CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = S1230P

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31230S1230PS2048PnonsynTctCct1751730.9885716407-6409
ORF1ab/nsp31230S1230PS2048PnonsynTcTCcA17510.005714296407-6409
ORF1ab/nsp31230S1230PS2048PnonsynTcTCcC17510.005714296407-6409

Details of the mutation S1230P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31230S1230PTctCct173175All0.000033
ORF1ab/nsp31230S1230PTcTCcC1175All0
ORF1ab/nsp31230S1230PTcTCcA1175All0
ORF1ab/nsp31230S1230PTctCct3838B.1.1.70.000034
ORF1ab/nsp31230S1230PTctCct2929B.1.3600.367089
ORF1ab/nsp31230S1230PTctCct1212AY.90.000811
ORF1ab/nsp31230S1230PTctCct1010P.10.000158
ORF1ab/nsp31230S1230PTctCct88AY.1030.00005
ORF1ab/nsp31230S1230PTctCct88B.10.000073
ORF1ab/nsp31230S1230PTctCct77AY.440.000043
ORF1ab/nsp31230S1230PTctCct55AY.370.00158
ORF1ab/nsp31230S1230PTctCct55AY.40.000008
ORF1ab/nsp31230S1230PTctCct55B.1.1.10.001633
ORF1ab/nsp31230S1230PTctCct44B.1.20.000035
ORF1ab/nsp31230S1230PTctCct44B.1.2430.000278
ORF1ab/nsp31230S1230PTctCct33AY.290.000047
ORF1ab/nsp31230S1230PTctCct33AY.30.00003
ORF1ab/nsp31230S1230PTctCct23B.1.1770.000026
ORF1ab/nsp31230S1230PTcTCcC13B.1.1770.000013
ORF1ab/nsp31230S1230PTctCct33B.1.177.40.000633
ORF1ab/nsp31230S1230PTctCct22AY.430.000009
ORF1ab/nsp31230S1230PTctCct22AY.9.20.000073
ORF1ab/nsp31230S1230PTctCct22B.1.177.810.000379
ORF1ab/nsp31230S1230PTctCct22B.1.2580.000133
ORF1ab/nsp31230S1230PTctCct110.055556
ORF1ab/nsp31230S1230PTctCct11AY.1100.000113
ORF1ab/nsp31230S1230PTctCct11AY.1130.000142
ORF1ab/nsp31230S1230PTctCct11AY.140.000088
ORF1ab/nsp31230S1230PTctCct11AY.190.00114
ORF1ab/nsp31230S1230PTctCct11AY.250.000006
ORF1ab/nsp31230S1230PTctCct11AY.260.000028
ORF1ab/nsp31230S1230PTctCct11AY.4.20.000022
ORF1ab/nsp31230S1230PTctCct11AY.420.00004
ORF1ab/nsp31230S1230PTctCct11AY.60.000041
ORF1ab/nsp31230S1230PTcTCcA11AY.790.001211
ORF1ab/nsp31230S1230PTctCct11AY.98.10.000048
ORF1ab/nsp31230S1230PTctCct11B.1.10.000018
ORF1ab/nsp31230S1230PTctCct11B.1.1.2440.015385
ORF1ab/nsp31230S1230PTctCct11B.1.1.630.000386
ORF1ab/nsp31230S1230PTctCct11B.1.1600.000031
ORF1ab/nsp31230S1230PTctCct11B.1.5260.000024
ORF1ab/nsp31230S1230PTctCct11B.1.5950.000261
ORF1ab/nsp31230S1230PTctCct11B.1.617.20.000004
ORF1ab/nsp31230S1230PTctCct11C.36.30.000567