CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = R1449S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31449R1449SR2267SnonsynagAagC68600.8823537064-7066
ORF1ab/nsp31449R1449SR2267SnonsynagAagT6870.1029417064-7066
ORF1ab/nsp31449R1449SR2267SnonsynAGaTCa6810.01470597064-7066

Details of the mutation R1449S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31449R1449SagAagC6068All0.000011
ORF1ab/nsp31449R1449SagAagT768All0.000001
ORF1ab/nsp31449R1449SAGaTCa168All0
ORF1ab/nsp31449R1449SagAagC1818AY.40.000028
ORF1ab/nsp31449R1449SagAagC99AY.250.000054
ORF1ab/nsp31449R1449SagAagC57B.1.1.70.000004
ORF1ab/nsp31449R1449SagAagT27B.1.1.70.000002
ORF1ab/nsp31449R1449SagAagC66AY.710.00285
ORF1ab/nsp31449R1449SagAagC55B.1.1.500.003394
ORF1ab/nsp31449R1449SagAagC33B.1.617.20.000011
ORF1ab/nsp31449R1449SagAagT220.111111
ORF1ab/nsp31449R1449SagAagC22AY.420.00008
ORF1ab/nsp31449R1449SagAagC22B.1.4970.00063
ORF1ab/nsp31449R1449SagAagC11AY.1030.000006
ORF1ab/nsp31449R1449SagAagT11AY.1180.000063
ORF1ab/nsp31449R1449SagAagC11AY.120.000316
ORF1ab/nsp31449R1449SagAagC11AY.390.000025
ORF1ab/nsp31449R1449SagAagC11AY.4.40.000409
ORF1ab/nsp31449R1449SagAagC11AY.620.000436
ORF1ab/nsp31449R1449SagAagC11AY.75.10.00018
ORF1ab/nsp31449R1449SagAagT11B.10.000009
ORF1ab/nsp31449R1449SagAagC11B.1.1.3980.003226
ORF1ab/nsp31449R1449SagAagT11B.1.160.280.002924
ORF1ab/nsp31449R1449SagAagC11B.1.36.200.016949
ORF1ab/nsp31449R1449SAGaTCa11C.350.000774
ORF1ab/nsp31449R1449SagAagC11P.10.000016
ORF1ab/nsp31449R1449SagAagC11P.1.140.000048