CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 874 | P874S | P1692S | nonsyn | Cca | Tca | 4989 | 4987 | 0.999599 | 5339-5341 |
ORF1ab/nsp3 | 874 | P874S | P1692S | nonsyn | CcA | TcG | 4989 | 2 | 0.000400882 | 5339-5341 |
Details of the mutation P874S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 4987 | 4989 | All | 0.000954 |
ORF1ab/nsp3 | 874 | P874S | CcA | TcG | 2 | 4989 | All | 0 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 532 | 532 | B.1.1.157 | 0.485845 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 497 | 497 | B.1.1.7 | 0.000445 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 406 | 406 | B.1.617.2 | 0.001529 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 394 | 394 | AY.4 | 0.000613 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 355 | 355 | AY.53 | 0.10207 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 243 | 243 | B.1.1.243 | 0.991837 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 201 | 201 | B.1.2 | 0.00177 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 200 | 200 | B.1.416.1 | 0.3125 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 154 | 154 | B.1 | 0.001411 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 102 | 102 | AY.44 | 0.000621 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 97 | 97 | AY.43 | 0.00043 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 89 | 89 | B.1.36 | 0.012985 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 86 | 86 | P.1.16 | 0.032174 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 85 | 85 | AY.25 | 0.000511 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 84 | 84 | AY.103 | 0.000522 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 79 | 79 | AY.33 | 0.005275 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 59 | 59 | B.1.1 | 0.00107 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 59 | 59 | P.1 | 0.000929 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 56 | 56 | AY.3 | 0.000557 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 50 | 50 | AY.14 | 0.004401 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 46 | 46 | B.1.369 | 0.01312 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 45 | 45 | B.1.526 | 0.001058 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 45 | 45 | C.37 | 0.005223 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 43 | 43 | B.1.177 | 0.000566 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 40 | 40 | D.2 | 0.003002 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 25 | 25 | B.1.160 | 0.00078 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 25 | 25 | B.1.177.58 | 0.033289 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 24 | 24 | B.1.1.228 | 0.073171 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 23 | 23 | AY.9.2 | 0.000845 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 22 | 22 | B.1.575 | 0.006675 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 21 | 21 | AY.98 | 0.001659 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 19 | 19 | AY.102 | 0.000504 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 19 | 19 | AY.114 | 0.004391 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 19 | 19 | AY.39 | 0.00047 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 16 | 16 | B.1.429 | 0.000376 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 15 | 15 | AY.29 | 0.000237 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 15 | 15 | AY.54 | 0.00143 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 14 | 14 | A.2.5 | 0.006986 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 14 | 14 | AY.119 | 0.000494 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 14 | 14 | AY.4.2 | 0.000304 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 14 | 14 | B.1.456 | 0.045752 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 13 | 13 | AY.100 | 0.000598 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 13 | 13 | AY.20 | 0.000505 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 13 | 13 | AY.5 | 0.000268 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 13 | 13 | B.1.1.519 | 0.000516 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 13 | 13 | B.1.177.81 | 0.002461 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 12 | 12 | AY.26 | 0.00034 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 12 | 12 | AZ.2.1 | 0.097561 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 12 | 12 | B.1.351 | 0.000357 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 12 | 12 | B.1.39 | 0.046875 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 12 | 12 | B.1.517 | 0.005124 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 11 | 11 | B.1.126 | 0.014031 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 11 | 11 | B.1.177.6 | 0.010742 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 10 | 10 | AY.3.1 | 0.000853 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 10 | 10 | AY.35 | 0.00233 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 10 | 10 | B.1.279 | 0.005136 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 9 | 9 | AY.106 | 0.003014 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 9 | 9 | B.1.361 | 0.011598 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 8 | 8 | AY.116 | 0.002294 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 8 | 8 | AY.47 | 0.000249 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 8 | 8 | AY.98.1 | 0.000387 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 8 | 8 | B.1.438.1 | 0.000858 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 8 | 8 | B.1.625 | 0.018824 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 7 | 7 | AY.36 | 0.001037 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 7 | 7 | AY.46.6 | 0.000505 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 7 | 7 | AY.61 | 0.000733 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 7 | 7 | B.1.110.3 | 0.005029 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 7 | 7 | B.1.234 | 0.000924 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 7 | 7 | B.1.621 | 0.00062 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 7 | 7 | C.23 | 0.040698 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 6 | 6 | AY.52 | 0.004886 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 6 | 6 | AY.75 | 0.000336 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 6 | 6 | AY.99.2 | 0.000553 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 6 | 6 | B.1.1.222 | 0.001224 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 6 | 6 | B.1.177.4 | 0.001266 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 6 | 6 | B.1.243 | 0.000418 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 6 | 6 | B.1.551 | 0.007742 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 6 | 6 | P.1.14 | 0.000287 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 5 | 5 | AY.117 | 0.000423 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 5 | 5 | AY.121 | 0.000677 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 5 | 5 | AY.42 | 0.000201 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 5 | 5 | B.1.1.214 | 0.000277 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 5 | 5 | B.1.1.434 | 0.001743 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 5 | 5 | B.1.160.32 | 0.021459 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 5 | 5 | B.1.427 | 0.000252 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 5 | 5 | B.1.497 | 0.001574 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 5 | 5 | B.1.628 | 0.001762 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 4 | 4 | AY.34 | 0.000388 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 4 | 4 | AY.39.1 | 0.000158 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 4 | 4 | AY.6 | 0.000165 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 4 | 4 | AY.64 | 0.002381 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 4 | 4 | AY.85 | 0.001709 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 4 | 4 | B.1.258.17 | 0.000416 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 4 | 4 | B.1.350 | 0.01173 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 4 | 4 | B.1.577 | 0.002749 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 4 | 4 | B.1.588 | 0.00364 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 4 | 4 | B.1.595 | 0.001044 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 4 | 4 | P.1.10 | 0.001078 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 4 | 4 | P.1.15 | 0.000929 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 3 | 3 | AY.10 | 0.00159 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 3 | 3 | AY.120 | 0.000112 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 3 | 3 | AY.69 | 0.00056 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 3 | 3 | AY.75.1 | 0.000541 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 3 | 3 | AY.9.1 | 0.000251 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 3 | 3 | B.1.177.11 | 0.005093 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 3 | 3 | B.1.177.72 | 0.010169 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 3 | 3 | B.1.550 | 0.041096 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 3 | 3 | B.1.627 | 0.006061 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 3 | 3 | B.1.78 | 0.025641 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 3 | 3 | P.2 | 0.00056 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 3 | 3 | Q.7 | 0.003333 |
ORF1ab/nsp3 | 874 | P874S | CcA | TcG | 2 | 2 | 0.111111 | |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 2 | 2 | A | 0.000774 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 2 | 2 | A.2.4 | 0.006734 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 2 | 2 | AY.108 | 0.002205 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 2 | 2 | AY.11 | 0.002677 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 2 | 2 | AY.113 | 0.000285 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 2 | 2 | AY.13 | 0.000322 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 2 | 2 | AY.19 | 0.002281 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 2 | 2 | AY.23.1 | 0.000835 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 2 | 2 | AY.30 | 0.000791 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 2 | 2 | AY.62 | 0.000871 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 2 | 2 | AY.65 | 0.001066 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 2 | 2 | AY.72 | 0.002721 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 2 | 2 | AY.73 | 0.001331 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 2 | 2 | AY.9 | 0.000135 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 2 | 2 | B.1.1.1 | 0.000653 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 2 | 2 | B.1.1.10 | 0.00223 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 2 | 2 | B.1.1.347 | 0.036364 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 2 | 2 | B.1.1.362 | 0.011236 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 2 | 2 | B.1.1.39 | 0.001019 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 2 | 2 | B.1.1.464 | 0.002946 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 2 | 2 | B.1.177.17 | 0.001642 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 2 | 2 | B.1.177.19 | 0.002861 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 2 | 2 | B.1.177.21 | 0.000153 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 2 | 2 | B.1.177.23 | 0.006472 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 2 | 2 | B.1.177.45 | 0.000762 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 2 | 2 | B.1.177.50 | 0.00939 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 2 | 2 | B.1.36.29 | 0.001035 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 2 | 2 | B.1.466 | 0.046512 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 2 | 2 | B.1.601 | 0.060606 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 2 | 2 | B.1.631 | 0.006734 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 2 | 2 | C.37.1 | 0.005236 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 2 | 2 | P.6 | 0.006289 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 2 | 2 | R.1 | 0.00018 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | A.2 | 0.000662 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | A.2.5.2 | 0.001572 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | A.3 | 0.002096 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | AE.8 | 0.000489 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | AP.1 | 0.001502 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | AY.1 | 0.000396 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | AY.118 | 0.000063 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | AY.120.2 | 0.001285 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | AY.16.1 | 0.00047 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | AY.2 | 0.000356 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | AY.27 | 0.000065 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | AY.32 | 0.000532 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | AY.40 | 0.000964 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | AY.46.1 | 0.001027 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | AY.46.2 | 0.000635 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | AY.46.5 | 0.000198 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | AY.48 | 0.000465 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | AY.68 | 0.000274 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | AY.70 | 0.000209 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | AY.92 | 0.000287 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | AY.96 | 0.002075 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B | 0.000128 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.1.148 | 0.008772 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.1.154 | 0.04 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.1.172 | 0.018182 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.1.176 | 0.000439 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.1.192 | 0.002309 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.1.225 | 0.007194 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.1.25 | 0.000569 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.1.265 | 0.003155 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.1.284 | 0.000107 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.1.309 | 0.005848 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.1.326 | 0.001761 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.1.34 | 0.013158 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.1.420 | 0.001006 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.1.72 | 0.030303 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.139 | 0.000733 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.160.14 | 0.002119 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.177.15 | 0.000631 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.177.18 | 0.00116 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.177.44 | 0.000519 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.177.77 | 0.000726 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.177.85 | 0.005435 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.189 | 0.004292 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.206 | 0.000816 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.265 | 0.001271 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.282 | 0.014925 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.346 | 0.001311 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.356 | 0.001727 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.36.10 | 0.004785 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.36.16 | 0.001425 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.36.17 | 0.000494 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.36.31 | 0.001751 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.36.38 | 0.001642 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.36.7 | 0.004 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.378 | 0.006849 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.380 | 0.006623 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.409 | 0.000781 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.462 | 0.007246 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.466.2 | 0.000391 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.467 | 0.04 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.595.2 | 0.04 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.595.4 | 0.007299 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.599 | 0.00365 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.619 | 0.000871 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.9.5 | 0.005682 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.1.93 | 0.000934 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | B.40 | 0.000364 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | C.16 | 0.00106 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | D.3 | 0.005917 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | N.1 | 0.016949 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | P.1.12 | 0.000484 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 874 | P874S | Cca | Tca | 1 | 1 | Q.2 | 0.000613 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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