgt1616AY.30.000159
ORF1ab/nsp31314S1314GAgtGgt1616B.1.258.170.001664
ORF1ab/nsp31314S1314GAgtGgt1313AY.10.005144
ORF1ab/nsp31314S1314GAgtGgt1313B.1.6210.001151
ORF1ab/nsp31314S1314GAgtGgt1212AY.1200.000446
ORF1ab/nsp31314S1314GAgtGgt1212AY.200.000466
ORF1ab/nsp31314S1314GAgtGgt1212B.1.1600.000374
ORF1ab/nsp31314S1314GAgtGgt1212B.1.5960.001046
ORF1ab/nsp31314S1314GAgtGgt1111AY.1000.000506
ORF1ab/nsp31314S1314GAgtGgt1111AY.390.000272
ORF1ab/nsp31314S1314GAgtGgt1111P.1.70.003512
ORF1ab/nsp31314S1314GAgtGgt1010AY.50.000206
ORF1ab/nsp31314S1314GAgtGgt1010B.1.2580.000665
ORF1ab/nsp31314S1314GAgtGgt99AY.1020.000239
ORF1ab/nsp31314S1314GAgtGgt99B.1.2210.000639
ORF1ab/nsp31314S1314GAgtGgt88AY.1180.000501
ORF1ab/nsp31314S1314GAgtGgt88B.1.1770.000105
ORF1ab/nsp31314S1314GAgtGgt88B.1.3510.000238
ORF1ab/nsp31314S1314GAgtGgt88P.1.170.001294
ORF1ab/nsp31314S1314GAgtGgt77AY.1190.000247
ORF1ab/nsp31314S1314GAgtGgt77AY.420.000282
ORF1ab/nsp31314S1314GAgtGgt77B.1.177.860.001284
ORF1ab/nsp31314S1314GAgtGgt77B.1.466.20.002739
ORF1ab/nsp31314S1314GAgtGgt66AY.690.00112
ORF1ab/nsp31314S1314GAgtGgt66B.1.1.4320.007595
ORF1ab/nsp31314S1314GAgtGgt66B.1.5260.000141
ORF1ab/nsp31314S1314GAgtGgt66R.10.00054
ORF1ab/nsp31314S1314GAgtGgt55AY.4.20.000108
ORF1ab/nsp31314S1314GAgtGgt55AY.530.001438
ORF1ab/nsp31314S1314GAgtGgt55AY.90.000338
ORF1ab/nsp31314S1314GAgtGgt55AY.9.10.000419
ORF1ab/nsp31314S1314GAgtGgt55AY.9.20.000184
ORF1ab/nsp31314S1314GAgtGgt55B.1.1.1760.002197
ORF1ab/nsp31314S1314GAgtGgt55B.1.1.3170.002058
ORF1ab/nsp31314S1314GAgtGgt55B.1.1.5190.000199
ORF1ab/nsp31314S1314GAgtGgt55C.370.00058
ORF1ab/nsp31314S1314GAgtGgt55P.1.100.001347
ORF1ab/nsp31314S1314GAgtGgt44AY.140.000352
ORF1ab/nsp31314S1314GAgtGgt44AY.3.10.000341
ORF1ab/nsp31314S1314GAgtGgt44AY.450.000487
ORF1ab/nsp31314S1314GAgtGgt44AY.46.60.000289
ORF1ab/nsp31314S1314GAgtGgt44AY.610.000419
ORF1ab/nsp31314S1314GAgtGgt44AY.750.000224
ORF1ab/nsp31314S1314GAgtGgt44B.1.1.3690.001785
ORF1ab/nsp31314S1314GAgtGgt44B.1.2100.008529
ORF1ab/nsp31314S1314GAgtGgt44B.1.2430.000278
ORF1ab/nsp31314S1314GAgtGgt44B.1.4280.004082
ORF1ab/nsp31314S1314GAgtGgt33AY.1070.001398
ORF1ab/nsp31314S1314GAgtGgt33AY.230.000209
ORF1ab/nsp31314S1314GAgtGgt33AY.34.10.00153
ORF1ab/nsp31314S1314GAgtGgt33AY.540.000286
ORF1ab/nsp31314S1314GAgtGgt33B.1.1.250.001706
ORF1ab/nsp31314S1314GAgtGgt33B.1.1.3110.001074
ORF1ab/nsp31314S1314GAgtGgt33B.1.1.3880.136364
ORF1ab/nsp31314S1314GAgtGgt33B.1.360.000438
ORF1ab/nsp31314S1314GAgtGgt33B.1.36.80.003
ORF1ab/nsp31314S1314GAgtGgt33B.1.3890.003006
ORF1ab/nsp31314S1314GAgtGgt33B.1.4270.000151
ORF1ab/nsp31314S1314GAgtGgt33B.1.5250.000339
ORF1ab/nsp31314S1314GAgtGgt22AY.1010.000981
ORF1ab/nsp31314S1314GAgtGgt22AY.1090.001479
ORF1ab/nsp31314S1314GAgtGgt22AY.120.000632
ORF1ab/nsp31314S1314GAgtGgt22AY.160.000759
ORF1ab/nsp31314S1314GAgtGgt22AY.370.000632
ORF1ab/nsp31314S1314GAgtGgt22AY.380.000999
ORF1ab/nsp31314S1314GAgtGgt22AY.39.10.000079
ORF1ab/nsp31314S1314GAgtGgt22AY.4.2.10.000298
ORF1ab/nsp31314S1314GAgtGgt22AY.740.000231
ORF1ab/nsp31314S1314GAgtGgt22AY.830.003448
ORF1ab/nsp31314S1314GAgtGgt22AY.880.001768
ORF1ab/nsp31314S1314GAgtGgt22AY.920.000575
ORF1ab/nsp31314S1314GAgtGgt22B.1.1.2740.010101
ORF1ab/nsp31314S1314GAgtGgt22B.1.1.3160.00185
ORF1ab/nsp31314S1314GAgtGgt22B.1.1.3220.017544
ORF1ab/nsp31314S1314GAgtGgt22B.1.1.3890.012121
ORF1ab/nsp31314S1314GAgtGgt22B.1.1.390.001019
ORF1ab/nsp31314S1314GAgtGgt22B.1.177.90.002663
ORF1ab/nsp31314S1314GAgtGgt22B.1.2410.001623
ORF1ab/nsp31314S1314GAgtGgt22B.1.258.40.006897
ORF1ab/nsp31314S1314GAgtGgt22B.1.2790.001027
ORF1ab/nsp31314S1314GAgtGgt22B.1.4360.002058
ORF1ab/nsp31314S1314GAgtGgt22B.1.438.10.000215
ORF1ab/nsp31314S1314GAgtGgt22B.1.4970.00063
ORF1ab/nsp31314S1314GAgtGgt22B.1.5750.000607
ORF1ab/nsp31314S1314GAgtGgt22B.1.619.10.001283
ORF1ab/nsp31314S1314GAgtGgt22B.1.6280.000705
ORF1ab/nsp31314S1314GAgtGgt22B.1.80.003945
ORF1ab/nsp31314S1314GAgtGgt22P.1.10.000635
ORF1ab/nsp31314S1314GAgtGgt22P.1.20.002312
ORF1ab/nsp31314S1314GAgtGgt22P.20.000373
ORF1ab/nsp31314S1314GAgtGgt22Q.10.000253
ORF1ab/nsp31314S1314GAgtGgt22Q.80.00033
ORF1ab/nsp31314S1314GAgtGgt11A0.000387
ORF1ab/nsp31314S1314GAgtGgt11A.23.10.000704
ORF1ab/nsp31314S1314GAgtGgt11AY.1130.000142
ORF1ab/nsp31314S1314GAgtGgt11AY.1140.000231
ORF1ab/nsp31314S1314GAgtGgt11AY.1160.000287
ORF1ab/nsp31314S1314GAgtGgt11AY.1170.000085
ORF1ab/nsp31314S1314GAgtGgt11AY.120.10.000321
ORF1ab/nsp31314S1314GAgtGgt11AY.1210.000135
ORF1ab/nsp31314S1314GAgtGgt11AY.280.00189
ORF1ab/nsp31314S1314GAgtGgt11AY.29.10.000221
ORF1ab/nsp31314S1314GAgtGgt11AY.300.000396
ORF1ab/nsp31314S1314GAgtGgt11AY.4.50.000107
ORF1ab/nsp31314S1314GAgtGgt11AY.46.30.000934
ORF1ab/nsp31314S1314GAgtGgt11AY.46.40.000165
ORF1ab/nsp31314S1314GAgtGgt11AY.5.30.000337
ORF1ab/nsp31314S1314GAgtGgt11AY.5.40.000277
ORF1ab/nsp31314S1314GAgtGgt11AY.510.000909
ORF1ab/nsp31314S1314GAgtGgt11AY.550.000917
ORF1ab/nsp31314S1314GAgtGgt11AY.590.00053
ORF1ab/nsp31314S1314GAgtGgt11AY.60.000041
ORF1ab/nsp31314S1314GAgtGgt11AY.7.20.000559
ORF1ab/nsp31314S1314GAgtGgt11AY.770.001127
ORF1ab/nsp31314S1314GAgtGgt11AY.790.001211
ORF1ab/nsp31314S1314GAgtGgt11AY.840.000437
ORF1ab/nsp31314S1314GAgtGgt11AY.850.000427
ORF1ab/nsp31314S1314GAgtGgt11AY.960.002075
ORF1ab/nsp31314S1314GAgtGgt11AY.98.10.000048
ORF1ab/nsp31314S1314GAgtGgt11AZ.50.003509
ORF1ab/nsp31314S1314GAgtGgt11B0.000128
ORF1ab/nsp31314S1314GAgtGgt11B.1.1.100.001115
ORF1ab/nsp31314S1314GAgtGgt11B.1.1.1710.003676
ORF1ab/nsp31314S1314GAgtGgt11B.1.1.1920.002309
ORF1ab/nsp31314S1314GAgtGgt11B.1.1.2200.001859
ORF1ab/nsp31314S1314GAgtGgt11B.1.1.2530.002506
ORF1ab/nsp31314S1314GAgtGgt11B.1.1.280.000311
ORF1ab/nsp31314S1314GAgtGgt11B.1.1.2840.000107
ORF1ab/nsp31314S1314GAgtGgt11B.1.1.2890.002083
ORF1ab/nsp31314S1314GAgtGgt11B.1.1.2990.012195
ORF1ab/nsp31314S1314GAgtGgt11B.1.1.3060.000438
ORF1ab/nsp31314S1314GAgtGgt11B.1.1.3260.001761
ORF1ab/nsp31314S1314GAgtGgt11B.1.1.3720.000689
ORF1ab/nsp31314S1314GAgtGgt11B.1.1.4020.011111
ORF1ab/nsp31314S1314GAgtGgt11B.1.1.4130.006897
ORF1ab/nsp31314S1314GAgtGgt11B.1.1.4210.030303
ORF1ab/nsp31314S1314GAgtGgt11B.1.1.4340.000349
ORF1ab/nsp31314S1314GAgtGgt11B.1.1.460.004367
ORF1ab/nsp31314S1314GAgtGgt11B.1.1.630.000386
ORF1ab/nsp31314S1314GAgtGgt11B.1.1.700.000341
ORF1ab/nsp31314S1314GAgtGgt11B.1.1280.000635
ORF1ab/nsp31314S1314GAgtGgt11B.1.1390.000733
ORF1ab/nsp31314S1314GAgtGgt11B.1.177.210.000076
ORF1ab/nsp31314S1314GAgtGgt11B.1.177.440.000519
ORF1ab/nsp31314S1314GAgtGgt11B.1.177.520.001757
ORF1ab/nsp31314S1314GAgtGgt11B.1.177.750.001041
ORF1ab/nsp31314S1314GAgtGgt11B.1.177.770.000726
ORF1ab/nsp31314S1314GAgtGgt11B.1.177.870.000728
ORF1ab/nsp31314S1314GAgtGgt11B.1.2340.000132
ORF1ab/nsp31314S1314GAgtGgt11B.1.258.110.000396
ORF1ab/nsp31314S1314GAgtGgt11B.1.258.30.001675
ORF1ab/nsp31314S1314GAgtGgt11B.1.2890.00266
ORF1ab/nsp31314S1314GAgtGgt11B.1.3110.000275
ORF1ab/nsp31314S1314GAgtGgt11B.1.3240.001605
ORF1ab/nsp31314S1314GAgtGgt11B.1.36.220.001208
ORF1ab/nsp31314S1314GAgtGgt11B.1.36.290.000517
ORF1ab/nsp31314S1314GAgtGgt11B.1.36.330.007576
ORF1ab/nsp31314S1314GAgtGgt11B.1.3750.00082
ORF1ab/nsp31314S1314GAgtGgt11B.1.4000.000429
ORF1ab/nsp31314S1314GAgtGgt11B.1.4560.003268
ORF1ab/nsp31314S1314GAgTGgA11B.1.4620.007246
ORF1ab/nsp31314S1314GAgtGgt11B.1.4680.005714
ORF1ab/nsp31314S1314GAgtGgt11B.1.4990.00105
ORF1ab/nsp31314S1314GAgtGgt11B.1.5010.007353
ORF1ab/nsp31314S1314GAgtGgt11B.1.5300.007143
ORF1ab/nsp31314S1314GAgtGgt11B.1.5340.0125
ORF1ab/nsp31314S1314GAgtGgt11B.1.5520.015152
ORF1ab/nsp31314S1314GAgtGgt11B.1.5770.000687
ORF1ab/nsp31314S1314GAgtGgt11B.1.5800.004065
ORF1ab/nsp31314S1314GAgtGgt11B.1.5950.000261
ORF1ab/nsp31314S1314GAgtGgt11B.1.6000.005848
ORF1ab/nsp31314S1314GAgtGgt11B.1.6090.000479
ORF1ab/nsp31314S1314GAgtGgt11B.1.617.10.000129
ORF1ab/nsp31314S1314GAgtGgt11B.1.6190.000871
ORF1ab/nsp31314S1314GAgtGgt11B.30.000831
ORF1ab/nsp31314S1314GAgtGgt11B.60.00091
ORF1ab/nsp31314S1314GAgtGgt11C.40.01
ORF1ab/nsp31314S1314GAgtGgt11D.20.000075
ORF1ab/nsp31314S1314GAgtGgt11N.50.001767
ORF1ab/nsp31314S1314GAgtGgt11P.1.150.000232

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.