CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 968 | P968S | P1786S | nonsyn | Cct | Tct | 2984 | 2979 | 0.998324 | 5621-5623 |
ORF1ab/nsp3 | 968 | P968S | P1786S | nonsyn | CCt | AGt | 2984 | 3 | 0.00100536 | 5621-5623 |
ORF1ab/nsp3 | 968 | P968S | P1786S | nonsyn | CcT | TcA | 2984 | 1 | 0.000335121 | 5621-5623 |
ORF1ab/nsp3 | 968 | P968S | P1786S | nonsyn | CcT | TcG | 2984 | 1 | 0.000335121 | 5621-5623 |
Details of the mutation P968S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 2979 | 2984 | All | 0.00057 |
ORF1ab/nsp3 | 968 | P968S | CCt | AGt | 3 | 2984 | All | 0.000001 |
ORF1ab/nsp3 | 968 | P968S | CcT | TcG | 1 | 2984 | All | 0 |
ORF1ab/nsp3 | 968 | P968S | CcT | TcA | 1 | 2984 | All | 0 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1137 | 1141 | B.1.1.7 | 0.001018 |
ORF1ab/nsp3 | 968 | P968S | CCt | AGt | 3 | 1141 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 968 | P968S | CcT | TcA | 1 | 1141 | B.1.1.7 | 0.000001 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 203 | 203 | AY.20 | 0.00789 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 173 | 173 | B.1.2 | 0.001523 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 164 | 164 | AY.4 | 0.000255 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 124 | 124 | B.1.617.2 | 0.000467 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 81 | 81 | AY.25 | 0.000487 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 73 | 73 | B.1.1.15 | 0.986486 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 72 | 72 | AY.44 | 0.000438 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 55 | 55 | AY.26 | 0.001557 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 47 | 47 | AY.65 | 0.025053 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 41 | 41 | AY.117 | 0.003465 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 38 | 38 | AY.103 | 0.000236 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 37 | 37 | AY.4.2 | 0.000802 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 31 | 31 | B.1.429 | 0.000729 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 30 | 30 | B.1 | 0.000275 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 29 | 29 | AY.93 | 0.007919 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 28 | 28 | AY.3 | 0.000278 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 24 | 24 | AY.5 | 0.000496 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 23 | 23 | B.1.160.18 | 0.167883 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 23 | 23 | P.1 | 0.000362 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 20 | 20 | B.1.221 | 0.001421 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 19 | 19 | B.1.160 | 0.000593 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 19 | 19 | B.1.177.81 | 0.003597 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 18 | 18 | AY.43 | 0.00008 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 16 | 16 | B.1.351 | 0.000476 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 16 | 16 | B.1.427 | 0.000808 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 15 | 15 | B.1.1.433 | 0.021368 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 14 | 14 | B.1.1.214 | 0.000776 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 14 | 14 | B.1.214.2 | 0.008393 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 13 | 13 | B.1.1.519 | 0.000516 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 13 | 13 | B.1.177.83 | 0.019259 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 12 | 12 | AY.102 | 0.000318 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 12 | 12 | B.1.1 | 0.000218 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 12 | 12 | B.1.408 | 0.04428 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 10 | 10 | B.1.112 | 0.051813 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 10 | 10 | B.1.177 | 0.000132 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 9 | 9 | AY.120 | 0.000335 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 9 | 9 | AY.61 | 0.000943 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 9 | 9 | B.1.177.32 | 0.012146 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 9 | 9 | B.1.258.17 | 0.000936 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 9 | 9 | B.1.539 | 0.157895 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 8 | 8 | AY.39 | 0.000198 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 8 | 8 | B.1.1.316 | 0.007401 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 8 | 8 | B.1.637 | 0.000585 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 7 | 7 | AY.119 | 0.000247 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 7 | 7 | AY.39.1 | 0.000277 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 7 | 7 | AY.54 | 0.000667 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 7 | 7 | B.1.526 | 0.000165 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 6 | 6 | B.1.1.159 | 0.028037 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 6 | 6 | B.1.36 | 0.000875 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 6 | 6 | B.1.621 | 0.000531 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 5 | 5 | AY.33 | 0.000334 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 5 | 5 | AY.46.4 | 0.000823 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 4 | 4 | AY.45 | 0.000487 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 4 | 4 | AY.47 | 0.000124 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 4 | 4 | AY.9 | 0.00027 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 4 | 4 | B.1.1.63 | 0.001543 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 4 | 4 | B.1.36.29 | 0.002069 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 4 | 4 | B.1.596 | 0.000349 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 4 | 4 | C.14 | 0.017316 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 3 | 3 | A.2.5 | 0.001497 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 3 | 3 | AY.100 | 0.000138 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 3 | 3 | AY.109 | 0.002219 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 3 | 3 | AY.110 | 0.000338 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 3 | 3 | AY.29 | 0.000047 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 3 | 3 | AY.34 | 0.000291 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 3 | 3 | AY.42 | 0.000121 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 3 | 3 | AY.6 | 0.000123 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 3 | 3 | B.1.1.25 | 0.001706 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 3 | 3 | B.1.1.420 | 0.003018 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 3 | 3 | B.1.128 | 0.001906 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 3 | 3 | B.1.177.86 | 0.00055 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 3 | 3 | B.1.351.2 | 0.000908 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 3 | 3 | B.1.36.8 | 0.003 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 3 | 3 | B.1.577 | 0.002062 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 2 | 2 | AY.106 | 0.00067 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 2 | 2 | AY.114 | 0.000462 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 2 | 2 | AY.118 | 0.000125 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 2 | 2 | AY.16.1 | 0.00094 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 2 | 2 | AY.3.1 | 0.000171 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 2 | 2 | AY.60 | 0.001876 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 2 | 2 | AY.71 | 0.00095 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 2 | 2 | AY.74 | 0.000231 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 2 | 2 | AY.92 | 0.000575 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 2 | 2 | B | 0.000256 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 2 | 2 | B.1.1.216 | 0.001781 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 2 | 2 | B.1.1.294 | 0.002532 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 2 | 2 | B.1.110.3 | 0.001437 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 2 | 2 | B.1.177.75 | 0.002081 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 2 | 2 | B.1.305 | 0.004301 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 2 | 2 | B.1.361 | 0.002577 |
ORF1ab/nsp3 | 968 | P968S | CcT | TcG | 1 | 2 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 2 | B.1.525 | 0.000113 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 2 | 2 | B.1.617.1 | 0.000258 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 2 | 2 | B.1.619.1 | 0.001283 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 2 | 2 | C.37 | 0.000232 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 2 | 2 | N.5 | 0.003534 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | A | 0.000387 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | A.28 | 0.002646 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | AY.101 | 0.00049 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | AY.14 | 0.000088 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | AY.15 | 0.002222 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | AY.23 | 0.00007 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | AY.34.1 | 0.00051 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | AY.53 | 0.000288 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | AY.62 | 0.000436 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | AY.77 | 0.001127 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | AY.78 | 0.001541 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | AY.79 | 0.001211 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | AY.86 | 0.00083 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | AY.88 | 0.000884 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | B.1.1.207 | 0.001182 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | B.1.1.27 | 0.00565 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | B.1.1.343 | 0.020833 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | B.1.1.432 | 0.001266 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | B.1.1.434 | 0.000349 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | B.1.177.21 | 0.000076 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | B.1.177.46 | 0.000918 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | B.1.221.4 | 0.004167 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | B.1.328 | 0.03125 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | B.1.351.3 | 0.000876 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | B.1.469 | 0.00361 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | B.1.470 | 0.001404 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | B.1.575 | 0.000303 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | B.1.595 | 0.000261 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | B.1.618 | 0.004032 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | B.3 | 0.000831 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | P.1.11 | 0.010204 |
ORF1ab/nsp3 | 968 | P968S | Cct | Tct | 1 | 1 | P.1.12 | 0.000484 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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