CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1206 | S1206S | S2024S | syn | tcG | tcA | 3405 | 1811 | 0.531865 | 6335-6337 |
ORF1ab/nsp3 | 1206 | S1206S | S2024S | syn | tcG | tcT | 3405 | 1561 | 0.458443 | 6335-6337 |
ORF1ab/nsp3 | 1206 | S1206S | S2024S | syn | tcG | tcC | 3405 | 33 | 0.00969163 | 6335-6337 |
Details of the mutation S1206S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1811 | 3405 | All | 0.000346 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1561 | 3405 | All | 0.000299 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcC | 33 | 3405 | All | 0.000006 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 601 | 1075 | B.1.1.7 | 0.000538 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 470 | 1075 | B.1.1.7 | 0.000421 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcC | 4 | 1075 | B.1.1.7 | 0.000004 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 305 | 311 | AY.9.2 | 0.011203 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 6 | 311 | AY.9.2 | 0.00022 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 168 | 276 | AY.4 | 0.000261 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 99 | 276 | AY.4 | 0.000154 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcC | 9 | 276 | AY.4 | 0.000014 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 84 | 147 | B.1.617.2 | 0.000316 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 61 | 147 | B.1.617.2 | 0.00023 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcC | 2 | 147 | B.1.617.2 | 0.000008 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 66 | 95 | AY.103 | 0.00041 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 29 | 95 | AY.103 | 0.00018 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 60 | 91 | AY.3 | 0.000597 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 27 | 91 | AY.3 | 0.000269 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcC | 4 | 91 | AY.3 | 0.00004 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 76 | 89 | P.1.14 | 0.003633 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 13 | 89 | P.1.14 | 0.000621 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 54 | 69 | B.1.2 | 0.000475 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 15 | 69 | B.1.2 | 0.000132 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 42 | 68 | AY.43 | 0.000186 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 26 | 68 | AY.43 | 0.000115 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 61 | 61 | AY.94 | 0.027003 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 53 | 57 | B.1.1 | 0.000961 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 3 | 57 | B.1.1 | 0.000054 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcC | 1 | 57 | B.1.1 | 0.000018 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 53 | 53 | C.37 | 0.006151 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 25 | 44 | AY.25 | 0.00015 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 19 | 44 | AY.25 | 0.000114 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 37 | 42 | B.1.1.28 | 0.011516 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 5 | 42 | B.1.1.28 | 0.001556 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 38 | 38 | B.1.505 | 0.166667 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 38 | 38 | B.28 | 0.12459 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 37 | 37 | B.1.258.17 | 0.003847 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 22 | 36 | AY.102 | 0.000583 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 14 | 36 | AY.102 | 0.000371 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 19 | 36 | B.1 | 0.000174 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 16 | 36 | B.1 | 0.000147 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcC | 1 | 36 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 20 | 36 | P.1 | 0.000315 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 16 | 36 | P.1 | 0.000252 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 31 | 33 | AY.26 | 0.000878 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 2 | 33 | AY.26 | 0.000057 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 19 | 33 | AY.44 | 0.000116 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 14 | 33 | AY.44 | 0.000085 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 33 | 33 | B.1.1.216 | 0.029386 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 18 | 26 | AY.119 | 0.000636 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcC | 6 | 26 | AY.119 | 0.000212 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 2 | 26 | AY.119 | 0.000071 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 24 | 24 | AY.38 | 0.011982 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 24 | 24 | AY.58 | 0.021779 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 17 | 22 | AY.39 | 0.00042 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 5 | 22 | AY.39 | 0.000124 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 22 | 22 | B.1.621 | 0.001947 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 18 | 19 | AY.106 | 0.006028 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 19 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 18 | 18 | B.1.1.434 | 0.006274 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 18 | 18 | B.1.367 | 0.014263 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 9 | 15 | B.1.351 | 0.000268 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 6 | 15 | B.1.351 | 0.000178 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 11 | 11 | AY.61 | 0.001153 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 8 | 10 | B.1.177 | 0.000105 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 10 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcC | 1 | 10 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 6 | 10 | B.1.429 | 0.000141 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 4 | 10 | B.1.429 | 0.000094 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 9 | 10 | B.1.526 | 0.000212 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 10 | B.1.526 | 0.000024 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 9 | 9 | AM.2 | 1 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 9 | 9 | B.1.1.525 | 0.04918 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 6 | 9 | B.1.400 | 0.002574 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 3 | 9 | B.1.400 | 0.001287 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 9 | 9 | B.1.509 | 0.007792 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 6 | 8 | AY.4.2 | 0.00013 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 2 | 8 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 8 | 8 | B.1.1.328 | 0.135593 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 6 | 7 | AY.120 | 0.000223 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 7 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 6 | 7 | B.1.160 | 0.000187 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 7 | B.1.160 | 0.000031 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 4 | 7 | B.1.470 | 0.005618 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 3 | 7 | B.1.470 | 0.004213 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 6 | 7 | B.1.596 | 0.000523 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 7 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 6 | 6 | A | 0.002322 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 6 | 6 | AY.1 | 0.002374 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 3 | 6 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 3 | 6 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 4 | 6 | AY.29 | 0.000063 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 2 | 6 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 4 | 6 | AY.46 | 0.000416 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 2 | 6 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 4 | 6 | AY.5 | 0.000083 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 2 | 6 | AY.5 | 0.000041 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 4 | 6 | AY.99.2 | 0.000369 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 2 | 6 | AY.99.2 | 0.000184 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 6 | 6 | B.1.1.189 | 0.009077 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 5 | 6 | B.1.1.214 | 0.000277 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 6 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 4 | 6 | B.1.243 | 0.000278 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 2 | 6 | B.1.243 | 0.000139 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 6 | 6 | P.7 | 0.026201 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 4 | 5 | AY.118 | 0.000251 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 5 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 4 | 5 | B | 0.000511 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 5 | B | 0.000128 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 4 | 5 | B.1.438.1 | 0.000429 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 5 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 5 | 5 | B.1.556 | 0.037594 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 3 | 5 | B.1.617.1 | 0.000387 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 2 | 5 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 3 | 4 | AY.42 | 0.000121 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 4 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 4 | 4 | AY.52 | 0.003257 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 4 | 4 | AY.75 | 0.000224 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 4 | 4 | AY.88 | 0.003537 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 4 | 4 | B.1.1.348 | 0.003185 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 2 | 4 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 2 | 4 | B.1.36 | 0.000292 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 3 | 4 | B.1.628 | 0.001057 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 4 | B.1.628 | 0.000352 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 4 | 4 | Q.8 | 0.00066 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 3 | 4 | R.1 | 0.00027 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 4 | R.1 | 0.00009 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 2 | 3 | AY.121 | 0.000271 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 3 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 3 | 3 | AY.13 | 0.000483 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 3 | 3 | AY.36 | 0.000445 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 2 | 3 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 3 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 2 | 3 | AY.91 | 0.001461 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 3 | AY.91 | 0.00073 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 2 | 3 | AY.98.1 | 0.000097 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 3 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 3 | 3 | B.1.1.322 | 0.026316 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 3 | 3 | B.1.1.416 | 0.002715 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 3 | 3 | B.1.177.75 | 0.003122 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 3 | 3 | B.1.239 | 0.003663 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 3 | 3 | B.1.260 | 0.010033 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 3 | 3 | Q.3 | 0.000435 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 2 | 2 | A.23.1 | 0.001408 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 2 | 2 | AM.4 | 0.007143 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 2 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 2 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 2 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 2 | AY.3.1 | 0.000085 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 2 | 2 | AY.32 | 0.001065 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 2 | 2 | AY.35 | 0.000466 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 2 | 2 | AY.37 | 0.000632 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 2 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 2 | AY.39.1 | 0.00004 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 2 | 2 | AY.45 | 0.000243 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 2 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 2 | AY.5.4 | 0.000277 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 2 | 2 | AY.7 | 0.000392 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 2 | 2 | AY.7.1 | 0.000225 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 2 | 2 | B.1.1.222 | 0.000408 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 2 | 2 | B.1.1.244 | 0.030769 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 2 | 2 | B.1.1.33 | 0.000842 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 2 | 2 | B.1.1.4 | 0.005952 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 2 | 2 | B.1.425 | 0.005988 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 2 | 2 | B.1.561 | 0.000794 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 2 | 2 | B.29 | 0.007018 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 2 | 2 | C.1 | 0.004785 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 2 | 2 | C.37.1 | 0.005236 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 2 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 2 | P.1.7 | 0.000319 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 1 | AA.1 | 0.007246 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 1 | AE.5 | 0.018519 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 1 | AU.3 | 0.00211 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | AY.100 | 0.000046 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | AY.11 | 0.001339 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 1 | AY.113 | 0.000142 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | AY.116.1 | 0.000311 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 1 | AY.24 | 0.000431 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 1 | AY.33 | 0.000067 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 1 | AY.46.3 | 0.000934 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | AY.46.6 | 0.000072 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcC | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | AY.72 | 0.001361 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | B.1.1.101 | 0.01 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 1 | B.1.1.159 | 0.004673 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | B.1.1.208 | 0.012195 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcC | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | B.1.1.298 | 0.000862 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcC | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 1 | B.1.1.317 | 0.000412 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | B.1.1.47 | 0.005348 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | B.1.1.8 | 0.003584 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | B.1.1.89 | 0.006061 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 1 | B.1.1.98 | 0.018519 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | B.1.157 | 0.002985 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 1 | B.1.160.19 | 0.035714 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcC | 1 | 1 | B.1.177.56 | 0.000668 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | B.1.177.63 | 0.002703 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | B.1.177.73 | 0.000566 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | B.1.177.83 | 0.001481 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 1 | B.1.190 | 0.01 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 1 | B.1.250 | 0.014493 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | B.1.332 | 0.003497 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | B.1.336 | 0.002439 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 1 | B.1.451 | 0.008197 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 1 | B.1.459 | 0.004082 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | B.1.577 | 0.000687 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 1 | B.1.629 | 0.013333 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | B.1.631 | 0.003367 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 1 | B.31 | 0.003731 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | C.18 | 0.002591 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcC | 1 | 1 | C.2 | 0.016129 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | D.2 | 0.000075 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | P.1.15 | 0.000232 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcA | 1 | 1 | P.1.9 | 0.004808 |
ORF1ab/nsp3 | 1206 | S1206S | tcG | tcT | 1 | 1 | P.2 | 0.000187 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
|