CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 940 | Q940Q | Q1758Q | syn | caG | caA | 11409 | 11409 | 1 | 5537-5539 |
Details of the mutation Q940Q within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 11409 | 11409 | All | 0.002182 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 8239 | 8239 | AY.74 | 0.952816 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 846 | 846 | AY.73 | 0.562874 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 716 | 716 | AY.72 | 0.97415 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 278 | 278 | B.1.1.7 | 0.000249 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 269 | 269 | B.1.1.205 | 1 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 194 | 194 | AY.4 | 0.000302 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 106 | 106 | B.1.617.2 | 0.000399 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 85 | 85 | AZ.2 | 0.069787 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 70 | 70 | B.1.375 | 0.057377 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 60 | 60 | AY.47 | 0.001866 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 45 | 45 | AY.3 | 0.000448 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 40 | 40 | B.1.617.1 | 0.005159 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 37 | 37 | AY.21 | 0.070209 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 35 | 35 | P.1 | 0.000551 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 28 | 28 | B.1 | 0.000256 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 25 | 25 | AY.45 | 0.003042 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 25 | 25 | B.1.1.231 | 0.077399 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 20 | 20 | AY.103 | 0.000124 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 17 | 17 | AY.25 | 0.000102 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 17 | 17 | B.1.2 | 0.00015 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 14 | 14 | AY.26 | 0.000396 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 13 | 13 | AY.24 | 0.005603 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 11 | 11 | AY.119 | 0.000388 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 10 | 10 | AY.44 | 0.000061 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 10 | 10 | B.1.177.7 | 0.001649 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 9 | 9 | AY.55 | 0.008257 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 7 | 7 | AY.5.3 | 0.002362 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 6 | 6 | AY.75.1 | 0.001082 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 6 | 6 | B.1.177 | 0.000079 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 6 | 6 | B.1.351 | 0.000178 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 5 | 5 | AY.43 | 0.000022 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 5 | 5 | AY.61 | 0.000524 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 5 | 5 | AY.65 | 0.002665 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 5 | 5 | AY.75 | 0.00028 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 5 | 5 | B.1.1 | 0.000091 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 4 | 4 | AY.116.1 | 0.001246 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 4 | 4 | AY.42 | 0.000161 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 4 | 4 | AY.46 | 0.000416 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 4 | 4 | AY.59 | 0.002119 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 4 | 4 | AY.71 | 0.0019 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 4 | 4 | P.1.7 | 0.001277 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 3 | 3 | AY.62 | 0.001307 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 3 | 3 | AY.88 | 0.002653 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 3 | 3 | AY.98.1 | 0.000145 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 3 | 3 | B.1.526 | 0.000071 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 2 | 2 | AY.110 | 0.000225 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 2 | 2 | AY.14 | 0.000176 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 2 | 2 | AY.29 | 0.000032 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 2 | 2 | AY.4.2 | 0.000043 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 2 | 2 | AY.48 | 0.00093 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 2 | 2 | AY.67 | 0.000929 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 2 | 2 | B.1.177.45 | 0.000762 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 2 | 2 | B.1.525 | 0.000226 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 2 | 2 | B.1.575 | 0.000607 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 2 | 2 | P.1.14 | 0.000096 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | 0.055556 | |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | A.1 | 0.000282 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.102 | 0.000027 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.106 | 0.000335 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.117 | 0.000085 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.120 | 0.000037 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.16 | 0.00038 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.28 | 0.00189 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.30 | 0.000396 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.38 | 0.000499 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.51 | 0.000909 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.54 | 0.000095 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.60 | 0.000938 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.8 | 0.000606 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.90 | 0.000684 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | AY.99.2 | 0.000092 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.1.204 | 0.00304 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.1.305 | 0.003861 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.1.306 | 0.000438 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.1.373 | 0.02381 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.160.28 | 0.002924 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.177.81 | 0.000189 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.177.86 | 0.000183 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.258.17 | 0.000104 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.320 | 0.001245 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.429 | 0.000024 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.626 | 0.005714 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | B.43 | 0.014286 |
ORF1ab/nsp3 | 940 | Q940Q | caG | caA | 1 | 1 | D.2 | 0.000075 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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