CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = P985S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3985P985SP1803SnonsynCctTct516151590.9996125672-5674
ORF1ab/nsp3985P985SP1803SnonsynCcTTcC516120.0003875225672-5674

Details of the mutation P985S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3985P985SCctTct51595161All0.000987
ORF1ab/nsp3985P985SCcTTcC25161All0
ORF1ab/nsp3985P985SCctTct11271127B.1.1390.826246
ORF1ab/nsp3985P985SCctTct910910B.1.1.70.000815
ORF1ab/nsp3985P985SCctTct473473AY.40.000736
ORF1ab/nsp3985P985SCctTct359359AY.930.098034
ORF1ab/nsp3985P985SCctTct127127B.1.617.20.000478
ORF1ab/nsp3985P985SCctTct9999AY.430.000439
ORF1ab/nsp3985P985SCctTct9898B.1.20.000863
ORF1ab/nsp3985P985SCctTct9797B.1.3750.079508
ORF1ab/nsp3985P985SCctTct8989B.1.36.360.053582
ORF1ab/nsp3985P985SCctTct8686P.10.001355
ORF1ab/nsp3985P985SCctTct8585B.10.000779
ORF1ab/nsp3985P985SCctTct8080B.1.5341
ORF1ab/nsp3985P985SCctTct5455AY.1030.000335
ORF1ab/nsp3985P985SCcTTcC155AY.1030.000006
ORF1ab/nsp3985P985SCctTct5555AY.250.000331
ORF1ab/nsp3985P985SCctTct5555B.1.1600.001715
ORF1ab/nsp3985P985SCctTct4646U.10.589744
ORF1ab/nsp3985P985SCctTct3737AY.1200.001376
ORF1ab/nsp3985P985SCctTct3737AY.46.60.002672
ORF1ab/nsp3985P985SCctTct3737B.1.3510.0011
ORF1ab/nsp3985P985SCctTct3636AY.290.000568
ORF1ab/nsp3985P985SCctTct3636B.1.10.000653
ORF1ab/nsp3985P985SCctTct3636B.1.1.390.018349
ORF1ab/nsp3985P985SCctTct3535AY.440.000213
ORF1ab/nsp3985P985SCctTct3333B.1.4290.000776
ORF1ab/nsp3985P985SCctTct3232AY.4.20.000694
ORF1ab/nsp3985P985SCctTct3030AY.4.50.003225
ORF1ab/nsp3985P985SCctTct3030B.1.1770.000395
ORF1ab/nsp3985P985SCctTct3030P.20.005599
ORF1ab/nsp3985P985SCctTct2727AY.30.000269
ORF1ab/nsp3985P985SCctTct2727B.1.2430.001879
ORF1ab/nsp3985P985SCctTct2626C.370.003018
ORF1ab/nsp3985P985SCctTct2525B.1.1.2140.001386
ORF1ab/nsp3985P985SCctTct2323B.1.1.3180.00694
ORF1ab/nsp3985P985SCctTct2222AY.330.001469
ORF1ab/nsp3985P985SCctTct2222B.1.351.50.013189
ORF1ab/nsp3985P985SCctTct2121AY.200.000816
ORF1ab/nsp3985P985SCctTct2121B.1.1.5190.000834
ORF1ab/nsp3985P985SCctTct2121B.1.6210.001859
ORF1ab/nsp3985P985SCctTct2020AY.260.000566
ORF1ab/nsp3985P985SCctTct2020B.1.177.570.00562
ORF1ab/nsp3985P985SCctTct1919AY.1180.00119
ORF1ab/nsp3985P985SCctTct1919B.1.5260.000447
ORF1ab/nsp3985P985SCctTct1818B.1.5740.03871
ORF1ab/nsp3985P985SCctTct1717B.1.438.10.001823
ORF1ab/nsp3985P985SCctTct1616B.1.177.600.003495
ORF1ab/nsp3985P985SCctTct1414AY.1020.000371
ORF1ab/nsp3985P985SCctTct1414B.1.2210.000994
ORF1ab/nsp3985P985SCctTct1313AY.230.000907
ORF1ab/nsp3985P985SCctTct1313AY.390.000321
ORF1ab/nsp3985P985SCctTct1313B.1.6370.00095
ORF1ab/nsp3985P985SCctTct1212A.2.5.20.018868
ORF1ab/nsp3985P985SCctTct1212AY.1000.000552
ORF1ab/nsp3985P985SCctTct1212B.1.3690.003423
ORF1ab/nsp3985P985SCctTct1111B.1.36.80.011
ORF1ab/nsp3985P985SCctTct1010AY.4.2.10.00149
ORF1ab/nsp3985P985SCctTct1010B.1.2580.000665
ORF1ab/nsp3985P985SCctTct1010P.1.140.000478
ORF1ab/nsp3985P985SCctTct99AY.420.000362
ORF1ab/nsp3985P985SCctTct99B.1.177.540.005458
ORF1ab/nsp3985P985SCctTct99B.1.177.810.001704
ORF1ab/nsp3985P985SCctTct88AY.450.000973
ORF1ab/nsp3985P985SCctTct88AY.50.000165
ORF1ab/nsp3985P985SCctTct88AY.60.000329
ORF1ab/nsp3985P985SCctTct88B.1.1.500.005431
ORF1ab/nsp3985P985SCctTct77AY.46.40.001152
ORF1ab/nsp3985P985SCctTct77B.1.1.3060.003069
ORF1ab/nsp3985P985SCctTct77P.1.170.001132
ORF1ab/nsp3985P985SCctTct77R.10.00063
ORF1ab/nsp3985P985SCctTct66AY.1190.000212
ORF1ab/nsp3985P985SCctTct66AY.540.000572
ORF1ab/nsp3985P985SCctTct66AY.90.000406
ORF1ab/nsp3985P985SCctTct66B.1.416.10.009375
ORF1ab/nsp3985P985SCctTct66B.1.4270.000303
ORF1ab/nsp3985P985SCctTct66B.1.4280.006122
ORF1ab/nsp3985P985SCctTct66B.1.575.10.014634
ORF1ab/nsp3985P985SCctTct66B.1.5950.001566
ORF1ab/nsp3985P985SCctTct55AY.140.00044
ORF1ab/nsp3985P985SCctTct55AY.740.000578
ORF1ab/nsp3985P985SCctTct55AY.750.00028
ORF1ab/nsp3985P985SCctTct55AY.99.20.000461
ORF1ab/nsp3985P985SCctTct55B.1.36.290.002587
ORF1ab/nsp3985P985SCctTct55B.1.5750.001517
ORF1ab/nsp3985P985SCctTct55B.1.617.10.000645
ORF1ab/nsp3985P985SCctTct55Q.80.000825
ORF1ab/nsp3985P985SCctTct44AY.880.003537
ORF1ab/nsp3985P985SCctTct44AY.9.10.000335
ORF1ab/nsp3985P985SCctTct44B.1.1.2160.003562
ORF1ab/nsp3985P985SCctTct44B.1.1690.059701
ORF1ab/nsp3985P985SCctTct44B.1.621.10.002023
ORF1ab/nsp3985P985SCctTct44Q.10.000505
ORF1ab/nsp3985P985SCctTct33AY.10.001187
ORF1ab/nsp3985P985SCctTct33AY.1090.002219
ORF1ab/nsp3985P985SCctTct33AY.270.000194
ORF1ab/nsp3985P985SCctTct33AY.340.000291
ORF1ab/nsp3985P985SCctTct33B0.000383
ORF1ab/nsp3985P985SCctTct33B.1.1.1690.054545
ORF1ab/nsp3985P985SCctTct33B.1.1.2220.000612
ORF1ab/nsp3985P985SCctTct33B.1.1.700.001023
ORF1ab/nsp3985P985SCctTct33B.1.177.520.005272
ORF1ab/nsp3985P985SCctTct33B.1.2010.017045
ORF1ab/nsp3985P985SCctTct33B.1.2340.000396
ORF1ab/nsp3985P985SCctTct33B.1.258.170.000312
ORF1ab/nsp3985P985SCctTct33B.1.5090.002597
ORF1ab/nsp3985P985SCctTct33B.1.5640.001278
ORF1ab/nsp3985P985SCctTct33B.1.5650.002431
ORF1ab/nsp3985P985SCctTct33B.1.6090.001438
ORF1ab/nsp3985P985SCctTct33B.1.6280.001057
ORF1ab/nsp3985P985SCctTct22AY.130.000322
ORF1ab/nsp3985P985SCctTct22AY.34.10.00102
ORF1ab/nsp3985P985SCctTct22AY.360.000296
ORF1ab/nsp3985P985SCctTct22AY.380.000999
ORF1ab/nsp3985P985SCctTct22AY.39.10.000079
ORF1ab/nsp3985P985SCctTct22AY.410.000588
ORF1ab/nsp3985P985SCctTct22AY.46.50.000397
ORF1ab/nsp3985P985SCctTct22AY.9.20.000073
ORF1ab/nsp3985P985SCctTct22B.1.1.10.000653
ORF1ab/nsp3985P985SCctTct22B.1.1.2860.005797
ORF1ab/nsp3985P985SCctTct22B.1.1.2940.002532
ORF1ab/nsp3985P985SCctTct22B.1.1.3170.000823
ORF1ab/nsp3985P985SCctTct22B.1.1.330.000842
ORF1ab/nsp3985P985SCctTct22B.1.1.4330.002849
ORF1ab/nsp3985P985SCctTct22B.1.177.120.000303
ORF1ab/nsp3985P985SCctTct22B.1.177.20.009091
ORF1ab/nsp3985P985SCctTct22B.1.177.210.000153
ORF1ab/nsp3985P985SCctTct22B.1.177.400.010309
ORF1ab/nsp3985P985SCctTct22B.1.177.840.013333
ORF1ab/nsp3985P985SCctTct22B.1.177.860.000367
ORF1ab/nsp3985P985SCctTct22B.1.36.310.003503
ORF1ab/nsp3985P985SCctTct22B.1.3780.013699
ORF1ab/nsp3985P985SCctTct22B.1.4000.000858
ORF1ab/nsp3985P985SCctTct22B.1.466.20.000782
ORF1ab/nsp3985P985SCctTct22B.1.5170.000854
ORF1ab/nsp3985P985SCctTct22B.1.5820.000981
ORF1ab/nsp3985P985SCctTct22B.1.5960.000174
ORF1ab/nsp3985P985SCctTct22B.1.6200.001892
ORF1ab/nsp3985P985SCctTct22B.1.6230.001073
ORF1ab/nsp3985P985SCcTTcC12B.1.6330.041667
ORF1ab/nsp3985P985SCctTct12B.1.6330.041667
ORF1ab/nsp3985P985SCctTct22C.160.002121
ORF1ab/nsp3985P985SCctTct22D.20.00015
ORF1ab/nsp3985P985SCctTct22Q.30.00029
ORF1ab/nsp3985P985SCctTct11A0.000387
ORF1ab/nsp3985P985SCctTct11A.10.000282
ORF1ab/nsp3985P985SCctTct11A.110.058824
ORF1ab/nsp3985P985SCctTct11A.2.50.000499
ORF1ab/nsp3985P985SCctTct11A.23.10.000704
ORF1ab/nsp3985P985SCctTct11AD.20.000219
ORF1ab/nsp3985P985SCctTct11AY.1100.000113
ORF1ab/nsp3985P985SCctTct11AY.1170.000085
ORF1ab/nsp3985P985SCctTct11AY.240.000431
ORF1ab/nsp3985P985SCctTct11AY.3.10.000085
ORF1ab/nsp3985P985SCctTct11AY.320.000532
ORF1ab/nsp3985P985SCctTct11AY.39.1.10.000725
ORF1ab/nsp3985P985SCctTct11AY.470.000031
ORF1ab/nsp3985P985SCctTct11AY.5.30.000337
ORF1ab/nsp3985P985SCctTct11AY.610.000105
ORF1ab/nsp3985P985SCctTct11AY.630.000387
ORF1ab/nsp3985P985SCctTct11AY.660.00107
ORF1ab/nsp3985P985SCctTct11AY.680.000274
ORF1ab/nsp3985P985SCctTct11AY.7.10.000113
ORF1ab/nsp3985P985SCctTct11AY.700.000209
ORF1ab/nsp3985P985SCctTct11AY.870.000833
ORF1ab/nsp3985P985SCctTct11AY.900.000684
ORF1ab/nsp3985P985SCctTct11AY.920.000287
ORF1ab/nsp3985P985SCctTct11AY.99.10.001553
ORF1ab/nsp3985P985SCctTct11AZ.20.000821
ORF1ab/nsp3985P985SCctTct11B.1.1.1570.000913
ORF1ab/nsp3985P985SCctTct11B.1.1.1980.001468
ORF1ab/nsp3985P985SCctTct11B.1.1.2550.00303
ORF1ab/nsp3985P985SCctTct11B.1.1.270.00565
ORF1ab/nsp3985P985SCctTct11B.1.1.2970.002237
ORF1ab/nsp3985P985SCctTct11B.1.1.3040.002809
ORF1ab/nsp3985P985SCctTct11B.1.1.3200.018182
ORF1ab/nsp3985P985SCctTct11B.1.1.3490.010309
ORF1ab/nsp3985P985SCctTct11B.1.1.370.000193
ORF1ab/nsp3985P985SCctTct11B.1.1.3970.002252
ORF1ab/nsp3985P985SCctTct11B.1.1.4060.006494
ORF1ab/nsp3985P985SCctTct11B.1.1.410.006329
ORF1ab/nsp3985P985SCctTct11B.1.1.4190.007407
ORF1ab/nsp3985P985SCctTct11B.1.1.4640.001473
ORF1ab/nsp3985P985SCctTct11B.1.1.510.001718
ORF1ab/nsp3985P985SCctTct11B.1.1.5230.001563
ORF1ab/nsp3985P985SCctTct11B.1.1030.019231
ORF1ab/nsp3985P985SCctTct11B.1.110.30.000718
ORF1ab/nsp3985P985SCctTct11B.1.1110.001175
ORF1ab/nsp3985P985SCctTct11B.1.1260.001276
ORF1ab/nsp3985P985SCctTct11B.1.1470.000756
ORF1ab/nsp3985P985SCctTct11B.1.177.100.000878
ORF1ab/nsp3985P985SCctTct11B.1.177.150.000631
ORF1ab/nsp3985P985SCctTct11B.1.177.160.000664
ORF1ab/nsp3985P985SCctTct11B.1.177.320.00135
ORF1ab/nsp3985P985SCctTct11B.1.177.340.052632
ORF1ab/nsp3985P985SCctTct11B.1.177.580.001332
ORF1ab/nsp3985P985SCctTct11B.1.177.650.000665
ORF1ab/nsp3985P985SCctTct11B.1.177.730.000566
ORF1ab/nsp3985P985SCctTct11B.1.177.750.001041
ORF1ab/nsp3985P985SCctTct11B.1.2060.000816
ORF1ab/nsp3985P985SCctTct11B.1.221.30.000833
ORF1ab/nsp3985P985SCctTct11B.1.2360.002053
ORF1ab/nsp3985P985SCctTct11B.1.2400.000216
ORF1ab/nsp3985P985SCctTct11B.1.2480.029412
ORF1ab/nsp3985P985SCctTct11B.1.2600.003344
ORF1ab/nsp3985P985SCctTct11B.1.3110.000275
ORF1ab/nsp3985P985SCctTct11B.1.3290.000608
ORF1ab/nsp3985P985SCctTct11B.1.3350.010309
ORF1ab/nsp3985P985SCctTct11B.1.3370.005587
ORF1ab/nsp3985P985SCctTct11B.1.360.000146
ORF1ab/nsp3985P985SCctTct11B.1.36.10.00114
ORF1ab/nsp3985P985SCctTct11B.1.3990.001934
ORF1ab/nsp3985P985SCctTct11B.1.4010.008197
ORF1ab/nsp3985P985SCctTct11B.1.4040.001302
ORF1ab/nsp3985P985SCctTct11B.1.4480.002625
ORF1ab/nsp3985P985SCctTct11B.1.4950.009091
ORF1ab/nsp3985P985SCctTct11B.1.4970.000315
ORF1ab/nsp3985P985SCctTct11B.1.5240.001406
ORF1ab/nsp3985P985SCctTct11B.1.5250.000113
ORF1ab/nsp3985P985SCctTct11B.1.5430.01
ORF1ab/nsp3985P985SCctTct11B.1.5540.004405
ORF1ab/nsp3985P985SCctTct11B.1.5800.004065
ORF1ab/nsp3985P985SCctTct11B.1.6350.017544
ORF1ab/nsp3985P985SCctTct11B.1.90.006173
ORF1ab/nsp3985P985SCctTct11B.1.930.000934
ORF1ab/nsp3985P985SCctTct11B.30.000831
ORF1ab/nsp3985P985SCctTct11B.60.00091
ORF1ab/nsp3985P985SCctTct11C.300.001727
ORF1ab/nsp3985P985SCctTct11C.360.000911
ORF1ab/nsp3985P985SCctTct11K.30.006173
ORF1ab/nsp3985P985SCctTct11P.1.150.000232

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.