CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = Q940Q

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3940Q940QQ1758QsyncaGcaA114091140915537-5539

Details of the mutation Q940Q within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3940Q940QcaGcaA1140911409All0.002182
ORF1ab/nsp3940Q940QcaGcaA82398239AY.740.952816
ORF1ab/nsp3940Q940QcaGcaA846846AY.730.562874
ORF1ab/nsp3940Q940QcaGcaA716716AY.720.97415
ORF1ab/nsp3940Q940QcaGcaA278278B.1.1.70.000249
ORF1ab/nsp3940Q940QcaGcaA269269B.1.1.2051
ORF1ab/nsp3940Q940QcaGcaA194194AY.40.000302
ORF1ab/nsp3940Q940QcaGcaA106106B.1.617.20.000399
ORF1ab/nsp3940Q940QcaGcaA8585AZ.20.069787
ORF1ab/nsp3940Q940QcaGcaA7070B.1.3750.057377
ORF1ab/nsp3940Q940QcaGcaA6060AY.470.001866
ORF1ab/nsp3940Q940QcaGcaA4545AY.30.000448
ORF1ab/nsp3940Q940QcaGcaA4040B.1.617.10.005159
ORF1ab/nsp3940Q940QcaGcaA3737AY.210.070209
ORF1ab/nsp3940Q940QcaGcaA3535P.10.000551
ORF1ab/nsp3940Q940QcaGcaA2828B.10.000256
ORF1ab/nsp3940Q940QcaGcaA2525AY.450.003042
ORF1ab/nsp3940Q940QcaGcaA2525B.1.1.2310.077399
ORF1ab/nsp3940Q940QcaGcaA2020AY.1030.000124
ORF1ab/nsp3940Q940QcaGcaA1717AY.250.000102
ORF1ab/nsp3940Q940QcaGcaA1717B.1.20.00015
ORF1ab/nsp3940Q940QcaGcaA1414AY.260.000396
ORF1ab/nsp3940Q940QcaGcaA1313AY.240.005603
ORF1ab/nsp3940Q940QcaGcaA1111AY.1190.000388
ORF1ab/nsp3940Q940QcaGcaA1010AY.440.000061
ORF1ab/nsp3940Q940QcaGcaA1010B.1.177.70.001649
ORF1ab/nsp3940Q940QcaGcaA99AY.550.008257
ORF1ab/nsp3940Q940QcaGcaA77AY.5.30.002362
ORF1ab/nsp3940Q940QcaGcaA66AY.75.10.001082
ORF1ab/nsp3940Q940QcaGcaA66B.1.1770.000079
ORF1ab/nsp3940Q940QcaGcaA66B.1.3510.000178
ORF1ab/nsp3940Q940QcaGcaA55AY.430.000022
ORF1ab/nsp3940Q940QcaGcaA55AY.610.000524
ORF1ab/nsp3940Q940QcaGcaA55AY.650.002665
ORF1ab/nsp3940Q940QcaGcaA55AY.750.00028
ORF1ab/nsp3940Q940QcaGcaA55AY.90.000338
ORF1ab/nsp3940Q940QcaGcaA55B.1.10.000091
ORF1ab/nsp3940Q940QcaGcaA55B.1.1.5190.000199
ORF1ab/nsp3940Q940QcaGcaA44AY.116.10.001246
ORF1ab/nsp3940Q940QcaGcaA44AY.420.000161
ORF1ab/nsp3940Q940QcaGcaA44AY.460.000416
ORF1ab/nsp3940Q940QcaGcaA44AY.590.002119
ORF1ab/nsp3940Q940QcaGcaA44AY.710.0019
ORF1ab/nsp3940Q940QcaGcaA44AY.9.20.000147
ORF1ab/nsp3940Q940QcaGcaA44P.1.70.001277
ORF1ab/nsp3940Q940QcaGcaA33AY.620.001307
ORF1ab/nsp3940Q940QcaGcaA33AY.880.002653
ORF1ab/nsp3940Q940QcaGcaA33AY.98.10.000145
ORF1ab/nsp3940Q940QcaGcaA33B.1.1.280.000934
ORF1ab/nsp3940Q940QcaGcaA33B.1.5260.000071
ORF1ab/nsp3940Q940QcaGcaA33B.1.5960.000261
ORF1ab/nsp3940Q940QcaGcaA22AY.1000.000092
ORF1ab/nsp3940Q940QcaGcaA22AY.1100.000225
ORF1ab/nsp3940Q940QcaGcaA22AY.1130.000285
ORF1ab/nsp3940Q940QcaGcaA22AY.130.000322
ORF1ab/nsp3940Q940QcaGcaA22AY.140.000176
ORF1ab/nsp3940Q940QcaGcaA22AY.230.000139
ORF1ab/nsp3940Q940QcaGcaA22AY.290.000032
ORF1ab/nsp3940Q940QcaGcaA22AY.4.20.000043
ORF1ab/nsp3940Q940QcaGcaA22AY.480.00093
ORF1ab/nsp3940Q940QcaGcaA22AY.670.000929
ORF1ab/nsp3940Q940QcaGcaA22B0.000256
ORF1ab/nsp3940Q940QcaGcaA22B.1.1.3180.000604
ORF1ab/nsp3940Q940QcaGcaA22B.1.177.450.000762
ORF1ab/nsp3940Q940QcaGcaA22B.1.5250.000226
ORF1ab/nsp3940Q940QcaGcaA22B.1.5750.000607
ORF1ab/nsp3940Q940QcaGcaA22P.1.140.000096
ORF1ab/nsp3940Q940QcaGcaA22P.20.000373
ORF1ab/nsp3940Q940QcaGcaA110.055556
ORF1ab/nsp3940Q940QcaGcaA11A.10.000282
ORF1ab/nsp3940Q940QcaGcaA11A.2.50.000499
ORF1ab/nsp3940Q940QcaGcaA11AE.80.000489
ORF1ab/nsp3940Q940QcaGcaA11AY.1020.000027
ORF1ab/nsp3940Q940QcaGcaA11AY.1060.000335
ORF1ab/nsp3940Q940QcaGcaA11AY.1170.000085
ORF1ab/nsp3940Q940QcaGcaA11AY.1200.000037
ORF1ab/nsp3940Q940QcaGcaA11AY.160.00038
ORF1ab/nsp3940Q940QcaGcaA11AY.200.000039
ORF1ab/nsp3940Q940QcaGcaA11AY.280.00189
ORF1ab/nsp3940Q940QcaGcaA11AY.300.000396
ORF1ab/nsp3940Q940QcaGcaA11AY.380.000499
ORF1ab/nsp3940Q940QcaGcaA11AY.4.40.000409
ORF1ab/nsp3940Q940QcaGcaA11AY.400.000964
ORF1ab/nsp3940Q940QcaGcaA11AY.410.000294
ORF1ab/nsp3940Q940QcaGcaA11AY.510.000909
ORF1ab/nsp3940Q940QcaGcaA11AY.530.000288
ORF1ab/nsp3940Q940QcaGcaA11AY.540.000095
ORF1ab/nsp3940Q940QcaGcaA11AY.580.000907
ORF1ab/nsp3940Q940QcaGcaA11AY.600.000938
ORF1ab/nsp3940Q940QcaGcaA11AY.680.000274
ORF1ab/nsp3940Q940QcaGcaA11AY.690.000187
ORF1ab/nsp3940Q940QcaGcaA11AY.80.000606
ORF1ab/nsp3940Q940QcaGcaA11AY.9.10.000084
ORF1ab/nsp3940Q940QcaGcaA11AY.900.000684
ORF1ab/nsp3940Q940QcaGcaA11AY.99.20.000092
ORF1ab/nsp3940Q940QcaGcaA11B.1.1.2040.00304
ORF1ab/nsp3940Q940QcaGcaA11B.1.1.3050.003861
ORF1ab/nsp3940Q940QcaGcaA11B.1.1.3060.000438
ORF1ab/nsp3940Q940QcaGcaA11B.1.1.3110.000358
ORF1ab/nsp3940Q940QcaGcaA11B.1.1.3730.02381
ORF1ab/nsp3940Q940QcaGcaA11B.1.1.3980.003226
ORF1ab/nsp3940Q940QcaGcaA11B.1.160.280.002924
ORF1ab/nsp3940Q940QcaGcaA11B.1.177.210.000076
ORF1ab/nsp3940Q940QcaGcaA11B.1.177.810.000189
ORF1ab/nsp3940Q940QcaGcaA11B.1.177.860.000183
ORF1ab/nsp3940Q940QcaGcaA11B.1.2180.005155
ORF1ab/nsp3940Q940QcaGcaA11B.1.2340.000132
ORF1ab/nsp3940Q940QcaGcaA11B.1.2430.00007
ORF1ab/nsp3940Q940QcaGcaA11B.1.2580.000067
ORF1ab/nsp3940Q940QcaGcaA11B.1.258.170.000104
ORF1ab/nsp3940Q940QcaGcaA11B.1.3200.001245
ORF1ab/nsp3940Q940QcaGcaA11B.1.3670.000792
ORF1ab/nsp3940Q940QcaGcaA11B.1.4290.000024
ORF1ab/nsp3940Q940QcaGcaA11B.1.6090.000479
ORF1ab/nsp3940Q940QcaGcaA11B.1.6260.005714
ORF1ab/nsp3940Q940QcaGcaA11B.1.6370.000073
ORF1ab/nsp3940Q940QcaGcaA11B.430.014286
ORF1ab/nsp3940Q940QcaGcaA11D.20.000075

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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