CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = P466P

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3466P466PP1284PsynccAccG132412730.961484115-4117
ORF1ab/nsp3466P466PP1284PsynccAccT1324280.0211484115-4117
ORF1ab/nsp3466P466PP1284PsynccAccC1324230.01737164115-4117

Details of the mutation P466P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3466P466PccAccG12731324All0.000243
ORF1ab/nsp3466P466PccAccT281324All0.000005
ORF1ab/nsp3466P466PccAccC231324All0.000004
ORF1ab/nsp3466P466PccAccG871871AY.4.30.733165
ORF1ab/nsp3466P466PccAccG190195AY.40.000296
ORF1ab/nsp3466P466PccAccT3195AY.40.000005
ORF1ab/nsp3466P466PccAccC2195AY.40.000003
ORF1ab/nsp3466P466PccAccG4552B.1.1.70.00004
ORF1ab/nsp3466P466PccAccC652B.1.1.70.000005
ORF1ab/nsp3466P466PccAccT152B.1.1.70.000001
ORF1ab/nsp3466P466PccAccG2626AY.1030.000161
ORF1ab/nsp3466P466PccAccG2021AY.440.000122
ORF1ab/nsp3466P466PccAccT121AY.440.000006
ORF1ab/nsp3466P466PccAccG1014AY.50.000206
ORF1ab/nsp3466P466PccAccC414AY.50.000083
ORF1ab/nsp3466P466PccAccG1414B.1.617.20.000053
ORF1ab/nsp3466P466PccAccG911AY.390.000222
ORF1ab/nsp3466P466PccAccT211AY.390.000049
ORF1ab/nsp3466P466PccAccC610AY.430.000027
ORF1ab/nsp3466P466PccAccG410AY.430.000018
ORF1ab/nsp3466P466PccAccG78B.10.000064
ORF1ab/nsp3466P466PccAccT18B.10.000009
ORF1ab/nsp3466P466PccAccG77AY.3.10.000597
ORF1ab/nsp3466P466PccAccT66AY.39.10.000238
ORF1ab/nsp3466P466PccAccG45P.10.000063
ORF1ab/nsp3466P466PccAccC15P.10.000016
ORF1ab/nsp3466P466PccAccG44AY.1190.000141
ORF1ab/nsp3466P466PccAccG44AY.360.000593
ORF1ab/nsp3466P466PccAccG24B.1.20.000018
ORF1ab/nsp3466P466PccAccT24B.1.20.000018
ORF1ab/nsp3466P466PccAccG33AY.250.000018
ORF1ab/nsp3466P466PccAccG33AY.30.00003
ORF1ab/nsp3466P466PccAccG23B.1.1.500.001358
ORF1ab/nsp3466P466PccAccT13B.1.1.500.000679
ORF1ab/nsp3466P466PccAccG22AY.1020.000053
ORF1ab/nsp3466P466PccAccG22AY.200.000078
ORF1ab/nsp3466P466PccAccG22AY.240.000862
ORF1ab/nsp3466P466PccAccG22AY.260.000057
ORF1ab/nsp3466P466PccAccG22AY.340.000194
ORF1ab/nsp3466P466PccAccT22AY.46.60.000144
ORF1ab/nsp3466P466PccAccT22AY.470.000062
ORF1ab/nsp3466P466PccAccG22B.1.10.000036
ORF1ab/nsp3466P466PccAccG22B.1.1.5190.000079
ORF1ab/nsp3466P466PccAccG22B.1.362.20.009434
ORF1ab/nsp3466P466PccAccT22C.300.003454
ORF1ab/nsp3466P466PccAccT110.055556
ORF1ab/nsp3466P466PccAccT11AE.80.000489
ORF1ab/nsp3466P466PccAccG11AK.10.012658
ORF1ab/nsp3466P466PccAccG11AY.100.00053
ORF1ab/nsp3466P466PccAccG11AY.1000.000046
ORF1ab/nsp3466P466PccAccG11AY.1160.000287
ORF1ab/nsp3466P466PccAccG11AY.120.10.000321
ORF1ab/nsp3466P466PccAccG11AY.140.000088
ORF1ab/nsp3466P466PccAccC11AY.160.00038
ORF1ab/nsp3466P466PccAccG11AY.230.00007
ORF1ab/nsp3466P466PccAccG11AY.4.20.000022
ORF1ab/nsp3466P466PccAccT11AY.4.50.000107
ORF1ab/nsp3466P466PccAccG11AY.400.000964
ORF1ab/nsp3466P466PccAccG11AY.420.00004
ORF1ab/nsp3466P466PccAccG11AY.46.20.000635
ORF1ab/nsp3466P466PccAccG11AY.5.30.000337
ORF1ab/nsp3466P466PccAccG11AY.580.000907
ORF1ab/nsp3466P466PccAccG11AY.650.000533
ORF1ab/nsp3466P466PccAccG11AY.7.20.000559
ORF1ab/nsp3466P466PccAccG11AY.90.000068
ORF1ab/nsp3466P466PccAccG11AY.99.20.000092
ORF1ab/nsp3466P466PccAccG11B0.000128
ORF1ab/nsp3466P466PccAccG11B.1.1.1760.000439
ORF1ab/nsp3466P466PccAccT11B.1.1.2220.000204
ORF1ab/nsp3466P466PccAccG11B.1.1.2430.004082
ORF1ab/nsp3466P466PccAccC11B.1.1.4200.001006
ORF1ab/nsp3466P466PccAccG11B.1.1.4340.000349
ORF1ab/nsp3466P466PccAccG11B.1.1080.005814
ORF1ab/nsp3466P466PccAccG11B.1.1820.007246
ORF1ab/nsp3466P466PccAccG11B.1.2220.001692
ORF1ab/nsp3466P466PccAccT11B.1.2430.00007
ORF1ab/nsp3466P466PccAccG11B.1.351.30.000876
ORF1ab/nsp3466P466PccAccG11B.1.360.000146
ORF1ab/nsp3466P466PccAccG11B.1.5260.000024
ORF1ab/nsp3466P466PccAccG11B.1.575.20.004808
ORF1ab/nsp3466P466PccAccG11B.1.6210.000089
ORF1ab/nsp3466P466PccAccC11C.350.000774
ORF1ab/nsp3466P466PccAccG11C.370.000116
ORF1ab/nsp3466P466PccAccG11P.20.000187
ORF1ab/nsp3466P466PccAccC11Q.10.000126
ORF1ab/nsp3466P466PccAccG11R.10.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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