CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = S1285S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31285S1285SS2103SsyntcTtcC1231100.8943096572-6574
ORF1ab/nsp31285S1285SS2103SsyntcTtcA12380.06504066572-6574
ORF1ab/nsp31285S1285SS2103SsyntcTtcG12350.04065046572-6574

Details of the mutation S1285S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31285S1285StcTtcC110123All0.000021
ORF1ab/nsp31285S1285StcTtcA8123All0.000002
ORF1ab/nsp31285S1285StcTtcG5123All0.000001
ORF1ab/nsp31285S1285StcTtcC5252AY.200.002021
ORF1ab/nsp31285S1285StcTtcC67B.1.1.70.000005
ORF1ab/nsp31285S1285StcTtcG17B.1.1.70.000001
ORF1ab/nsp31285S1285StcTtcC77C.36.30.003971
ORF1ab/nsp31285S1285StcTtcC44AY.1070.001864
ORF1ab/nsp31285S1285StcTtcC44AY.40.000006
ORF1ab/nsp31285S1285StcTtcC44B.1.617.20.000015
ORF1ab/nsp31285S1285StcTtcC23AY.430.000009
ORF1ab/nsp31285S1285StcTtcG13AY.430.000004
ORF1ab/nsp31285S1285StcTtcC33AY.9.10.000251
ORF1ab/nsp31285S1285StcTtcC23B.10.000018
ORF1ab/nsp31285S1285StcTtcA13B.10.000009
ORF1ab/nsp31285S1285StcTtcC33B.1.1.4200.003018
ORF1ab/nsp31285S1285StcTtcA23B.1.1600.000062
ORF1ab/nsp31285S1285StcTtcC13B.1.1600.000031
ORF1ab/nsp31285S1285StcTtcG33B.1.1770.00004
ORF1ab/nsp31285S1285StcTtcC33B.1.20.000026
ORF1ab/nsp31285S1285StcTtcA22AY.250.000012
ORF1ab/nsp31285S1285StcTtcC22B.1.177.120.000303
ORF1ab/nsp31285S1285StcTtcC22B.1.6370.000146
ORF1ab/nsp31285S1285StcTtcC22C.300.003454
ORF1ab/nsp31285S1285StcTtcC22P.1.170.000324
ORF1ab/nsp31285S1285StcTtcC11AY.1020.000027
ORF1ab/nsp31285S1285StcTtcC11AY.1130.000142
ORF1ab/nsp31285S1285StcTtcC11AY.1190.000035
ORF1ab/nsp31285S1285StcTtcC11AY.260.000028
ORF1ab/nsp31285S1285StcTtcA11AY.270.000065
ORF1ab/nsp31285S1285StcTtcC11AY.440.000006
ORF1ab/nsp31285S1285StcTtcC11AY.470.000031
ORF1ab/nsp31285S1285StcTtcC11AY.700.000209
ORF1ab/nsp31285S1285StcTtcC11AY.990.001049
ORF1ab/nsp31285S1285StcTtcC11B.1.1.5190.00004
ORF1ab/nsp31285S1285StcTtcA11B.1.177.810.000189
ORF1ab/nsp31285S1285StcTtcC11B.1.2100.002132
ORF1ab/nsp31285S1285StcTtcC11B.1.258.170.000104
ORF1ab/nsp31285S1285StcTtcA11B.1.619.10.000641