CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = S1197R

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31197S1197RS2015RnonsynagCagA151814030.9242426308-6310
ORF1ab/nsp31197S1197RS2015RnonsynAgcCgc15181030.06785246308-6310
ORF1ab/nsp31197S1197RS2015RnonsynagCagG1518120.007905146308-6310

Details of the mutation S1197R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31197S1197RagCagA14031518All0.000268
ORF1ab/nsp31197S1197RAgcCgc1031518All0.00002
ORF1ab/nsp31197S1197RagCagG121518All0.000002
ORF1ab/nsp31197S1197RagCagA10971097B.6.60.975111
ORF1ab/nsp31197S1197RagCagA180181B.60.163785
ORF1ab/nsp31197S1197RAgcCgc1181B.60.00091
ORF1ab/nsp31197S1197RagCagA5054B.1.1.70.000045
ORF1ab/nsp31197S1197RAgcCgc454B.1.1.70.000004
ORF1ab/nsp31197S1197RAgcCgc3434B.1.1.2200.063197
ORF1ab/nsp31197S1197RagCagA2122B.6.40.954545
ORF1ab/nsp31197S1197RagCagG122B.6.40.045455
ORF1ab/nsp31197S1197RagCagA1616B.1.160.160.01487
ORF1ab/nsp31197S1197RagCagA1115B.10.000101
ORF1ab/nsp31197S1197RAgcCgc315B.10.000027
ORF1ab/nsp31197S1197RagCagG115B.10.000009
ORF1ab/nsp31197S1197RAgcCgc89B.1.617.20.00003
ORF1ab/nsp31197S1197RagCagA19B.1.617.20.000004
ORF1ab/nsp31197S1197RAgcCgc77AY.670.00325
ORF1ab/nsp31197S1197RAgcCgc66AY.1210.000812
ORF1ab/nsp31197S1197RagCagG56AY.390.000124
ORF1ab/nsp31197S1197RAgcCgc16AY.390.000025
ORF1ab/nsp31197S1197RAgcCgc35B.1.10.000054
ORF1ab/nsp31197S1197RagCagA25B.1.10.000036
ORF1ab/nsp31197S1197RagCagA35P.10.000047
ORF1ab/nsp31197S1197RAgcCgc25P.10.000032
ORF1ab/nsp31197S1197RagCagA23AY.200.000078
ORF1ab/nsp31197S1197RAgcCgc13AY.200.000039
ORF1ab/nsp31197S1197RAgcCgc23AY.30.00002
ORF1ab/nsp31197S1197RagCagA13AY.30.00001
ORF1ab/nsp31197S1197RAgcCgc23AY.40.000003
ORF1ab/nsp31197S1197RagCagA13AY.40.000002
ORF1ab/nsp31197S1197RagCagA33B0.000383
ORF1ab/nsp31197S1197RAgcCgc33B.1.20.000026
ORF1ab/nsp31197S1197RAgcCgc22AY.1020.000053
ORF1ab/nsp31197S1197RagCagG22AY.1190.000071
ORF1ab/nsp31197S1197RagCagA22AY.20.000712
ORF1ab/nsp31197S1197RAgcCgc22AY.250.000012
ORF1ab/nsp31197S1197RAgcCgc22AY.4.20.000043
ORF1ab/nsp31197S1197RagCagA22AY.440.000012
ORF1ab/nsp31197S1197RAgcCgc22AY.740.000231
ORF1ab/nsp31197S1197RAgcCgc22B.1.1.3860.133333
ORF1ab/nsp31197S1197RAgcCgc22B.1.3360.004878
ORF1ab/nsp31197S1197RagCagA22B.1.466.20.000782
ORF1ab/nsp31197S1197RagCagA22Q.80.00033
ORF1ab/nsp31197S1197RAgcCgc11AY.1030.000006
ORF1ab/nsp31197S1197RAgcCgc11AY.1130.000142
ORF1ab/nsp31197S1197RAgcCgc11AY.1180.000063
ORF1ab/nsp31197S1197RAgcCgc11AY.140.000088
ORF1ab/nsp31197S1197RAgcCgc11AY.290.000016
ORF1ab/nsp31197S1197RagCagG11AY.300.000396
ORF1ab/nsp31197S1197RAgcCgc11AY.430.000004
ORF1ab/nsp31197S1197RagCagG11AY.460.000104
ORF1ab/nsp31197S1197RAgcCgc11AY.50.000021
ORF1ab/nsp31197S1197RAgcCgc11AY.60.000041
ORF1ab/nsp31197S1197RagCagA11AY.750.000056
ORF1ab/nsp31197S1197RagCagA11B.1.1570.002985
ORF1ab/nsp31197S1197RagCagA11B.1.1600.000031
ORF1ab/nsp31197S1197RAgcCgc11B.1.177.430.001477
ORF1ab/nsp31197S1197RagCagG11B.1.2580.000067
ORF1ab/nsp31197S1197RagCagA11B.1.36.100.004785
ORF1ab/nsp31197S1197RagCagA11B.1.3750.00082
ORF1ab/nsp31197S1197RAgcCgc11B.1.4250.002994
ORF1ab/nsp31197S1197RAgcCgc11B.1.5250.000113
ORF1ab/nsp31197S1197RAgcCgc11B.1.5820.000491
ORF1ab/nsp31197S1197RagCagA11B.1.617.10.000129
ORF1ab/nsp31197S1197RAgcCgc11B.1.6370.000073
ORF1ab/nsp31197S1197RagCagA11B.6.30.026316
ORF1ab/nsp31197S1197RAgcCgc11Q.30.000145