CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = S1206S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31206S1206SS2024SsyntcGtcA340518110.5318656335-6337
ORF1ab/nsp31206S1206SS2024SsyntcGtcT340515610.4584436335-6337
ORF1ab/nsp31206S1206SS2024SsyntcGtcC3405330.009691636335-6337

Details of the mutation S1206S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31206S1206StcGtcA18113405All0.000346
ORF1ab/nsp31206S1206StcGtcT15613405All0.000299
ORF1ab/nsp31206S1206StcGtcC333405All0.000006
ORF1ab/nsp31206S1206StcGtcT6011075B.1.1.70.000538
ORF1ab/nsp31206S1206StcGtcA4701075B.1.1.70.000421
ORF1ab/nsp31206S1206StcGtcC41075B.1.1.70.000004
ORF1ab/nsp31206S1206StcGtcA305311AY.9.20.011203
ORF1ab/nsp31206S1206StcGtcT6311AY.9.20.00022
ORF1ab/nsp31206S1206StcGtcA168276AY.40.000261
ORF1ab/nsp31206S1206StcGtcT99276AY.40.000154
ORF1ab/nsp31206S1206StcGtcC9276AY.40.000014
ORF1ab/nsp31206S1206StcGtcA84147B.1.617.20.000316
ORF1ab/nsp31206S1206StcGtcT61147B.1.617.20.00023
ORF1ab/nsp31206S1206StcGtcC2147B.1.617.20.000008
ORF1ab/nsp31206S1206StcGtcA6695AY.1030.00041
ORF1ab/nsp31206S1206StcGtcT2995AY.1030.00018
ORF1ab/nsp31206S1206StcGtcT6091AY.30.000597
ORF1ab/nsp31206S1206StcGtcA2791AY.30.000269
ORF1ab/nsp31206S1206StcGtcC491AY.30.00004
ORF1ab/nsp31206S1206StcGtcA7689P.1.140.003633
ORF1ab/nsp31206S1206StcGtcT1389P.1.140.000621
ORF1ab/nsp31206S1206StcGtcT5469B.1.20.000475
ORF1ab/nsp31206S1206StcGtcA1569B.1.20.000132
ORF1ab/nsp31206S1206StcGtcA4268AY.430.000186
ORF1ab/nsp31206S1206StcGtcT2668AY.430.000115
ORF1ab/nsp31206S1206StcGtcA6161AY.940.027003
ORF1ab/nsp31206S1206StcGtcT5357B.1.10.000961
ORF1ab/nsp31206S1206StcGtcA357B.1.10.000054
ORF1ab/nsp31206S1206StcGtcC157B.1.10.000018
ORF1ab/nsp31206S1206StcGtcA5353C.370.006151
ORF1ab/nsp31206S1206StcGtcT2544AY.250.00015
ORF1ab/nsp31206S1206StcGtcA1944AY.250.000114
ORF1ab/nsp31206S1206StcGtcA3742B.1.1.280.011516
ORF1ab/nsp31206S1206StcGtcT542B.1.1.280.001556
ORF1ab/nsp31206S1206StcGtcA3838B.1.5050.166667
ORF1ab/nsp31206S1206StcGtcT3838B.280.12459
ORF1ab/nsp31206S1206StcGtcT3737B.1.258.170.003847
ORF1ab/nsp31206S1206StcGtcT2236AY.1020.000583
ORF1ab/nsp31206S1206StcGtcA1436AY.1020.000371
ORF1ab/nsp31206S1206StcGtcT1936B.10.000174
ORF1ab/nsp31206S1206StcGtcA1636B.10.000147
ORF1ab/nsp31206S1206StcGtcC136B.10.000009
ORF1ab/nsp31206S1206StcGtcA2036P.10.000315
ORF1ab/nsp31206S1206StcGtcT1636P.10.000252
ORF1ab/nsp31206S1206StcGtcA3133AY.260.000878
ORF1ab/nsp31206S1206StcGtcT233AY.260.000057
ORF1ab/nsp31206S1206StcGtcA1933AY.440.000116
ORF1ab/nsp31206S1206StcGtcT1433AY.440.000085
ORF1ab/nsp31206S1206StcGtcT3333B.1.1.2160.029386
ORF1ab/nsp31206S1206StcGtcA1826AY.1190.000636
ORF1ab/nsp31206S1206StcGtcC626AY.1190.000212
ORF1ab/nsp31206S1206StcGtcT226AY.1190.000071
ORF1ab/nsp31206S1206StcGtcT2424AY.380.011982
ORF1ab/nsp31206S1206StcGtcA2424AY.580.021779
ORF1ab/nsp31206S1206StcGtcT1722AY.390.00042
ORF1ab/nsp31206S1206StcGtcA522AY.390.000124
ORF1ab/nsp31206S1206StcGtcT2222B.1.6210.001947
ORF1ab/nsp31206S1206StcGtcA1819AY.1060.006028
ORF1ab/nsp31206S1206StcGtcT119AY.1060.000335
ORF1ab/nsp31206S1206StcGtcA1818B.1.1.4340.006274
ORF1ab/nsp31206S1206StcGtcT1818B.1.3670.014263
ORF1ab/nsp31206S1206StcGtcT915B.1.3510.000268
ORF1ab/nsp31206S1206StcGtcA615B.1.3510.000178
ORF1ab/nsp31206S1206StcGtcT1111AY.610.001153
ORF1ab/nsp31206S1206StcGtcT810B.1.1770.000105
ORF1ab/nsp31206S1206StcGtcA110B.1.1770.000013
ORF1ab/nsp31206S1206StcGtcC110B.1.1770.000013
ORF1ab/nsp31206S1206StcGtcA610B.1.4290.000141
ORF1ab/nsp31206S1206StcGtcT410B.1.4290.000094
ORF1ab/nsp31206S1206StcGtcT910B.1.5260.000212
ORF1ab/nsp31206S1206StcGtcA110B.1.5260.000024
ORF1ab/nsp31206S1206StcGtcT99AM.21
ORF1ab/nsp31206S1206StcGtcA99B.1.1.5250.04918
ORF1ab/nsp31206S1206StcGtcT69B.1.4000.002574
ORF1ab/nsp31206S1206StcGtcA39B.1.4000.001287
ORF1ab/nsp31206S1206StcGtcT99B.1.5090.007792
ORF1ab/nsp31206S1206StcGtcT68AY.4.20.00013
ORF1ab/nsp31206S1206StcGtcA28AY.4.20.000043
ORF1ab/nsp31206S1206StcGtcT88B.1.1.3280.135593
ORF1ab/nsp31206S1206StcGtcA67AY.1200.000223
ORF1ab/nsp31206S1206StcGtcT17AY.1200.000037
ORF1ab/nsp31206S1206StcGtcA67B.1.1600.000187
ORF1ab/nsp31206S1206StcGtcT17B.1.1600.000031
ORF1ab/nsp31206S1206StcGtcA47B.1.4700.005618
ORF1ab/nsp31206S1206StcGtcT37B.1.4700.004213
ORF1ab/nsp31206S1206StcGtcA67B.1.5960.000523
ORF1ab/nsp31206S1206StcGtcT17B.1.5960.000087
ORF1ab/nsp31206S1206StcGtcT66A0.002322
ORF1ab/nsp31206S1206StcGtcT66AY.10.002374
ORF1ab/nsp31206S1206StcGtcA36AY.200.000117
ORF1ab/nsp31206S1206StcGtcT36AY.200.000117
ORF1ab/nsp31206S1206StcGtcT46AY.290.000063
ORF1ab/nsp31206S1206StcGtcA26AY.290.000032
ORF1ab/nsp31206S1206StcGtcA46AY.460.000416
ORF1ab/nsp31206S1206StcGtcT26AY.460.000208
ORF1ab/nsp31206S1206StcGtcA46AY.50.000083
ORF1ab/nsp31206S1206StcGtcT26AY.50.000041
ORF1ab/nsp31206S1206StcGtcT46AY.99.20.000369
ORF1ab/nsp31206S1206StcGtcA26AY.99.20.000184
ORF1ab/nsp31206S1206StcGtcT66B.1.1.1890.009077
ORF1ab/nsp31206S1206StcGtcT56B.1.1.2140.000277
ORF1ab/nsp31206S1206StcGtcA16B.1.1.2140.000055
ORF1ab/nsp31206S1206StcGtcT46B.1.2430.000278
ORF1ab/nsp31206S1206StcGtcA26B.1.2430.000139
ORF1ab/nsp31206S1206StcGtcT66P.70.026201
ORF1ab/nsp31206S1206StcGtcT45AY.1180.000251
ORF1ab/nsp31206S1206StcGtcA15AY.1180.000063
ORF1ab/nsp31206S1206StcGtcT45B0.000511
ORF1ab/nsp31206S1206StcGtcA15B0.000128
ORF1ab/nsp31206S1206StcGtcA55B.1.1.5190.000199
ORF1ab/nsp31206S1206StcGtcT45B.1.438.10.000429
ORF1ab/nsp31206S1206StcGtcA15B.1.438.10.000107
ORF1ab/nsp31206S1206StcGtcA55B.1.5560.037594
ORF1ab/nsp31206S1206StcGtcT35B.1.617.10.000387
ORF1ab/nsp31206S1206StcGtcA25B.1.617.10.000258
ORF1ab/nsp31206S1206StcGtcT34AY.420.000121
ORF1ab/nsp31206S1206StcGtcA14AY.420.00004
ORF1ab/nsp31206S1206StcGtcT44AY.520.003257
ORF1ab/nsp31206S1206StcGtcT44AY.750.000224
ORF1ab/nsp31206S1206StcGtcA44AY.880.003537
ORF1ab/nsp31206S1206StcGtcT44B.1.1.3480.003185
ORF1ab/nsp31206S1206StcGtcT24B.1.360.000292
ORF1ab/nsp31206S1206StcGtcA24B.1.360.000292
ORF1ab/nsp31206S1206StcGtcA34B.1.6280.001057
ORF1ab/nsp31206S1206StcGtcT14B.1.6280.000352
ORF1ab/nsp31206S1206StcGtcT44Q.80.00066
ORF1ab/nsp31206S1206StcGtcT34R.10.00027
ORF1ab/nsp31206S1206StcGtcA14R.10.00009
ORF1ab/nsp31206S1206StcGtcT23AY.1210.000271
ORF1ab/nsp31206S1206StcGtcA13AY.1210.000135
ORF1ab/nsp31206S1206StcGtcA33AY.130.000483
ORF1ab/nsp31206S1206StcGtcT33AY.360.000445
ORF1ab/nsp31206S1206StcGtcT33AY.75.10.000541
ORF1ab/nsp31206S1206StcGtcA23AY.90.000135
ORF1ab/nsp31206S1206StcGtcT13AY.90.000068
ORF1ab/nsp31206S1206StcGtcT23AY.910.001461
ORF1ab/nsp31206S1206StcGtcA13AY.910.00073
ORF1ab/nsp31206S1206StcGtcT23AY.98.10.000097
ORF1ab/nsp31206S1206StcGtcA13AY.98.10.000048
ORF1ab/nsp31206S1206StcGtcT33B.1.1.3220.026316
ORF1ab/nsp31206S1206StcGtcT33B.1.1.4160.002715
ORF1ab/nsp31206S1206StcGtcT33B.1.177.750.003122
ORF1ab/nsp31206S1206StcGtcT33B.1.2390.003663
ORF1ab/nsp31206S1206StcGtcA33B.1.2600.010033
ORF1ab/nsp31206S1206StcGtcA33Q.30.000435
ORF1ab/nsp31206S1206StcGtcT22A.23.10.001408
ORF1ab/nsp31206S1206StcGtcT22AM.40.007143
ORF1ab/nsp31206S1206StcGtcT12AY.230.00007
ORF1ab/nsp31206S1206StcGtcA12AY.230.00007
ORF1ab/nsp31206S1206StcGtcA12AY.3.10.000085
ORF1ab/nsp31206S1206StcGtcT12AY.3.10.000085
ORF1ab/nsp31206S1206StcGtcT22AY.320.001065
ORF1ab/nsp31206S1206StcGtcA22AY.350.000466
ORF1ab/nsp31206S1206StcGtcA22AY.370.000632
ORF1ab/nsp31206S1206StcGtcT12AY.39.10.00004
ORF1ab/nsp31206S1206StcGtcA12AY.39.10.00004
ORF1ab/nsp31206S1206StcGtcA22AY.450.000243
ORF1ab/nsp31206S1206StcGtcT12AY.5.40.000277
ORF1ab/nsp31206S1206StcGtcA12AY.5.40.000277
ORF1ab/nsp31206S1206StcGtcT22AY.70.000392
ORF1ab/nsp31206S1206StcGtcT22AY.7.10.000225
ORF1ab/nsp31206S1206StcGtcT22AY.710.00095
ORF1ab/nsp31206S1206StcGtcT22AY.740.000231
ORF1ab/nsp31206S1206StcGtcA22AY.9.10.000167
ORF1ab/nsp31206S1206StcGtcA22B.1.1.2220.000408
ORF1ab/nsp31206S1206StcGtcT22B.1.1.2440.030769
ORF1ab/nsp31206S1206StcGtcA22B.1.1.330.000842
ORF1ab/nsp31206S1206StcGtcT22B.1.1.40.005952
ORF1ab/nsp31206S1206StcGtcA22B.1.4250.005988
ORF1ab/nsp31206S1206StcGtcA22B.1.5610.000794
ORF1ab/nsp31206S1206StcGtcT22B.290.007018
ORF1ab/nsp31206S1206StcGtcT22C.10.004785
ORF1ab/nsp31206S1206StcGtcA22C.37.10.005236
ORF1ab/nsp31206S1206StcGtcT12P.1.70.000319
ORF1ab/nsp31206S1206StcGtcA12P.1.70.000319
ORF1ab/nsp31206S1206StcGtcA11AA.10.007246
ORF1ab/nsp31206S1206StcGtcA11AE.50.018519
ORF1ab/nsp31206S1206StcGtcA11AE.80.000489
ORF1ab/nsp31206S1206StcGtcA11AU.30.00211
ORF1ab/nsp31206S1206StcGtcT11AY.1000.000046
ORF1ab/nsp31206S1206StcGtcT11AY.110.001339
ORF1ab/nsp31206S1206StcGtcA11AY.1130.000142
ORF1ab/nsp31206S1206StcGtcT11AY.116.10.000311
ORF1ab/nsp31206S1206StcGtcT11AY.1170.000085
ORF1ab/nsp31206S1206StcGtcT11AY.16.10.00047
ORF1ab/nsp31206S1206StcGtcA11AY.240.000431
ORF1ab/nsp31206S1206StcGtcA11AY.330.000067
ORF1ab/nsp31206S1206StcGtcA11AY.4.2.10.000149
ORF1ab/nsp31206S1206StcGtcT11AY.400.000964
ORF1ab/nsp31206S1206StcGtcA11AY.46.30.000934
ORF1ab/nsp31206S1206StcGtcT11AY.46.60.000072
ORF1ab/nsp31206S1206StcGtcC11AY.510.000909
ORF1ab/nsp31206S1206StcGtcT11AY.60.000041
ORF1ab/nsp31206S1206StcGtcT11AY.600.000938
ORF1ab/nsp31206S1206StcGtcT11AY.620.000436
ORF1ab/nsp31206S1206StcGtcA11AY.680.000274
ORF1ab/nsp31206S1206StcGtcT11AY.720.001361
ORF1ab/nsp31206S1206StcGtcA11AY.770.001127
ORF1ab/nsp31206S1206StcGtcA11B.1.1.100.001115
ORF1ab/nsp31206S1206StcGtcT11B.1.1.1010.01
ORF1ab/nsp31206S1206StcGtcT11B.1.1.1530.001095
ORF1ab/nsp31206S1206StcGtcA11B.1.1.1590.004673
ORF1ab/nsp31206S1206StcGtcA11B.1.1.1760.000439
ORF1ab/nsp31206S1206StcGtcT11B.1.1.2080.012195
ORF1ab/nsp31206S1206StcGtcT11B.1.1.250.000569
ORF1ab/nsp31206S1206StcGtcC11B.1.1.2770.000759
ORF1ab/nsp31206S1206StcGtcT11B.1.1.2980.000862
ORF1ab/nsp31206S1206StcGtcC11B.1.1.3050.003861
ORF1ab/nsp31206S1206StcGtcA11B.1.1.3170.000412
ORF1ab/nsp31206S1206StcGtcA11B.1.1.3180.000302
ORF1ab/nsp31206S1206StcGtcT11B.1.1.470.005348
ORF1ab/nsp31206S1206StcGtcT11B.1.1.80.003584
ORF1ab/nsp31206S1206StcGtcT11B.1.1.890.006061
ORF1ab/nsp31206S1206StcGtcA11B.1.1.980.018519
ORF1ab/nsp31206S1206StcGtcT11B.1.1570.002985
ORF1ab/nsp31206S1206StcGtcA11B.1.160.190.035714
ORF1ab/nsp31206S1206StcGtcA11B.1.177.210.000076
ORF1ab/nsp31206S1206StcGtcA11B.1.177.540.000606
ORF1ab/nsp31206S1206StcGtcC11B.1.177.560.000668
ORF1ab/nsp31206S1206StcGtcT11B.1.177.630.002703
ORF1ab/nsp31206S1206StcGtcT11B.1.177.730.000566
ORF1ab/nsp31206S1206StcGtcT11B.1.177.810.000189
ORF1ab/nsp31206S1206StcGtcT11B.1.177.830.001481
ORF1ab/nsp31206S1206StcGtcA11B.1.1900.01
ORF1ab/nsp31206S1206StcGtcA11B.1.2340.000132
ORF1ab/nsp31206S1206StcGtcA11B.1.2500.014493
ORF1ab/nsp31206S1206StcGtcA11B.1.2580.000067
ORF1ab/nsp31206S1206StcGtcT11B.1.3320.003497
ORF1ab/nsp31206S1206StcGtcT11B.1.3360.002439
ORF1ab/nsp31206S1206StcGtcA11B.1.351.50.0006
ORF1ab/nsp31206S1206StcGtcT11B.1.3560.001727
ORF1ab/nsp31206S1206StcGtcT11B.1.36.170.000494
ORF1ab/nsp31206S1206StcGtcT11B.1.36.290.000517
ORF1ab/nsp31206S1206StcGtcA11B.1.3690.000285
ORF1ab/nsp31206S1206StcGtcA11B.1.3890.001002
ORF1ab/nsp31206S1206StcGtcT11B.1.3960.000706
ORF1ab/nsp31206S1206StcGtcT11B.1.4270.00005
ORF1ab/nsp31206S1206StcGtcA11B.1.4510.008197
ORF1ab/nsp31206S1206StcGtcA11B.1.4590.004082
ORF1ab/nsp31206S1206StcGtcT11B.1.5600.00463
ORF1ab/nsp31206S1206StcGtcT11B.1.5770.000687
ORF1ab/nsp31206S1206StcGtcA11B.1.6290.013333
ORF1ab/nsp31206S1206StcGtcT11B.1.6310.003367
ORF1ab/nsp31206S1206StcGtcA11B.310.003731
ORF1ab/nsp31206S1206StcGtcA11C.160.00106
ORF1ab/nsp31206S1206StcGtcT11C.180.002591
ORF1ab/nsp31206S1206StcGtcC11C.20.016129
ORF1ab/nsp31206S1206StcGtcT11D.20.000075
ORF1ab/nsp31206S1206StcGtcT11P.1.150.000232
ORF1ab/nsp31206S1206StcGtcT11P.1.170.000162
ORF1ab/nsp31206S1206StcGtcA11P.1.90.004808
ORF1ab/nsp31206S1206StcGtcT11P.20.000187