CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = P389L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3389P389LP1207LnonsyncCtcTt234823450.9987223884-3886
ORF1ab/nsp3389P389LP1207LnonsyncCTcTA234820.0008517893884-3886
ORF1ab/nsp3389P389LP1207LnonsyncCTcTC234810.0004258943884-3886

Details of the mutation P389L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3389P389LcCtcTt23452348All0.000449
ORF1ab/nsp3389P389LcCTcTA22348All0
ORF1ab/nsp3389P389LcCTcTC12348All0
ORF1ab/nsp3389P389LcCtcTt335335B.1.1.70.0003
ORF1ab/nsp3389P389LcCtcTt297297B.1.4290.006988
ORF1ab/nsp3389P389LcCtcTt193193B.1.6120.511936
ORF1ab/nsp3389P389LcCtcTt162162B.1.10.002939
ORF1ab/nsp3389P389LcCtcTt112112AY.750.006275
ORF1ab/nsp3389P389LcCtcTt102102AY.250.000614
ORF1ab/nsp3389P389LcCtcTt8585B.1.4270.004292
ORF1ab/nsp3389P389LcCtcTt6969B.1.1.2650.217666
ORF1ab/nsp3389P389LcCtcTt6868AY.40.000106
ORF1ab/nsp3389P389LcCtcTt6565AY.1030.000404
ORF1ab/nsp3389P389LcCtcTt6363B.1.617.20.000237
ORF1ab/nsp3389P389LcCtcTt6161AY.50.00126
ORF1ab/nsp3389P389LcCtcTt5858B.1.2561
ORF1ab/nsp3389P389LcCtcTt4343B.10.000394
ORF1ab/nsp3389P389LcCtcTt3535B.1.351.30.030675
ORF1ab/nsp3389P389LcCtcTt3535Q.20.021472
ORF1ab/nsp3389P389LcCtcTt3232AY.430.000142
ORF1ab/nsp3389P389LcCtcTt3131B.1.20.000273
ORF1ab/nsp3389P389LcCtcTt2929B.1.5260.000682
ORF1ab/nsp3389P389LcCtcTt2727B.1.3510.000803
ORF1ab/nsp3389P389LcCtcTt2525AY.260.000708
ORF1ab/nsp3389P389LcCtcTt2323B.1.1600.000717
ORF1ab/nsp3389P389LcCtcTt2222AY.440.000134
ORF1ab/nsp3389P389LcCtcTt1818AY.690.00336
ORF1ab/nsp3389P389LcCtcTt1616B.1.360.002334
ORF1ab/nsp3389P389LcCtcTt1515AY.30.000149
ORF1ab/nsp3389P389LcCtcTt1414B.1.177.810.002651
ORF1ab/nsp3389P389LcCtcTt1313B.1.2580.000865
ORF1ab/nsp3389P389LcCtcTt1313P.10.000205
ORF1ab/nsp3389P389LcCtcTt1212AY.1210.001624
ORF1ab/nsp3389P389LcCtcTt1010AY.1000.00046
ORF1ab/nsp3389P389LcCtcTt1010B.1.5700.029412
ORF1ab/nsp3389P389LcCtcTt99AY.330.000601
ORF1ab/nsp3389P389LcCtcTt99P.20.00168
ORF1ab/nsp3389P389LcCtcTt88AY.1140.001849
ORF1ab/nsp3389P389LcCtcTt77AU.20.016949
ORF1ab/nsp3389P389LcCtcTt77B.1.1.2220.001428
ORF1ab/nsp3389P389LcCtcTt66AY.1200.000223
ORF1ab/nsp3389P389LcCtcTt66AZ.20.004926
ORF1ab/nsp3389P389LcCtcTt66B.1.5960.000523
ORF1ab/nsp3389P389LcCtcTt55AY.1190.000177
ORF1ab/nsp3389P389LcCtcTt55AY.60.000206
ORF1ab/nsp3389P389LcCtcTt55B.1.1.10.001633
ORF1ab/nsp3389P389LcCtcTt55B.1.1770.000066
ORF1ab/nsp3389P389LcCtcTt55B.1.6370.000365
ORF1ab/nsp3389P389LcCtcTt44AY.1020.000106
ORF1ab/nsp3389P389LcCtcTt44AY.1130.00057
ORF1ab/nsp3389P389LcCtcTt44AY.350.000932
ORF1ab/nsp3389P389LcCtcTt34AY.46.60.000217
ORF1ab/nsp3389P389LcCTcTA14AY.46.60.000072
ORF1ab/nsp3389P389LcCtcTt44AY.9.20.000147
ORF1ab/nsp3389P389LcCtcTt44B.1.1.330.001684
ORF1ab/nsp3389P389LcCtcTt44B.1.177.90.005326
ORF1ab/nsp3389P389LcCtcTt44B.1.466.20.001565
ORF1ab/nsp3389P389LcCtcTt44B.1.5440.024096
ORF1ab/nsp3389P389LcCtcTt33AY.230.000209
ORF1ab/nsp3389P389LcCtcTt33AY.270.000194
ORF1ab/nsp3389P389LcCtcTt33AY.290.000047
ORF1ab/nsp3389P389LcCtcTt33AY.390.000074
ORF1ab/nsp3389P389LcCtcTt33B.1.1.2030.050847
ORF1ab/nsp3389P389LcCtcTt33B.1.36.350.007812
ORF1ab/nsp3389P389LcCtcTt33B.1.4700.004213
ORF1ab/nsp3389P389LcCtcTt33D.20.000225
ORF1ab/nsp3389P389LcCTcTC120.055556
ORF1ab/nsp3389P389LcCtcTt120.055556
ORF1ab/nsp3389P389LcCtcTt22A.2.50.000998
ORF1ab/nsp3389P389LcCtcTt22AY.1180.000125
ORF1ab/nsp3389P389LcCtcTt22AY.240.000862
ORF1ab/nsp3389P389LcCtcTt22AY.4.20.000043
ORF1ab/nsp3389P389LcCtcTt22AY.420.00008
ORF1ab/nsp3389P389LcCtcTt22AY.470.000062
ORF1ab/nsp3389P389LcCtcTt22AY.540.000191
ORF1ab/nsp3389P389LcCtcTt22AY.670.000929
ORF1ab/nsp3389P389LcCtcTt22AY.740.000231
ORF1ab/nsp3389P389LcCtcTt22B.1.1.1630.015267
ORF1ab/nsp3389P389LcCtcTt22B.1.1.2370.010811
ORF1ab/nsp3389P389LcCtcTt22B.1.1.280.000622
ORF1ab/nsp3389P389LcCtcTt22B.1.1.370.000386
ORF1ab/nsp3389P389LcCtcTt22B.1.1.3970.004505
ORF1ab/nsp3389P389LcCtcTt22B.1.1.5190.000079
ORF1ab/nsp3389P389LcCtcTt22B.1.2140.007326
ORF1ab/nsp3389P389LcCtcTt22B.1.3110.000549
ORF1ab/nsp3389P389LcCtcTt22B.1.351.20.000605
ORF1ab/nsp3389P389LcCtcTt22B.1.5250.000226
ORF1ab/nsp3389P389LcCtcTt22B.1.5650.001621
ORF1ab/nsp3389P389LcCtcTt22B.1.6090.000959
ORF1ab/nsp3389P389LcCtcTt22B.1.617.10.000258
ORF1ab/nsp3389P389LcCtcTt22P.1.150.000465
ORF1ab/nsp3389P389LcCtcTt11A.20.000662
ORF1ab/nsp3389P389LcCtcTt11A.2.5.20.001572
ORF1ab/nsp3389P389LcCtcTt11A.210.00277
ORF1ab/nsp3389P389LcCtcTt11AY.100.00053
ORF1ab/nsp3389P389LcCtcTt11AY.1040.001984
ORF1ab/nsp3389P389LcCtcTt11AY.16.10.00047
ORF1ab/nsp3389P389LcCtcTt11AY.200.000039
ORF1ab/nsp3389P389LcCtcTt11AY.210.001898
ORF1ab/nsp3389P389LcCtcTt11AY.300.000396
ORF1ab/nsp3389P389LcCtcTt11AY.370.000316
ORF1ab/nsp3389P389LcCtcTt11AY.39.10.00004
ORF1ab/nsp3389P389LcCtcTt11AY.4.40.000409
ORF1ab/nsp3389P389LcCtcTt11AY.400.000964
ORF1ab/nsp3389P389LcCtcTt11AY.480.000465
ORF1ab/nsp3389P389LcCtcTt11AY.500.000799
ORF1ab/nsp3389P389LcCtcTt11AY.530.000288
ORF1ab/nsp3389P389LcCtcTt11AY.590.00053
ORF1ab/nsp3389P389LcCtcTt11AY.610.000105
ORF1ab/nsp3389P389LcCtcTt11AY.650.000533
ORF1ab/nsp3389P389LcCtcTt11AY.7.10.000113
ORF1ab/nsp3389P389LcCtcTt11AY.730.000665
ORF1ab/nsp3389P389LcCtcTt11AY.80.000606
ORF1ab/nsp3389P389LcCtcTt11AY.810.001992
ORF1ab/nsp3389P389LcCtcTt11AY.840.000437
ORF1ab/nsp3389P389LcCtcTt11AY.980.000079
ORF1ab/nsp3389P389LcCtcTt11AY.98.10.000048
ORF1ab/nsp3389P389LcCtcTt11B0.000128
ORF1ab/nsp3389P389LcCtcTt11B.1.1.1410.002012
ORF1ab/nsp3389P389LcCtcTt11B.1.1.1870.00885
ORF1ab/nsp3389P389LcCtcTt11B.1.1.1890.001513
ORF1ab/nsp3389P389LcCtcTt11B.1.1.2160.00089
ORF1ab/nsp3389P389LcCtcTt11B.1.1.250.000569
ORF1ab/nsp3389P389LcCtcTt11B.1.1.2790.001121
ORF1ab/nsp3389P389LcCtcTt11B.1.1.2840.000107
ORF1ab/nsp3389P389LcCtcTt11B.1.1.290.010309
ORF1ab/nsp3389P389LcCtcTt11B.1.1.3690.000446
ORF1ab/nsp3389P389LcCtcTt11B.1.1.4160.000905
ORF1ab/nsp3389P389LcCtcTt11B.1.1.4820.023256
ORF1ab/nsp3389P389LcCtcTt11B.1.1.5240.020833
ORF1ab/nsp3389P389LcCtcTt11B.1.110.30.000718
ORF1ab/nsp3389P389LcCtcTt11B.1.1110.001175
ORF1ab/nsp3389P389LcCtcTt11B.1.1390.000733
ORF1ab/nsp3389P389LcCtcTt11B.1.177.600.000218
ORF1ab/nsp3389P389LcCtcTt11B.1.177.870.000728
ORF1ab/nsp3389P389LcCtcTt11B.1.220.001318
ORF1ab/nsp3389P389LcCtcTt11B.1.2360.002053
ORF1ab/nsp3389P389LcCtcTt11B.1.2430.00007
ORF1ab/nsp3389P389LcCtcTt11B.1.3200.001245
ORF1ab/nsp3389P389LcCtcTt11B.1.3490.000715
ORF1ab/nsp3389P389LcCtcTt11B.1.36.10.00114
ORF1ab/nsp3389P389LcCtcTt11B.1.3690.000285
ORF1ab/nsp3389P389LcCTcTA11B.1.3770.004566
ORF1ab/nsp3389P389LcCtcTt11B.1.4260.001009
ORF1ab/nsp3389P389LcCtcTt11B.1.4970.000315
ORF1ab/nsp3389P389LcCtcTt11B.1.5760.000907
ORF1ab/nsp3389P389LcCtcTt11B.1.6210.000089
ORF1ab/nsp3389P389LcCtcTt11B.280.003279
ORF1ab/nsp3389P389LcCtcTt11C.370.000116
ORF1ab/nsp3389P389LcCtcTt11N.40.004255
ORF1ab/nsp3389P389LcCtcTt11P.1.70.000319
ORF1ab/nsp3389P389LcCtcTt11P.60.003145
ORF1ab/nsp3389P389LcCtcTt11Q.80.000165
ORF1ab/nsp3389P389LcCtcTt11R.10.00009
ORF1ab/nsp3389P389LcCtcTt11Z.10.00289