CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = R646R

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3646R646RR1464RsyncgGcgA200614770.7362914655-4657
ORF1ab/nsp3646R646RR1464RsyncgGcgT20063560.1774684655-4657
ORF1ab/nsp3646R646RR1464RsynCggAgg20061700.08474584655-4657
ORF1ab/nsp3646R646RR1464RsyncgGcgC200630.001495514655-4657

Details of the mutation R646R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3646R646RcgGcgA14772006All0.000282
ORF1ab/nsp3646R646RcgGcgT3562006All0.000068
ORF1ab/nsp3646R646RCggAgg1702006All0.000033
ORF1ab/nsp3646R646RcgGcgC32006All0.000001
ORF1ab/nsp3646R646RcgGcgA11471147AY.460.11938
ORF1ab/nsp3646R646RcgGcgT220220B.1.1490.753425
ORF1ab/nsp3646R646RcgGcgA180180B.1.3200.224159
ORF1ab/nsp3646R646RCggAgg6387AY.40.000098
ORF1ab/nsp3646R646RcgGcgT1287AY.40.000019
ORF1ab/nsp3646R646RcgGcgA1287AY.40.000019
ORF1ab/nsp3646R646RcgGcgA2764B.1.1.70.000024
ORF1ab/nsp3646R646RCggAgg1964B.1.1.70.000017
ORF1ab/nsp3646R646RcgGcgT1864B.1.1.70.000016
ORF1ab/nsp3646R646RCggAgg4344B.1.20.000379
ORF1ab/nsp3646R646RcgGcgT144B.1.20.000009
ORF1ab/nsp3646R646RcgGcgA3336B.1.1770.000435
ORF1ab/nsp3646R646RcgGcgT336B.1.1770.00004
ORF1ab/nsp3646R646RcgGcgA1731B.1.617.20.000064
ORF1ab/nsp3646R646RcgGcgT731B.1.617.20.000026
ORF1ab/nsp3646R646RCggAgg631B.1.617.20.000023
ORF1ab/nsp3646R646RcgGcgC131B.1.617.20.000004
ORF1ab/nsp3646R646RcgGcgA918AY.440.000055
ORF1ab/nsp3646R646RcgGcgT718AY.440.000043
ORF1ab/nsp3646R646RCggAgg218AY.440.000012
ORF1ab/nsp3646R646RcgGcgT1414B.1.2050.333333
ORF1ab/nsp3646R646RcgGcgT612B.10.000055
ORF1ab/nsp3646R646RCggAgg312B.10.000027
ORF1ab/nsp3646R646RcgGcgA312B.10.000027
ORF1ab/nsp3646R646RcgGcgA1212B.1.4270.000606
ORF1ab/nsp3646R646RCggAgg1111AY.116.10.003426
ORF1ab/nsp3646R646RcgGcgA510AY.30.00005
ORF1ab/nsp3646R646RcgGcgT510AY.30.00005
ORF1ab/nsp3646R646RcgGcgT99AY.290.000142
ORF1ab/nsp3646R646RcgGcgT77AY.330.000467
ORF1ab/nsp3646R646RCggAgg56AY.1030.000031
ORF1ab/nsp3646R646RcgGcgT16AY.1030.000006
ORF1ab/nsp3646R646RcgGcgA35B.1.10.000054
ORF1ab/nsp3646R646RcgGcgT25B.1.10.000036
ORF1ab/nsp3646R646RCggAgg55B.1.1.2910.003712
ORF1ab/nsp3646R646RcgGcgA24AY.1020.000053
ORF1ab/nsp3646R646RcgGcgT24AY.1020.000053
ORF1ab/nsp3646R646RCggAgg34B.1.1.370.000579
ORF1ab/nsp3646R646RcgGcgT14B.1.1.370.000193
ORF1ab/nsp3646R646RcgGcgT44B.1.177.600.000874
ORF1ab/nsp3646R646RcgGcgC130.055556
ORF1ab/nsp3646R646RcgGcgA130.055556
ORF1ab/nsp3646R646RcgGcgT130.055556
ORF1ab/nsp3646R646RcgGcgT33AY.1000.000138
ORF1ab/nsp3646R646RcgGcgT33AY.4.20.000065
ORF1ab/nsp3646R646RcgGcgA33AY.580.002722
ORF1ab/nsp3646R646RcgGcgT33AY.98.10.000145
ORF1ab/nsp3646R646RcgGcgT33B.1.2400.000647
ORF1ab/nsp3646R646RcgGcgT23B.1.5260.000047
ORF1ab/nsp3646R646RcgGcgA13B.1.5260.000024
ORF1ab/nsp3646R646RcgGcgA23B.1.621.10.001012
ORF1ab/nsp3646R646RCggAgg13B.1.621.10.000506
ORF1ab/nsp3646R646RcgGcgA12AY.250.000006
ORF1ab/nsp3646R646RcgGcgT12AY.250.000006
ORF1ab/nsp3646R646RCggAgg12AY.390.000025
ORF1ab/nsp3646R646RcgGcgA12AY.390.000025
ORF1ab/nsp3646R646RcgGcgA22AY.450.000243
ORF1ab/nsp3646R646RcgGcgA22AY.70.000392
ORF1ab/nsp3646R646RcgGcgA12AY.790.001211
ORF1ab/nsp3646R646RcgGcgT12AY.790.001211
ORF1ab/nsp3646R646RcgGcgA12B0.000128
ORF1ab/nsp3646R646RCggAgg12B0.000128
ORF1ab/nsp3646R646RcgGcgT22B.1.1.5190.000079
ORF1ab/nsp3646R646RcgGcgA12B.1.2210.000071
ORF1ab/nsp3646R646RcgGcgT12B.1.2210.000071
ORF1ab/nsp3646R646RcgGcgT22B.1.390.007812
ORF1ab/nsp3646R646RcgGcgA11A0.000387
ORF1ab/nsp3646R646RCggAgg11AY.1130.000142
ORF1ab/nsp3646R646RcgGcgT11AY.130.000161
ORF1ab/nsp3646R646RcgGcgA11AY.170.008197
ORF1ab/nsp3646R646RcgGcgA11AY.340.000097
ORF1ab/nsp3646R646RCggAgg11AY.360.000148
ORF1ab/nsp3646R646RCggAgg11AY.430.000004
ORF1ab/nsp3646R646RcgGcgA11AY.46.60.000072
ORF1ab/nsp3646R646RcgGcgA11AY.470.000031
ORF1ab/nsp3646R646RcgGcgA11AY.60.000041
ORF1ab/nsp3646R646RcgGcgT11AY.750.000056
ORF1ab/nsp3646R646RcgGcgT11AY.760.004831
ORF1ab/nsp3646R646RcgGcgT11AY.880.000884
ORF1ab/nsp3646R646RCggAgg11B.1.1.100.001115
ORF1ab/nsp3646R646RcgGcgT11B.1.1600.000031
ORF1ab/nsp3646R646RcgGcgT11B.1.1700.00431
ORF1ab/nsp3646R646RcgGcgA11B.1.177.730.000566
ORF1ab/nsp3646R646RcgGcgT11B.1.2100.002132
ORF1ab/nsp3646R646RcgGcgT11B.1.258.170.000104
ORF1ab/nsp3646R646RcgGcgT11B.1.3510.00003
ORF1ab/nsp3646R646RcgGcgA11B.1.351.50.0006
ORF1ab/nsp3646R646RcgGcgC11B.1.36.240.006173
ORF1ab/nsp3646R646RcgGcgA11B.1.3690.000285
ORF1ab/nsp3646R646RcgGcgT11B.1.3750.00082
ORF1ab/nsp3646R646RCggAgg11B.1.3960.000706
ORF1ab/nsp3646R646RcgGcgT11B.1.4160.001269
ORF1ab/nsp3646R646RcgGcgA11B.1.4290.000024
ORF1ab/nsp3646R646RCggAgg11B.1.4700.001404
ORF1ab/nsp3646R646RcgGcgT11B.1.5030.002488
ORF1ab/nsp3646R646RcgGcgA11B.1.5950.000261
ORF1ab/nsp3646R646RcgGcgT11B.1.5960.000087
ORF1ab/nsp3646R646RCggAgg11B.1.6230.000536
ORF1ab/nsp3646R646RcgGcgT11B.4.50.011905
ORF1ab/nsp3646R646RcgGcgT11R.10.00009