CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1285 | S1285F | S2103F | nonsyn | tCt | tTt | 16775 | 16774 | 0.99994 | 6572-6574 |
ORF1ab/nsp3 | 1285 | S1285F | S2103F | nonsyn | tCT | tTC | 16775 | 1 | 0.0000596125 | 6572-6574 |
Details of the mutation S1285F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 16774 | 16775 | All | 0.003208 |
ORF1ab/nsp3 | 1285 | S1285F | tCT | tTC | 1 | 16775 | All | 0 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 4596 | 4596 | B.1.1.7 | 0.004114 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 3311 | 3311 | AY.4 | 0.005153 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1335 | 1336 | B.1.617.2 | 0.005027 |
ORF1ab/nsp3 | 1285 | S1285F | tCT | tTC | 1 | 1336 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 815 | 815 | AY.73 | 0.542249 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 553 | 553 | B.1.1.326 | 0.973592 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 471 | 471 | AY.43 | 0.002087 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 441 | 441 | B.1.36.39 | 0.977827 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 345 | 345 | B.1.429 | 0.008117 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 243 | 243 | B.1.2 | 0.00214 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 239 | 239 | B.1 | 0.002189 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 239 | 239 | B.1.621 | 0.021156 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 232 | 232 | B.1.526 | 0.005453 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 226 | 226 | B.1.1.232 | 0.410163 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 220 | 220 | AY.102 | 0.005833 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 200 | 200 | B.1.1.8 | 0.716846 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 177 | 177 | P.1 | 0.002788 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 168 | 168 | AY.44 | 0.001023 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 168 | 168 | B.1.1.519 | 0.006671 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 156 | 156 | B.1.1 | 0.00283 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 140 | 140 | AY.3 | 0.001392 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 98 | 98 | AY.103 | 0.000608 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 93 | 93 | AY.25 | 0.000559 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 83 | 83 | B.1.1.234 | 1 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 79 | 79 | AK.1 | 1 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 69 | 69 | B.1.177 | 0.000909 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 59 | 59 | AY.75 | 0.003305 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 59 | 59 | B.1.351 | 0.001754 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 56 | 56 | AY.39 | 0.001384 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 52 | 52 | B.1.1.70 | 0.017735 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 50 | 50 | B.1.525 | 0.005658 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 50 | 50 | C.37 | 0.005803 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 48 | 48 | Q.1 | 0.006064 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 47 | 47 | AY.120 | 0.001747 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 42 | 42 | AY.117 | 0.00355 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 40 | 40 | B.1.537 | 0.8 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 40 | 40 | B.1.582 | 0.019627 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 39 | 39 | AY.4.2 | 0.000846 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 39 | 39 | B.1.126 | 0.049745 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 36 | 36 | AY.26 | 0.001019 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 36 | 36 | N.9 | 0.214286 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 35 | 35 | B.1.221 | 0.002486 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 34 | 34 | B.1.637 | 0.002484 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 32 | 32 | AY.6 | 0.001316 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 32 | 32 | P.1.15 | 0.007435 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 26 | 26 | B.1.1.214 | 0.001442 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 26 | 26 | B.1.177.55 | 0.060606 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 25 | 25 | B.1.427 | 0.001262 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 24 | 24 | AY.29 | 0.000379 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 23 | 23 | AY.20 | 0.000894 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 23 | 23 | B.1.1.226 | 0.133721 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 22 | 22 | AK.2 | 1 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 22 | 22 | AY.119 | 0.000777 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 22 | 22 | AY.5 | 0.000454 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 22 | 22 | B.1.1.305 | 0.084942 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 21 | 21 | AY.118 | 0.001316 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 20 | 20 | AY.61 | 0.002096 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 18 | 18 | AY.100 | 0.000828 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 18 | 18 | AY.34.1 | 0.009179 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 17 | 17 | AY.113 | 0.002421 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 17 | 17 | AY.42 | 0.000684 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 17 | 17 | AY.47 | 0.000529 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 17 | 17 | B.6.8 | 0.140496 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 16 | 16 | AY.98.1 | 0.000775 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 15 | 15 | P.1.14 | 0.000717 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 14 | 14 | B.1.1.28 | 0.004357 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 14 | 14 | B.1.160 | 0.000437 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 14 | 14 | B.1.177.54 | 0.00849 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 13 | 13 | AY.53 | 0.003738 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 13 | 13 | B.1.1.222 | 0.002652 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 13 | 13 | B.1.243 | 0.000905 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 12 | 12 | AY.46 | 0.001249 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 12 | 12 | AY.7.1 | 0.001352 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 11 | 11 | AY.45 | 0.001339 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 11 | 11 | B.1.1.176 | 0.004833 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 10 | 10 | AY.65 | 0.00533 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 10 | 10 | B.1.1.121 | 0.024272 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 10 | 10 | B.1.406 | 0.060606 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 10 | 10 | P.1.17 | 0.001618 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 10 | 10 | Q.8 | 0.001649 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 9 | 9 | AY.75.1 | 0.001623 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 9 | 9 | AY.84 | 0.003937 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 9 | 9 | AY.93 | 0.002458 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 9 | 9 | B.1.1.318 | 0.002716 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 9 | 9 | B.1.258 | 0.000599 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 9 | 9 | B.1.617.1 | 0.001161 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 8 | 8 | AY.120.1 | 0.002568 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 8 | 8 | AY.85 | 0.003417 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 8 | 8 | B.1.1.416 | 0.00724 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 8 | 8 | B.1.234 | 0.001056 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 7 | 7 | AY.101 | 0.003433 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 7 | 7 | AY.121 | 0.000947 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 7 | 7 | AY.23 | 0.000488 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 7 | 7 | AY.41 | 0.002058 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 7 | 7 | AY.70 | 0.00146 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 7 | 7 | AY.9.1 | 0.000586 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 7 | 7 | AY.91 | 0.005113 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 7 | 7 | B.1.1.393 | 0.777778 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 7 | 7 | B.1.1.429 | 0.032258 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 7 | 7 | B.1.258.17 | 0.000728 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 7 | 7 | B.1.36.29 | 0.003621 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 6 | 6 | AY.107 | 0.002796 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 6 | 6 | AY.14 | 0.000528 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 6 | 6 | AY.33 | 0.000401 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 6 | 6 | AY.4.5 | 0.000645 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 6 | 6 | AY.54 | 0.000572 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 6 | 6 | B.1.265 | 0.007624 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 6 | 6 | B.1.36.17 | 0.002964 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 6 | 6 | B.1.570 | 0.017647 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 6 | 6 | B.1.596 | 0.000523 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 6 | 6 | P.2 | 0.00112 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 6 | 6 | Q.4 | 0.002729 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 5 | 5 | A.2.5 | 0.002495 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 5 | 5 | AD.2 | 0.001095 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 5 | 5 | AY.13 | 0.000805 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 5 | 5 | AY.16 | 0.001898 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 5 | 5 | B.1.1.207 | 0.00591 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 5 | 5 | B.1.1.225 | 0.035971 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 5 | 5 | B.1.1.317 | 0.002058 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 5 | 5 | B.1.1.398 | 0.016129 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 5 | 5 | B.1.177.33 | 0.008224 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 5 | 5 | B.1.36.8 | 0.005 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 5 | 5 | R.1 | 0.00045 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 4 | 4 | AY.114 | 0.000924 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 4 | 4 | AY.34 | 0.000388 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 4 | 4 | AY.46.4 | 0.000658 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 4 | 4 | AY.98 | 0.000316 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 4 | 4 | B.1.1.216 | 0.003562 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 4 | 4 | B.1.1.269 | 0.005413 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 4 | 4 | B.1.1.385 | 0.017857 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 4 | 4 | B.1.1.420 | 0.004024 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 4 | 4 | B.1.36 | 0.000584 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 4 | 4 | P.1.12 | 0.001936 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 4 | 4 | P.1.2 | 0.004624 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 4 | 4 | P.1.4 | 0.003906 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 4 | 4 | P.7 | 0.017467 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 4 | 4 | Q.3 | 0.00058 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 3 | 3 | A.1 | 0.000846 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 3 | 3 | AY.109 | 0.002219 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 3 | 3 | AY.110 | 0.000338 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 3 | 3 | AY.16.1 | 0.00141 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 3 | 3 | AY.24 | 0.001293 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 3 | 3 | AY.27 | 0.000194 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 3 | 3 | AY.32 | 0.001597 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 3 | 3 | AY.4.4 | 0.001227 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 3 | 3 | AY.59 | 0.001589 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 3 | 3 | AY.68 | 0.000821 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 3 | 3 | AY.69 | 0.00056 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 3 | 3 | AY.71 | 0.001425 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 3 | 3 | AY.74 | 0.000347 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 3 | 3 | AY.9.2 | 0.00011 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 3 | 3 | B.1.1.115 | 0.026786 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 3 | 3 | B.1.1.263 | 0.004673 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 3 | 3 | B.1.1.316 | 0.002775 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 3 | 3 | B.1.1.37 | 0.000579 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 3 | 3 | B.1.110.3 | 0.002155 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 3 | 3 | B.1.177.4 | 0.000633 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 3 | 3 | B.1.177.57 | 0.000843 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 3 | 3 | B.1.298 | 0.006342 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 3 | 3 | B.1.351.2 | 0.000908 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 3 | 3 | B.1.438.1 | 0.000322 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 3 | 3 | B.1.524 | 0.004219 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 3 | 3 | B.1.564 | 0.001278 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 3 | 3 | B.1.6 | 0.051724 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 3 | 3 | C.36 | 0.002732 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 3 | 3 | P.1.7 | 0.000958 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 3 | 3 | P.4 | 0.011407 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | A.28 | 0.005291 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | AY.10 | 0.00106 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | AY.116 | 0.000574 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | AY.12 | 0.000632 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | AY.4.3 | 0.001684 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | AY.66 | 0.002139 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | AY.77 | 0.002255 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | AY.79 | 0.002421 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | AY.88 | 0.001768 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | AY.99 | 0.002099 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | B.1.1.159 | 0.009346 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | B.1.1.243 | 0.008163 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | B.1.1.255 | 0.006061 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | B.1.1.284 | 0.000215 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | B.1.1.374 | 0.004751 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | B.1.177.19 | 0.002861 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | B.1.177.36 | 0.032258 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | B.1.177.43 | 0.002954 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | B.1.177.46 | 0.001837 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | B.1.177.60 | 0.000437 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | B.1.177.80 | 0.003824 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | B.1.177.9 | 0.002663 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | B.1.240 | 0.000431 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | B.1.305 | 0.004301 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | B.1.349 | 0.00143 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | B.1.360 | 0.025316 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | B.1.369 | 0.00057 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | B.1.375 | 0.001639 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | B.1.381 | 0.015625 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | B.1.404 | 0.002604 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | B.1.416 | 0.002538 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | B.1.565 | 0.001621 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | B.1.575.2 | 0.009615 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | B.1.602 | 0.013072 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | B.1.628 | 0.000705 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | B.1.632 | 0.013423 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | B.28 | 0.006557 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | B.6 | 0.00182 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 2 | 2 | N.5 | 0.003534 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | AH.2 | 0.012048 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | AY.104 | 0.001984 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | AY.108 | 0.001103 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | AY.22 | 0.002092 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | AY.56 | 0.001605 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | AY.87 | 0.000833 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | AY.89 | 0.004902 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.1.129 | 0.009174 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.1.141 | 0.002012 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.1.152 | 0.04 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.1.161 | 0.003534 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.1.164 | 0.005155 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.1.186 | 0.003436 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.1.189 | 0.001513 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.1.221 | 0.010101 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.1.27 | 0.00565 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.1.272 | 0.005208 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.1.273 | 0.006757 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.1.288 | 0.001916 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.1.312 | 0.001912 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.1.340 | 0.045455 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.1.349 | 0.010309 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.1.368 | 0.003086 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.1.406 | 0.006494 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.1.58 | 0.005376 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.1.63 | 0.000386 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.1.98 | 0.018519 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.111 | 0.001175 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.146 | 0.004237 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.160.9 | 0.007194 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.177.29 | 0.066667 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.177.32 | 0.00135 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.177.38 | 0.010417 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.177.42 | 0.000894 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.177.5 | 0.001242 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.177.58 | 0.001332 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.177.62 | 0.001192 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.177.67 | 0.007634 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.177.82 | 0.000477 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.177.87 | 0.000728 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.210 | 0.002132 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.221.1 | 0.002907 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.258.2 | 0.004505 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.36.1 | 0.00114 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.362 | 0.001541 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.388 | 0.090909 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.400 | 0.000429 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.400.1 | 0.015152 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.428 | 0.00102 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.428.3 | 0.012821 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.435 | 0.011364 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.448 | 0.002625 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.468 | 0.005714 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.471 | 0.002732 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.473 | 0.019231 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.497 | 0.000315 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.503 | 0.002488 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.521 | 0.004975 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.612 | 0.002653 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.4 | 0.002208 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.45 | 0.003831 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.50 | 0.111111 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | B.56 | 0.028571 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | P.1.16 | 0.000374 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | P.3 | 0.001595 |
ORF1ab/nsp3 | 1285 | S1285F | tCt | tTt | 1 | 1 | Q.7 | 0.001111 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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