CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = Q1842L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31842Q1842LQ2660LnonsyncAacTa28220.7857148243-8245
ORF1ab/nsp31842Q1842LQ2660LnonsynCAaTTa2830.1071438243-8245
ORF1ab/nsp31842Q1842LQ2660LnonsyncAAcTT2830.1071438243-8245

Details of the mutation Q1842L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31842Q1842LcAacTa2228All0.000004
ORF1ab/nsp31842Q1842LcAAcTT328All0.000001
ORF1ab/nsp31842Q1842LCAaTTa328All0.000001
ORF1ab/nsp31842Q1842LcAacTa380.166667
ORF1ab/nsp31842Q1842LCAaTTa380.166667
ORF1ab/nsp31842Q1842LcAAcTT280.111111
ORF1ab/nsp31842Q1842LcAacTa55AY.40.000008
ORF1ab/nsp31842Q1842LcAacTa44AY.430.000018
ORF1ab/nsp31842Q1842LcAacTa22AY.1000.000092
ORF1ab/nsp31842Q1842LcAacTa22AY.250.000012
ORF1ab/nsp31842Q1842LcAacTa22B.1.1.70.000002
ORF1ab/nsp31842Q1842LcAacTa11AY.370.000316
ORF1ab/nsp31842Q1842LcAacTa11AY.390.000025
ORF1ab/nsp31842Q1842LcAacTa11AY.440.000006
ORF1ab/nsp31842Q1842LcAAcTT11B.1.617.20.000004
ORF1ab/nsp31842Q1842LcAacTa11B.6.10.026316