CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = P402P

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3402P402PP1220PsynccTccC194940.4845363923-3925
ORF1ab/nsp3402P402PP1220PsynccTccG194520.2680413923-3925
ORF1ab/nsp3402P402PP1220PsynccTccA194480.2474233923-3925

Details of the mutation P402P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3402P402PccTccC94194All0.000018
ORF1ab/nsp3402P402PccTccG52194All0.00001
ORF1ab/nsp3402P402PccTccA48194All0.000009
ORF1ab/nsp3402P402PccTccA2545B.1.1.70.000022
ORF1ab/nsp3402P402PccTccC1445B.1.1.70.000013
ORF1ab/nsp3402P402PccTccG645B.1.1.70.000005
ORF1ab/nsp3402P402PccTccG1017AY.40.000016
ORF1ab/nsp3402P402PccTccA617AY.40.000009
ORF1ab/nsp3402P402PccTccC117AY.40.000002
ORF1ab/nsp3402P402PccTccC1010P.10.000158
ORF1ab/nsp3402P402PccTccC88B.1.1.3160.007401
ORF1ab/nsp3402P402PccTccG88B.1.2580.000532
ORF1ab/nsp3402P402PccTccA78B.1.6210.00062
ORF1ab/nsp3402P402PccTccC18B.1.6210.000089
ORF1ab/nsp3402P402PccTccC77B.1.1770.000092
ORF1ab/nsp3402P402PccTccG66B.1.36.180.002521
ORF1ab/nsp3402P402PccTccC56B.1.617.20.000019
ORF1ab/nsp3402P402PccTccA16B.1.617.20.000004
ORF1ab/nsp3402P402PccTccC35AY.440.000018
ORF1ab/nsp3402P402PccTccG25AY.440.000012
ORF1ab/nsp3402P402PccTccC44AY.250.000024
ORF1ab/nsp3402P402PccTccC44B.10.000037
ORF1ab/nsp3402P402PccTccG44B.1.1.5190.000159
ORF1ab/nsp3402P402PccTccC44B.1.1600.000125
ORF1ab/nsp3402P402PccTccG44B.1.2820.059701
ORF1ab/nsp3402P402PccTccC24B.1.5960.000174
ORF1ab/nsp3402P402PccTccG24B.1.5960.000174
ORF1ab/nsp3402P402PccTccG44C.360.003643
ORF1ab/nsp3402P402PccTccC33AY.1030.000019
ORF1ab/nsp3402P402PccTccC33AY.1160.00086
ORF1ab/nsp3402P402PccTccC33AY.4.2.10.000447
ORF1ab/nsp3402P402PccTccA22AY.420.00008
ORF1ab/nsp3402P402PccTccC12AY.430.000004
ORF1ab/nsp3402P402PccTccA12AY.430.000004
ORF1ab/nsp3402P402PccTccC22AY.50.000041
ORF1ab/nsp3402P402PccTccA22B.1.10.000036
ORF1ab/nsp3402P402PccTccG22B.1.2400.000431
ORF1ab/nsp3402P402PccTccC22B.1.258.170.000208
ORF1ab/nsp3402P402PccTccA22B.1.4270.000101
ORF1ab/nsp3402P402PccTccC110.055556
ORF1ab/nsp3402P402PccTccC11AY.1000.000046
ORF1ab/nsp3402P402PccTccC11AY.1180.000063
ORF1ab/nsp3402P402PccTccC11AY.1190.000035
ORF1ab/nsp3402P402PccTccC11AY.1200.000037
ORF1ab/nsp3402P402PccTccC11AY.230.00007
ORF1ab/nsp3402P402PccTccC11AY.390.000025
ORF1ab/nsp3402P402PccTccC11AY.4.20.000022
ORF1ab/nsp3402P402PccTccG11AY.450.000122
ORF1ab/nsp3402P402PccTccG11AY.470.000031
ORF1ab/nsp3402P402PccTccC11AY.590.00053
ORF1ab/nsp3402P402PccTccC11AY.9.20.000037
ORF1ab/nsp3402P402PccTccC11B.1.1.10.000327
ORF1ab/nsp3402P402PccTccC11B.1.1.2850.006536
ORF1ab/nsp3402P402PccTccC11B.1.1.3150.008475
ORF1ab/nsp3402P402PccTccG11B.1.160.160.000929
ORF1ab/nsp3402P402PccTccC11B.1.20.000009
ORF1ab/nsp3402P402PccTccA11B.1.2220.001692
ORF1ab/nsp3402P402PccTccC11B.1.3510.00003
ORF1ab/nsp3402P402PccTccC11B.1.5260.000024
ORF1ab/nsp3402P402PccTccC11B.1.5300.007143
ORF1ab/nsp3402P402PccTccG11B.1.6090.000479
ORF1ab/nsp3402P402PccTccA11R.10.00009