CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = R558R

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3558R558RR1376RsynCgaAga10594560.4305954391-4393
ORF1ab/nsp3558R558RR1376RsyncgAcgC10593730.3522194391-4393
ORF1ab/nsp3558R558RR1376RsyncgAcgG10592100.19834391-4393
ORF1ab/nsp3558R558RR1376RsyncgAcgT1059200.01888574391-4393

Details of the mutation R558R within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3558R558RCgaAga4561059All0.000087
ORF1ab/nsp3558R558RcgAcgC3731059All0.000071
ORF1ab/nsp3558R558RcgAcgG2101059All0.00004
ORF1ab/nsp3558R558RcgAcgT201059All0.000004
ORF1ab/nsp3558R558RCgaAga312312B.1.1.2530.781955
ORF1ab/nsp3558R558RcgAcgC188224AY.40.000293
ORF1ab/nsp3558R558RcgAcgG22224AY.40.000034
ORF1ab/nsp3558R558RCgaAga14224AY.40.000022
ORF1ab/nsp3558R558RcgAcgC8094B.1.1.70.000072
ORF1ab/nsp3558R558RcgAcgG894B.1.1.70.000007
ORF1ab/nsp3558R558RCgaAga594B.1.1.70.000004
ORF1ab/nsp3558R558RcgAcgT194B.1.1.70.000001
ORF1ab/nsp3558R558RcgAcgG8080AY.290.001262
ORF1ab/nsp3558R558RCgaAga5455AY.390.001334
ORF1ab/nsp3558R558RcgAcgC155AY.390.000025
ORF1ab/nsp3558R558RCgaAga1744B.1.617.20.000064
ORF1ab/nsp3558R558RcgAcgC1244B.1.617.20.000045
ORF1ab/nsp3558R558RcgAcgG1044B.1.617.20.000038
ORF1ab/nsp3558R558RcgAcgT544B.1.617.20.000019
ORF1ab/nsp3558R558RcgAcgG1729AY.250.000102
ORF1ab/nsp3558R558RcgAcgC1129AY.250.000066
ORF1ab/nsp3558R558RCgaAga129AY.250.000006
ORF1ab/nsp3558R558RcgAcgC2424B.1.1770.000316
ORF1ab/nsp3558R558RcgAcgC715AY.430.000031
ORF1ab/nsp3558R558RcgAcgG515AY.430.000022
ORF1ab/nsp3558R558RCgaAga315AY.430.000013
ORF1ab/nsp3558R558RcgAcgG1213AY.750.000672
ORF1ab/nsp3558R558RcgAcgT113AY.750.000056
ORF1ab/nsp3558R558RcgAcgC1212AY.270.000777
ORF1ab/nsp3558R558RCgaAga512B.10.000046
ORF1ab/nsp3558R558RcgAcgG412B.10.000037
ORF1ab/nsp3558R558RcgAcgC312B.10.000027
ORF1ab/nsp3558R558RcgAcgG1111AY.1180.000689
ORF1ab/nsp3558R558RCgaAga79B.1.10.000127
ORF1ab/nsp3558R558RcgAcgG29B.1.10.000036
ORF1ab/nsp3558R558RcgAcgG89P.10.000126
ORF1ab/nsp3558R558RCgaAga19P.10.000016
ORF1ab/nsp3558R558RcgAcgT78AY.230.000488
ORF1ab/nsp3558R558RCgaAga18AY.230.00007
ORF1ab/nsp3558R558RCgaAga58B.1.20.000044
ORF1ab/nsp3558R558RcgAcgG28B.1.20.000018
ORF1ab/nsp3558R558RcgAcgT18B.1.20.000009
ORF1ab/nsp3558R558RcgAcgC77AY.460.000729
ORF1ab/nsp3558R558RCgaAga36AY.440.000018
ORF1ab/nsp3558R558RcgAcgC36AY.440.000018
ORF1ab/nsp3558R558RcgAcgG55B.1.177.350.003455
ORF1ab/nsp3558R558RcgAcgG44AY.29.10.000882
ORF1ab/nsp3558R558RcgAcgG24AY.30.00002
ORF1ab/nsp3558R558RcgAcgC14AY.30.00001
ORF1ab/nsp3558R558RCgaAga14AY.30.00001
ORF1ab/nsp3558R558RcgAcgC23AY.1000.000092
ORF1ab/nsp3558R558RCgaAga13AY.1000.000046
ORF1ab/nsp3558R558RCgaAga23AY.1020.000053
ORF1ab/nsp3558R558RcgAcgC13AY.1020.000027
ORF1ab/nsp3558R558RCgaAga33AY.1030.000019
ORF1ab/nsp3558R558RcgAcgC23AY.1190.000071
ORF1ab/nsp3558R558RcgAcgG13AY.1190.000035
ORF1ab/nsp3558R558RcgAcgG33AY.340.000291
ORF1ab/nsp3558R558RCgaAga33B.1.177.400.015464
ORF1ab/nsp3558R558RCgaAga23B.1.3510.000059
ORF1ab/nsp3558R558RcgAcgT13B.1.3510.00003
ORF1ab/nsp3558R558RcgAcgC22AY.140.000176
ORF1ab/nsp3558R558RCgaAga22AY.200.000078
ORF1ab/nsp3558R558RcgAcgG22AY.46.40.000329
ORF1ab/nsp3558R558RcgAcgC22B.1.1.580.010753
ORF1ab/nsp3558R558RcgAcgT12B.1.1600.000031
ORF1ab/nsp3558R558RCgaAga12B.1.1600.000031
ORF1ab/nsp3558R558RcgAcgG12B.1.177.160.000664
ORF1ab/nsp3558R558RcgAcgC12B.1.177.160.000664
ORF1ab/nsp3558R558RcgAcgC12B.1.360.000146
ORF1ab/nsp3558R558RcgAcgG12B.1.360.000146
ORF1ab/nsp3558R558RcgAcgG22B.1.4270.000101
ORF1ab/nsp3558R558RCgaAga22B.1.5250.000226
ORF1ab/nsp3558R558RcgAcgT12B.1.5960.000087
ORF1ab/nsp3558R558RcgAcgC12B.1.5960.000087
ORF1ab/nsp3558R558RcgAcgC22Q.10.000253
ORF1ab/nsp3558R558RcgAcgG11A.2.40.003367
ORF1ab/nsp3558R558RcgAcgC11AY.1100.000113
ORF1ab/nsp3558R558RCgaAga11AY.1130.000142
ORF1ab/nsp3558R558RcgAcgC11AY.1210.000135
ORF1ab/nsp3558R558RCgaAga11AY.20.000356
ORF1ab/nsp3558R558RcgAcgC11AY.4.20.000022
ORF1ab/nsp3558R558RcgAcgC11AY.46.50.000198
ORF1ab/nsp3558R558RcgAcgG11AY.50.000021
ORF1ab/nsp3558R558RcgAcgG11AY.650.000533
ORF1ab/nsp3558R558RcgAcgC11AY.700.000209
ORF1ab/nsp3558R558RCgaAga11AY.730.000665
ORF1ab/nsp3558R558RcgAcgG11AY.840.000437
ORF1ab/nsp3558R558RcgAcgC11AY.910.00073
ORF1ab/nsp3558R558RCgaAga11B.1.1.2100.005714
ORF1ab/nsp3558R558RCgaAga11B.1.1.3150.008475
ORF1ab/nsp3558R558RCgaAga11B.1.1.3720.000689
ORF1ab/nsp3558R558RcgAcgG11B.1.160.160.000929
ORF1ab/nsp3558R558RCgaAga11B.1.177.70.000165
ORF1ab/nsp3558R558RCgaAga11B.1.2400.000216
ORF1ab/nsp3558R558RcgAcgC11B.1.351.30.000876
ORF1ab/nsp3558R558RcgAcgC11B.1.3810.007812
ORF1ab/nsp3558R558RCgaAga11B.1.3910.001127
ORF1ab/nsp3558R558RcgAcgT11B.1.4200.010417
ORF1ab/nsp3558R558RcgAcgG11B.1.4590.004082
ORF1ab/nsp3558R558RcgAcgT11B.1.4800.002488
ORF1ab/nsp3558R558RcgAcgG11B.1.6090.000479
ORF1ab/nsp3558R558RcgAcgC11B.400.000364
ORF1ab/nsp3558R558RcgAcgC11C.370.000116
ORF1ab/nsp3558R558RcgAcgG11N.30.005814
ORF1ab/nsp3558R558RCgaAga11N.50.001767
ORF1ab/nsp3558R558RCgaAga11P.1.10.000318