CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 203 | Q203H | Q1021H | nonsyn | caG | caT | 2219 | 2206 | 0.994142 | 3326-3328 |
ORF1ab/nsp3 | 203 | Q203H | Q1021H | nonsyn | caG | caC | 2219 | 13 | 0.00585849 | 3326-3328 |
Details of the mutation Q203H within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 2206 | 2219 | All | 0.000422 |
ORF1ab/nsp3 | 203 | Q203H | caG | caC | 13 | 2219 | All | 0.000002 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 479 | 485 | B.1.1.7 | 0.000429 |
ORF1ab/nsp3 | 203 | Q203H | caG | caC | 6 | 485 | B.1.1.7 | 0.000005 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 227 | 228 | B.1.177 | 0.002989 |
ORF1ab/nsp3 | 203 | Q203H | caG | caC | 1 | 228 | B.1.177 | 0.000013 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 159 | 160 | AY.4 | 0.000247 |
ORF1ab/nsp3 | 203 | Q203H | caG | caC | 1 | 160 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 123 | 123 | AY.43 | 0.000545 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 115 | 115 | B.1.637 | 0.008403 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 109 | 109 | B.1.617.2 | 0.00041 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 71 | 71 | B.1.466.2 | 0.027778 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 48 | 48 | B.1.1 | 0.000871 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 46 | 46 | AY.4.2 | 0.000998 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 43 | 44 | AY.44 | 0.000262 |
ORF1ab/nsp3 | 203 | Q203H | caG | caC | 1 | 44 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 38 | 38 | AY.4.2.1 | 0.005662 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 37 | 37 | B.1.258.17 | 0.003847 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 33 | 33 | AY.119 | 0.001165 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 32 | 33 | B.1 | 0.000293 |
ORF1ab/nsp3 | 203 | Q203H | caG | caC | 1 | 33 | B.1 | 0.000009 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 32 | 32 | AY.103 | 0.000199 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 32 | 32 | B.1.526 | 0.000752 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 30 | 30 | AY.30 | 0.011872 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 28 | 28 | AY.98.1 | 0.001356 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 25 | 25 | AY.25 | 0.00015 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 25 | 25 | AY.3 | 0.000249 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 24 | 24 | B.1.2 | 0.000211 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 22 | 22 | AY.102 | 0.000583 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 20 | 20 | B.1.221 | 0.001421 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 19 | 19 | B.1.160 | 0.000593 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 18 | 18 | AY.26 | 0.00051 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 18 | 18 | AY.54 | 0.001716 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 16 | 16 | B.1.36 | 0.002334 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 15 | 15 | AY.33 | 0.001002 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 15 | 15 | AY.5 | 0.00031 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 15 | 15 | AY.9.2 | 0.000551 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 14 | 14 | B.1.351 | 0.000416 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 13 | 13 | AY.39 | 0.000321 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 12 | 12 | P.1 | 0.000189 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 11 | 11 | AY.74 | 0.001272 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 9 | 9 | B.1.427 | 0.000454 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 9 | 9 | B.1.525 | 0.001018 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 8 | 8 | AY.99.2 | 0.000737 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 7 | 7 | B.1.1.216 | 0.006233 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 7 | 7 | B.1.1.67 | 0.031963 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 7 | 7 | B.1.36.10 | 0.033493 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 6 | 6 | AY.16 | 0.002278 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 6 | 6 | AY.20 | 0.000233 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 6 | 6 | AY.61 | 0.000629 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 5 | 5 | AY.29 | 0.000079 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 5 | 5 | AY.56 | 0.008026 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 5 | 5 | B.1.1.519 | 0.000199 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 5 | 5 | B.1.267 | 0.092593 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 5 | 5 | B.1.621 | 0.000443 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 4 | 4 | AY.117 | 0.000338 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 4 | 4 | AY.120.1 | 0.001284 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 4 | 4 | AY.42 | 0.000161 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 4 | 4 | B.1.1.222 | 0.000816 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 4 | 4 | B.1.628 | 0.001409 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 3 | 3 | AY.121 | 0.000406 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 3 | 3 | AY.45 | 0.000365 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 3 | 3 | AY.46.6 | 0.000217 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 3 | 3 | B | 0.000383 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 3 | 3 | B.1.243 | 0.000209 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 3 | 3 | B.1.429 | 0.000071 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 3 | 3 | B.1.595 | 0.000783 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 3 | 3 | P.1.10 | 0.000808 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 2 | 2 | A.11 | 0.117647 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 2 | 2 | AY.101 | 0.000981 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 2 | 2 | AY.16.1 | 0.00094 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 2 | 2 | AY.23 | 0.000139 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 2 | 2 | AY.39.1 | 0.000079 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 2 | 2 | AY.4.5 | 0.000215 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 2 | 2 | AY.46 | 0.000208 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 2 | 2 | AY.53 | 0.000575 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 2 | 2 | AY.72 | 0.002721 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 2 | 2 | AY.77 | 0.002255 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 2 | 2 | B.1.1.174 | 0.006757 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 2 | 2 | B.1.1.228 | 0.006098 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 2 | 2 | B.1.1.317 | 0.000823 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 2 | 2 | B.1.177.18 | 0.00232 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 2 | 2 | B.1.177.38 | 0.020833 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 2 | 2 | B.1.177.58 | 0.002663 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 2 | 2 | B.1.351.2 | 0.000605 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 2 | 2 | B.1.400 | 0.000858 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 2 | 2 | B.1.588 | 0.00182 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 2 | 2 | B.1.597 | 0.009259 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 2 | 2 | B.6 | 0.00182 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | AD.2 | 0.000219 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | AY.111 | 0.000183 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | AY.114 | 0.000231 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | AY.12 | 0.000316 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | AY.29.1 | 0.000221 |
ORF1ab/nsp3 | 203 | Q203H | caG | caC | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | AY.4.3 | 0.000842 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | AY.49 | 0.003195 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | AY.55 | 0.000917 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | AY.57 | 0.000656 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | AY.6 | 0.000041 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | AY.63 | 0.000387 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | AY.65 | 0.000533 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | AY.69 | 0.000187 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | AY.75.1 | 0.00018 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | AY.85 | 0.000427 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | AY.9 | 0.000068 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | AY.9.1 | 0.000084 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | AY.94 | 0.000443 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | AY.98 | 0.000079 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | AZ.2 | 0.000821 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | B.1.1.204 | 0.00304 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | B.1.1.26 | 0.005236 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | B.1.1.279 | 0.001121 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | B.1.1.372 | 0.000689 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | B.1.110.3 | 0.000718 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | B.1.177.12 | 0.000152 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | B.1.213 | 0.014925 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | B.1.239 | 0.001221 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | B.1.258 | 0.000067 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | B.1.260 | 0.003344 |
ORF1ab/nsp3 | 203 | Q203H | caG | caC | 1 | 1 | B.1.329 | 0.000608 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | B.1.36.18 | 0.00042 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp3 | 203 | Q203H | caG | caC | 1 | 1 | B.1.438.1 | 0.000107 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | B.1.568 | 0.001111 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | B.1.596 | 0.000087 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | C.37 | 0.000116 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 203 | Q203H | caG | caT | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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