CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = S1230F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31230S1230FS2048FnonsyntCttTt34945349440.9999716407-6409
ORF1ab/nsp31230S1230FS2048FnonsyntCTtTC3494510.00002861646407-6409

Details of the mutation S1230F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31230S1230FtCttTt3494434945All0.006683
ORF1ab/nsp31230S1230FtCTtTC134945All0
ORF1ab/nsp31230S1230FtCttTt2371923719AY.1200.881846
ORF1ab/nsp31230S1230FtCttTt34243425AY.40.005329
ORF1ab/nsp31230S1230FtCTtTC13425AY.40.000002
ORF1ab/nsp31230S1230FtCttTt30063006AY.120.10.965008
ORF1ab/nsp31230S1230FtCttTt20012001AY.120.2.10.99701
ORF1ab/nsp31230S1230FtCttTt704704AY.120.20.904884
ORF1ab/nsp31230S1230FtCttTt549549AY.1030.003409
ORF1ab/nsp31230S1230FtCttTt387387B.1.617.20.001457
ORF1ab/nsp31230S1230FtCttTt314314B.1.1.70.000281
ORF1ab/nsp31230S1230FtCttTt152152B.10.001392
ORF1ab/nsp31230S1230FtCttTt8080B.1.1770.001053
ORF1ab/nsp31230S1230FtCttTt6161AY.30.000607
ORF1ab/nsp31230S1230FtCttTt4949AY.320.026092
ORF1ab/nsp31230S1230FtCttTt3838AY.1190.001342
ORF1ab/nsp31230S1230FtCttTt3636AY.4.20.000781
ORF1ab/nsp31230S1230FtCttTt3333AY.430.000146
ORF1ab/nsp31230S1230FtCttTt2929Q.10.003663
ORF1ab/nsp31230S1230FtCttTt2323B.1.4290.000541
ORF1ab/nsp31230S1230FtCttTt1919AY.1020.000504
ORF1ab/nsp31230S1230FtCttTt1616AY.260.000453
ORF1ab/nsp31230S1230FtCttTt1616AY.390.000395
ORF1ab/nsp31230S1230FtCttTt1515AY.440.000091
ORF1ab/nsp31230S1230FtCttTt1414AY.4.50.001505
ORF1ab/nsp31230S1230FtCttTt1414B.1.5260.000329
ORF1ab/nsp31230S1230FtCttTt1212AY.90.000811
ORF1ab/nsp31230S1230FtCttTt1111AY.50.000227
ORF1ab/nsp31230S1230FtCttTt1111AY.60.000452
ORF1ab/nsp31230S1230FtCttTt1111B.1.1.1650.169231
ORF1ab/nsp31230S1230FtCttTt99AY.460.000937
ORF1ab/nsp31230S1230FtCttTt88AY.1000.000368
ORF1ab/nsp31230S1230FtCttTt77AY.250.000042
ORF1ab/nsp31230S1230FtCttTt77B.1.20.000062
ORF1ab/nsp31230S1230FtCttTt66B.1.10.000109
ORF1ab/nsp31230S1230FtCttTt66B.1.2400.001293
ORF1ab/nsp31230S1230FtCttTt66B.1.3510.000178
ORF1ab/nsp31230S1230FtCttTt66P.10.000095
ORF1ab/nsp31230S1230FtCttTt55AY.230.000349
ORF1ab/nsp31230S1230FtCttTt55AY.420.000201
ORF1ab/nsp31230S1230FtCttTt55AY.46.10.005133
ORF1ab/nsp31230S1230FtCttTt55AY.750.00028
ORF1ab/nsp31230S1230FtCttTt55B.1.1.5190.000199
ORF1ab/nsp31230S1230FtCttTt55B.1.2390.006105
ORF1ab/nsp31230S1230FtCttTt44AY.1170.000338
ORF1ab/nsp31230S1230FtCttTt44AY.450.000487
ORF1ab/nsp31230S1230FtCttTt44AY.540.000381
ORF1ab/nsp31230S1230FtCttTt44AY.790.004843
ORF1ab/nsp31230S1230FtCttTt44B.1.243.10.088889
ORF1ab/nsp31230S1230FtCttTt44B.1.6090.001918
ORF1ab/nsp31230S1230FtCttTt33AY.1060.001005
ORF1ab/nsp31230S1230FtCttTt33AY.470.000093
ORF1ab/nsp31230S1230FtCttTt33AY.920.000862
ORF1ab/nsp31230S1230FtCttTt33AY.99.20.000276
ORF1ab/nsp31230S1230FtCttTt33B.1.360.000438
ORF1ab/nsp31230S1230FtCttTt22AY.1100.000225
ORF1ab/nsp31230S1230FtCttTt22AY.200.000078
ORF1ab/nsp31230S1230FtCttTt22AY.3.10.000171
ORF1ab/nsp31230S1230FtCttTt22AY.39.10.000079
ORF1ab/nsp31230S1230FtCttTt22AY.5.30.000675
ORF1ab/nsp31230S1230FtCttTt22AY.680.000547
ORF1ab/nsp31230S1230FtCttTt22AY.840.000875
ORF1ab/nsp31230S1230FtCttTt22B.1.1.2050.007435
ORF1ab/nsp31230S1230FtCttTt22B.1.1.3060.000877
ORF1ab/nsp31230S1230FtCttTt22B.1.1.700.000682
ORF1ab/nsp31230S1230FtCttTt22B.1.1100.00905
ORF1ab/nsp31230S1230FtCttTt22B.1.2580.000133
ORF1ab/nsp31230S1230FtCttTt22B.1.466.20.000782
ORF1ab/nsp31230S1230FtCttTt22B.1.6210.000177
ORF1ab/nsp31230S1230FtCttTt22B.1.80.003945
ORF1ab/nsp31230S1230FtCttTt22Q.80.00033
ORF1ab/nsp31230S1230FtCttTt110.055556
ORF1ab/nsp31230S1230FtCttTt11AY.1210.000135
ORF1ab/nsp31230S1230FtCttTt11AY.140.000088
ORF1ab/nsp31230S1230FtCttTt11AY.290.000016
ORF1ab/nsp31230S1230FtCttTt11AY.370.000316
ORF1ab/nsp31230S1230FtCttTt11AY.380.000499
ORF1ab/nsp31230S1230FtCttTt11AY.5.40.000277
ORF1ab/nsp31230S1230FtCttTt11AY.520.000814
ORF1ab/nsp31230S1230FtCttTt11AY.550.000917
ORF1ab/nsp31230S1230FtCttTt11AY.560.001605
ORF1ab/nsp31230S1230FtCttTt11AY.580.000907
ORF1ab/nsp31230S1230FtCttTt11AY.620.000436
ORF1ab/nsp31230S1230FtCttTt11AY.7.10.000113
ORF1ab/nsp31230S1230FtCttTt11AY.930.000273
ORF1ab/nsp31230S1230FtCttTt11AY.980.000079
ORF1ab/nsp31230S1230FtCttTt11AY.98.10.000048
ORF1ab/nsp31230S1230FtCttTt11B0.000128
ORF1ab/nsp31230S1230FtCttTt11B.1.1.280.000311
ORF1ab/nsp31230S1230FtCttTt11B.1.1.330.000421
ORF1ab/nsp31230S1230FtCttTt11B.1.1.340.013158
ORF1ab/nsp31230S1230FtCttTt11B.1.1.3480.000796
ORF1ab/nsp31230S1230FtCttTt11B.1.1.4160.000905
ORF1ab/nsp31230S1230FtCttTt11B.1.1.460.004367
ORF1ab/nsp31230S1230FtCttTt11B.1.1600.000031
ORF1ab/nsp31230S1230FtCttTt11B.1.1640.014925
ORF1ab/nsp31230S1230FtCttTt11B.1.177.860.000183
ORF1ab/nsp31230S1230FtCttTt11B.1.2140.003663
ORF1ab/nsp31230S1230FtCttTt11B.1.258.170.000104
ORF1ab/nsp31230S1230FtCttTt11B.1.351.30.000876
ORF1ab/nsp31230S1230FtCttTt11B.1.3610.001289
ORF1ab/nsp31230S1230FtCttTt11B.1.3750.00082
ORF1ab/nsp31230S1230FtCttTt11B.1.4590.004082
ORF1ab/nsp31230S1230FtCttTt11B.1.5250.000113
ORF1ab/nsp31230S1230FtCttTt11B.1.5740.002151
ORF1ab/nsp31230S1230FtCttTt11B.1.5950.000261
ORF1ab/nsp31230S1230FtCttTt11B.1.5990.00365
ORF1ab/nsp31230S1230FtCttTt11B.1.617.10.000129
ORF1ab/nsp31230S1230FtCttTt11B.610.005747
ORF1ab/nsp31230S1230FtCttTt11C.370.000116
ORF1ab/nsp31230S1230FtCttTt11D.20.000075
ORF1ab/nsp31230S1230FtCttTt11P.1.10.000318
ORF1ab/nsp31230S1230FtCttTt11P.1.60.001946
ORF1ab/nsp31230S1230FtCttTt11R.10.00009
ORF1ab/nsp31230S1230FtCttTt11W.10.008696