CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = S1212L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31212S1212LS2030LnonsyntCatTa475447530.999796353-6355
ORF1ab/nsp31212S1212LS2030LnonsynTCaCTa475410.0002103496353-6355

Details of the mutation S1212L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31212S1212LtCatTa47534754All0.000909
ORF1ab/nsp31212S1212LTCaCTa14754All0
ORF1ab/nsp31212S1212LtCatTa710710B.1.1.70.000636
ORF1ab/nsp31212S1212LtCatTa567567AY.46.40.093272
ORF1ab/nsp31212S1212LtCatTa501501AY.40.00078
ORF1ab/nsp31212S1212LtCatTa378378AY.440.002301
ORF1ab/nsp31212S1212LtCatTa258258B.1.5270.955556
ORF1ab/nsp31212S1212LtCatTa247247B.1.3510.007342
ORF1ab/nsp31212S1212LtCatTa235235AY.250.001413
ORF1ab/nsp31212S1212LtCatTa207207B.1.617.20.000779
ORF1ab/nsp31212S1212LtCatTa189189AY.430.000837
ORF1ab/nsp31212S1212LtCatTa114114AY.1030.000708
ORF1ab/nsp31212S1212LtCatTa9191AY.30.000905
ORF1ab/nsp31212S1212LtCatTa6060B.1.20.000528
ORF1ab/nsp31212S1212LtCatTa5959P.10.000929
ORF1ab/nsp31212S1212LtCatTa5252B.1.10.000943
ORF1ab/nsp31212S1212LtCatTa5252B.1.1600.001622
ORF1ab/nsp31212S1212LtCatTa4848B.10.00044
ORF1ab/nsp31212S1212LtCatTa4747B.1.5260.001105
ORF1ab/nsp31212S1212LtCatTa4646AY.240.019828
ORF1ab/nsp31212S1212LtCatTa4646B.1.6210.004072
ORF1ab/nsp31212S1212LtCatTa2929B.1.1770.000382
ORF1ab/nsp31212S1212LtCatTa2929B.1.258.170.003015
ORF1ab/nsp31212S1212LtCatTa2525B.1.2580.001664
ORF1ab/nsp31212S1212LtCatTa2424AY.98.10.001162
ORF1ab/nsp31212S1212LtCatTa1717AY.60.000699
ORF1ab/nsp31212S1212LtCatTa1717B.1.4270.000858
ORF1ab/nsp31212S1212LtCatTa1616AY.830.027586
ORF1ab/nsp31212S1212LtCatTa1515AY.390.000371
ORF1ab/nsp31212S1212LtCatTa1515B.1.1.3300.9375
ORF1ab/nsp31212S1212LtCatTa1515P.1.150.003485
ORF1ab/nsp31212S1212LtCatTa1414AY.340.001358
ORF1ab/nsp31212S1212LtCatTa1414B.1.4290.000329
ORF1ab/nsp31212S1212LtCatTa1313AY.200.000505
ORF1ab/nsp31212S1212LtCatTa1313AY.39.10.000515
ORF1ab/nsp31212S1212LtCatTa1212AY.1180.000752
ORF1ab/nsp31212S1212LtCatTa1212AY.1200.000446
ORF1ab/nsp31212S1212LtCatTa1212AY.460.001249
ORF1ab/nsp31212S1212LtCatTa1212AY.540.001144
ORF1ab/nsp31212S1212LtCatTa1212AY.590.006356
ORF1ab/nsp31212S1212LtCatTa1111AY.230.000767
ORF1ab/nsp31212S1212LtCatTa1111AY.290.000174
ORF1ab/nsp31212S1212LtCatTa1111AY.50.000227
ORF1ab/nsp31212S1212LtCatTa1111B.1.1.2740.055556
ORF1ab/nsp31212S1212LtCatTa1111B.1.2210.000781
ORF1ab/nsp31212S1212LtCatTa1111B.1.2430.000765
ORF1ab/nsp31212S1212LtCatTa1111B.1.5750.003337
ORF1ab/nsp31212S1212LtCatTa1010AY.210.018975
ORF1ab/nsp31212S1212LtCatTa1010B.1.1.5190.000397
ORF1ab/nsp31212S1212LtCatTa1010B.1.617.10.00129
ORF1ab/nsp31212S1212LtCatTa99AY.360.001334
ORF1ab/nsp31212S1212LtCatTa99AY.80.005455
ORF1ab/nsp31212S1212LtCatTa88AY.330.000534
ORF1ab/nsp31212S1212LtCatTa88AY.470.000249
ORF1ab/nsp31212S1212LtCatTa88B.1.360.001167
ORF1ab/nsp31212S1212LtCatTa77AY.1020.000186
ORF1ab/nsp31212S1212LtCatTa77AY.140.000616
ORF1ab/nsp31212S1212LtCatTa77AY.4.20.000152
ORF1ab/nsp31212S1212LtCatTa77AY.610.000733
ORF1ab/nsp31212S1212LtCatTa77AY.980.000553
ORF1ab/nsp31212S1212LtCatTa77B.1.1.280.002179
ORF1ab/nsp31212S1212LtCatTa77B.1.1.3180.002112
ORF1ab/nsp31212S1212LtCatTa77B.1.160.220.047297
ORF1ab/nsp31212S1212LtCatTa77C.370.000812
ORF1ab/nsp31212S1212LtCatTa66AY.1190.000212
ORF1ab/nsp31212S1212LtCatTa66AY.46.60.000433
ORF1ab/nsp31212S1212LtCatTa66AY.750.000336
ORF1ab/nsp31212S1212LtCatTa66B.1.160.160.005576
ORF1ab/nsp31212S1212LtCatTa66B.1.177.810.001136
ORF1ab/nsp31212S1212LtCatTa66B.1.2360.01232
ORF1ab/nsp31212S1212LtCatTa66B.1.2980.012685
ORF1ab/nsp31212S1212LtCatTa66B.1.5670.02
ORF1ab/nsp31212S1212LtCatTa66P.1.140.000287
ORF1ab/nsp31212S1212LtCatTa55AY.1000.00023
ORF1ab/nsp31212S1212LtCatTa55AY.1170.000423
ORF1ab/nsp31212S1212LtCatTa55AY.500.003997
ORF1ab/nsp31212S1212LtCatTa55AY.730.003327
ORF1ab/nsp31212S1212LtCatTa55AY.99.20.000461
ORF1ab/nsp31212S1212LtCatTa55B.1.1.390.002548
ORF1ab/nsp31212S1212LtCatTa55B.1.4970.001574
ORF1ab/nsp31212S1212LtCatTa55B.1.5960.000436
ORF1ab/nsp31212S1212LtCatTa55D.20.000375
ORF1ab/nsp31212S1212LtCatTa55P.1.60.009728
ORF1ab/nsp31212S1212LtCatTa44A.2.50.001996
ORF1ab/nsp31212S1212LtCatTa44A.280.010582
ORF1ab/nsp31212S1212LtCatTa44AY.1130.00057
ORF1ab/nsp31212S1212LtCatTa44AY.690.000747
ORF1ab/nsp31212S1212LtCatTa44AY.9.10.000335
ORF1ab/nsp31212S1212LtCatTa44AY.9.20.000147
ORF1ab/nsp31212S1212LtCatTa44B0.000511
ORF1ab/nsp31212S1212LtCatTa44B.1.1.1530.004381
ORF1ab/nsp31212S1212LtCatTa44B.1.1.4170.010811
ORF1ab/nsp31212S1212LtCatTa44B.1.177.280.02963
ORF1ab/nsp31212S1212LtCatTa44B.1.2340.000528
ORF1ab/nsp31212S1212LtCatTa44B.1.3670.00317
ORF1ab/nsp31212S1212LtCatTa44B.1.621.10.002023
ORF1ab/nsp31212S1212LtCatTa33AY.23.10.001252
ORF1ab/nsp31212S1212LtCatTa33AY.270.000194
ORF1ab/nsp31212S1212LtCatTa33AY.3.10.000256
ORF1ab/nsp31212S1212LtCatTa33AY.410.000882
ORF1ab/nsp31212S1212LtCatTa33AY.420.000121
ORF1ab/nsp31212S1212LtCatTa33AY.480.001395
ORF1ab/nsp31212S1212LtCatTa33AY.5.40.00083
ORF1ab/nsp31212S1212LtCatTa33AY.930.000819
ORF1ab/nsp31212S1212LtCatTa33B.1.1.2140.000166
ORF1ab/nsp31212S1212LtCatTa33B.1.1.3590.083333
ORF1ab/nsp31212S1212LtCatTa33B.1.177.300.007538
ORF1ab/nsp31212S1212LtCatTa33B.1.177.570.000843
ORF1ab/nsp31212S1212LtCatTa33B.1.3610.003866
ORF1ab/nsp31212S1212LtCatTa33B.1.5810.028302
ORF1ab/nsp31212S1212LtCatTa33R.10.00027
ORF1ab/nsp31212S1212LtCatTa22A.30.004193
ORF1ab/nsp31212S1212LtCatTa22AY.260.000057
ORF1ab/nsp31212S1212LtCatTa22AY.29.10.000441
ORF1ab/nsp31212S1212LtCatTa22AY.350.000466
ORF1ab/nsp31212S1212LtCatTa22AY.4.50.000215
ORF1ab/nsp31212S1212LtCatTa22AY.450.000243
ORF1ab/nsp31212S1212LtCatTa22AY.910.001461
ORF1ab/nsp31212S1212LtCatTa22AY.950.001522
ORF1ab/nsp31212S1212LtCatTa22B.1.1.1760.000879
ORF1ab/nsp31212S1212LtCatTa22B.1.1.270.011299
ORF1ab/nsp31212S1212LtCatTa22B.1.1.2980.001724
ORF1ab/nsp31212S1212LtCatTa22B.1.1.3770.002762
ORF1ab/nsp31212S1212LtCatTa22B.1.1.500.001358
ORF1ab/nsp31212S1212LtCatTa22B.1.177.210.000153
ORF1ab/nsp31212S1212LtCatTa22B.1.177.60.001953
ORF1ab/nsp31212S1212LtCatTa22B.1.177.600.000437
ORF1ab/nsp31212S1212LtCatTa22B.1.214.20.001199
ORF1ab/nsp31212S1212LtCatTa22B.1.36.80.002
ORF1ab/nsp31212S1212LtCatTa22B.1.5170.000854
ORF1ab/nsp31212S1212LtCatTa22B.1.6090.000959
ORF1ab/nsp31212S1212LtCatTa22B.1.619.10.001283
ORF1ab/nsp31212S1212LtCatTa22B.1.6280.000705
ORF1ab/nsp31212S1212LtCatTa22C.160.002121
ORF1ab/nsp31212S1212LtCatTa22P.1.170.000324
ORF1ab/nsp31212S1212LtCatTa22P.1.70.000639
ORF1ab/nsp31212S1212LtCatTa22Q.10.000253
ORF1ab/nsp31212S1212LtCatTa11A.23.10.000704
ORF1ab/nsp31212S1212LtCatTa11A.270.001656
ORF1ab/nsp31212S1212LtCatTa11AD.20.000219
ORF1ab/nsp31212S1212LtCatTa11AE.80.000489
ORF1ab/nsp31212S1212LtCatTa11AY.1010.00049
ORF1ab/nsp31212S1212LtCatTa11AY.1110.000183
ORF1ab/nsp31212S1212LtCatTa11AY.1140.000231
ORF1ab/nsp31212S1212LtCatTa11AY.1210.000135
ORF1ab/nsp31212S1212LtCatTa11AY.34.10.00051
ORF1ab/nsp31212S1212LtCatTa11AY.46.20.000635
ORF1ab/nsp31212S1212LtCatTa11AY.530.000288
ORF1ab/nsp31212S1212LtCatTa11AY.640.000595
ORF1ab/nsp31212S1212LtCatTa11AY.70.000196
ORF1ab/nsp31212S1212LtCatTa11AY.700.000209
ORF1ab/nsp31212S1212LtCatTa11AY.710.000475
ORF1ab/nsp31212S1212LtCatTa11AY.75.10.00018
ORF1ab/nsp31212S1212LtCatTa11AY.870.000833
ORF1ab/nsp31212S1212LtCatTa11AY.880.000884
ORF1ab/nsp31212S1212LtCatTa11AY.90.000068
ORF1ab/nsp31212S1212LtCatTa11AZ.10.000867
ORF1ab/nsp31212S1212LtCatTa11AZ.30.00152
ORF1ab/nsp31212S1212LtCatTa11B.1.1.1700.001247
ORF1ab/nsp31212S1212LtCatTa11B.1.1.1980.001468
ORF1ab/nsp31212S1212LtCatTa11B.1.1.2160.00089
ORF1ab/nsp31212S1212LtCatTa11B.1.1.2220.000204
ORF1ab/nsp31212S1212LtCatTa11B.1.1.2260.005814
ORF1ab/nsp31212S1212LtCatTa11B.1.1.300.076923
ORF1ab/nsp31212S1212LtCatTa11B.1.1.3100.015152
ORF1ab/nsp31212S1212LtCatTa11B.1.1.3160.000925
ORF1ab/nsp31212S1212LtCatTa11B.1.1.3560.008547
ORF1ab/nsp31212S1212LtCatTa11B.1.1.3760.005952
ORF1ab/nsp31212S1212LtCatTa11B.1.1.4090.002833
ORF1ab/nsp31212S1212LtCatTa11B.1.1.4160.000905
ORF1ab/nsp31212S1212LtCatTa11B.1.1.460.004367
ORF1ab/nsp31212S1212LtCatTa11B.1.1110.001175
ORF1ab/nsp31212S1212LtCatTa11B.1.1260.001276
ORF1ab/nsp31212S1212LtCatTa11B.1.130.002375
ORF1ab/nsp31212S1212LtCatTa11B.1.160.140.002119
ORF1ab/nsp31212S1212LtCatTa11B.1.177.120.000152
ORF1ab/nsp31212S1212LtCatTa11B.1.177.160.000664
ORF1ab/nsp31212S1212LtCatTa11B.1.177.440.000519
ORF1ab/nsp31212S1212LtCatTa11B.1.177.510.004566
ORF1ab/nsp31212S1212LtCatTa11B.1.177.770.000726
ORF1ab/nsp31212S1212LtCatTa11B.1.177.80.000752
ORF1ab/nsp31212S1212LtCatTa11B.1.2230.002778
ORF1ab/nsp31212S1212LtCatTa11B.1.350.008475
ORF1ab/nsp31212S1212LtCatTa11B.1.3560.001727
ORF1ab/nsp31212S1212LtCatTa11B.1.36.290.000517
ORF1ab/nsp31212S1212LtCatTa11B.1.36.370.002778
ORF1ab/nsp31212S1212LtCatTa11B.1.3750.00082
ORF1ab/nsp31212S1212LtCatTa11B.1.4060.006061
ORF1ab/nsp31212S1212LtCatTa11B.1.438.20.019231
ORF1ab/nsp31212S1212LtCatTa11B.1.466.20.000391
ORF1ab/nsp31212S1212LtCatTa11B.1.5240.001406
ORF1ab/nsp31212S1212LtCatTa11B.1.5250.000113
ORF1ab/nsp31212S1212LtCatTa11B.1.5610.000397
ORF1ab/nsp31212S1212LtCatTa11B.1.564.10.001577
ORF1ab/nsp31212S1212LtCatTa11B.1.5820.000491
ORF1ab/nsp31212S1212LtCatTa11B.1.5870.001898
ORF1ab/nsp31212S1212LtCatTa11B.1.6180.004032
ORF1ab/nsp31212S1212LtCatTa11B.350.007812
ORF1ab/nsp31212S1212LTCaCTa11C.350.000774
ORF1ab/nsp31212S1212LtCatTa11C.36.30.000567
ORF1ab/nsp31212S1212LtCatTa11P.1.120.000484
ORF1ab/nsp31212S1212LtCatTa11P.30.001595
ORF1ab/nsp31212S1212LtCatTa11U.30.003861