CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = P723P

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3723P723PP1541PsynccTccC8705050.580464886-4888
ORF1ab/nsp3723P723PP1541PsynccTccA8703390.3896554886-4888
ORF1ab/nsp3723P723PP1541PsynccTccG870260.02988514886-4888

Details of the mutation P723P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3723P723PccTccC505870All0.000097
ORF1ab/nsp3723P723PccTccA339870All0.000065
ORF1ab/nsp3723P723PccTccG26870All0.000005
ORF1ab/nsp3723P723PccTccA140142B.1.4920.985915
ORF1ab/nsp3723P723PccTccC2142B.1.4920.014085
ORF1ab/nsp3723P723PccTccA9696B.1.177.450.036599
ORF1ab/nsp3723P723PccTccC4084B.1.1.70.000036
ORF1ab/nsp3723P723PccTccA2484B.1.1.70.000021
ORF1ab/nsp3723P723PccTccG2084B.1.1.70.000018
ORF1ab/nsp3723P723PccTccC8080AY.50.001652
ORF1ab/nsp3723P723PccTccC5254AY.40.000081
ORF1ab/nsp3723P723PccTccG154AY.40.000002
ORF1ab/nsp3723P723PccTccA154AY.40.000002
ORF1ab/nsp3723P723PccTccC4848AY.99.20.004424
ORF1ab/nsp3723P723PccTccC3943B.1.617.20.000147
ORF1ab/nsp3723P723PccTccA443B.1.617.20.000015
ORF1ab/nsp3723P723PccTccC3940AY.250.000235
ORF1ab/nsp3723P723PccTccG140AY.250.000006
ORF1ab/nsp3723P723PccTccC2929B.1.617.10.00374
ORF1ab/nsp3723P723PccTccC2125AY.1030.00013
ORF1ab/nsp3723P723PccTccA425AY.1030.000025
ORF1ab/nsp3723P723PccTccC2224AY.430.000097
ORF1ab/nsp3723P723PccTccA124AY.430.000004
ORF1ab/nsp3723P723PccTccG124AY.430.000004
ORF1ab/nsp3723P723PccTccA2323AY.1200.000855
ORF1ab/nsp3723P723PccTccA1319AY.1020.000345
ORF1ab/nsp3723P723PccTccC619AY.1020.000159
ORF1ab/nsp3723P723PccTccC1515AY.610.001572
ORF1ab/nsp3723P723PccTccC1010AY.390.000247
ORF1ab/nsp3723P723PccTccC88B.1.20.00007
ORF1ab/nsp3723P723PccTccC57AY.440.00003
ORF1ab/nsp3723P723PccTccA27AY.440.000012
ORF1ab/nsp3723P723PccTccC77B.1.2210.000497
ORF1ab/nsp3723P723PccTccA77Q.10.000884
ORF1ab/nsp3723P723PccTccC46AY.290.000063
ORF1ab/nsp3723P723PccTccG26AY.290.000032
ORF1ab/nsp3723P723PccTccC36B.1.5260.000071
ORF1ab/nsp3723P723PccTccA36B.1.5260.000071
ORF1ab/nsp3723P723PccTccC44AY.9.20.000147
ORF1ab/nsp3723P723PccTccC44B.1.1.5190.000159
ORF1ab/nsp3723P723PccTccC33AE.80.001467
ORF1ab/nsp3723P723PccTccC33AY.1190.000106
ORF1ab/nsp3723P723PccTccC33AY.140.000264
ORF1ab/nsp3723P723PccTccC33AY.260.000085
ORF1ab/nsp3723P723PccTccC33AY.470.000093
ORF1ab/nsp3723P723PccTccC33AY.75.10.000541
ORF1ab/nsp3723P723PccTccA23B.10.000018
ORF1ab/nsp3723P723PccTccC13B.10.000009
ORF1ab/nsp3723P723PccTccC33B.1.1770.00004
ORF1ab/nsp3723P723PccTccA33B.1.2580.0002
ORF1ab/nsp3723P723PccTccA33P.10.000047
ORF1ab/nsp3723P723PccTccA22AY.1210.000271
ORF1ab/nsp3723P723PccTccC22AY.200.000078
ORF1ab/nsp3723P723PccTccA22AY.46.40.000329
ORF1ab/nsp3723P723PccTccC22B.1.10.000036
ORF1ab/nsp3723P723PccTccA22B.1.177.690.002967
ORF1ab/nsp3723P723PccTccC22B.1.2180.010309
ORF1ab/nsp3723P723PccTccC22B.1.4290.000047
ORF1ab/nsp3723P723PccTccC12B.1.6370.000073
ORF1ab/nsp3723P723PccTccA12B.1.6370.000073
ORF1ab/nsp3723P723PccTccA22Q.80.00033
ORF1ab/nsp3723P723PccTccC11AY.1060.000335
ORF1ab/nsp3723P723PccTccC11AY.1140.000231
ORF1ab/nsp3723P723PccTccC11AY.130.000161
ORF1ab/nsp3723P723PccTccC11AY.230.00007
ORF1ab/nsp3723P723PccTccC11AY.30.00001
ORF1ab/nsp3723P723PccTccC11AY.300.000396
ORF1ab/nsp3723P723PccTccC11AY.340.000097
ORF1ab/nsp3723P723PccTccC11AY.360.000148
ORF1ab/nsp3723P723PccTccC11AY.4.20.000022
ORF1ab/nsp3723P723PccTccC11AY.4.30.000842
ORF1ab/nsp3723P723PccTccC11AY.4.50.000107
ORF1ab/nsp3723P723PccTccC11AY.410.000294
ORF1ab/nsp3723P723PccTccC11AY.460.000104
ORF1ab/nsp3723P723PccTccC11AY.5.40.000277
ORF1ab/nsp3723P723PccTccC11AY.60.000041
ORF1ab/nsp3723P723PccTccC11AY.70.000196
ORF1ab/nsp3723P723PccTccC11AY.780.001541
ORF1ab/nsp3723P723PccTccA11AY.840.000437
ORF1ab/nsp3723P723PccTccC11AY.90.000068
ORF1ab/nsp3723P723PccTccC11AY.960.002075
ORF1ab/nsp3723P723PccTccA11AY.980.000079
ORF1ab/nsp3723P723PccTccC11B.1.1.1350.004695
ORF1ab/nsp3723P723PccTccC11B.1.1.2220.000204
ORF1ab/nsp3723P723PccTccC11B.1.1.2630.001558
ORF1ab/nsp3723P723PccTccC11B.1.1.2740.005051
ORF1ab/nsp3723P723PccTccG11B.1.1.280.000311
ORF1ab/nsp3723P723PccTccC11B.1.1.3170.000412
ORF1ab/nsp3723P723PccTccA11B.1.1.3370.003597
ORF1ab/nsp3723P723PccTccC11B.1.1.390.00051
ORF1ab/nsp3723P723PccTccC11B.1.1.4340.000349
ORF1ab/nsp3723P723PccTccC11B.1.177.350.000691
ORF1ab/nsp3723P723PccTccC11B.1.3460.001311
ORF1ab/nsp3723P723PccTccC11B.1.36.220.001208
ORF1ab/nsp3723P723PccTccC11B.1.4270.00005
ORF1ab/nsp3723P723PccTccC11B.1.5960.000087
ORF1ab/nsp3723P723PccTccC11B.1.6210.000089
ORF1ab/nsp3723P723PccTccC11B.280.003279
ORF1ab/nsp3723P723PccTccA11B.3.10.001658
ORF1ab/nsp3723P723PccTccC11C.370.000116
ORF1ab/nsp3723P723PccTccC11P.1.70.000319
ORF1ab/nsp3723P723PccTccC11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.