CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = Q1240del1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31240Q1240del1Q2058del1delcaGca-530.66437-6439
ORF1ab/nsp31240Q1240del1Q2058del1delCag-ag510.26437-6439
ORF1ab/nsp31240Q1240del1Q2058del1delcAgc-g510.26437-6439

Details of the mutation Q1240del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31240Q1240del1caGca-35All0.000001
ORF1ab/nsp31240Q1240del1Cag-ag15All0
ORF1ab/nsp31240Q1240del1cAgc-g15All0
ORF1ab/nsp31240Q1240del1Cag-ag11AY.430.000004
ORF1ab/nsp31240Q1240del1caGca-11B.10.000009
ORF1ab/nsp31240Q1240del1caGca-11B.1.177.210.000076
ORF1ab/nsp31240Q1240del1cAgc-g11B.1.177.870.000728
ORF1ab/nsp31240Q1240del1caGca-11B.1.258.170.000104