CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = P340L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp3340P340LP1158LnonsyncCtcTt838683800.9992853737-3739
ORF1ab/nsp3340P340LP1158LnonsyncCTcTC838630.0003577393737-3739
ORF1ab/nsp3340P340LP1158LnonsyncCTcTG838620.0002384933737-3739
ORF1ab/nsp3340P340LP1158LnonsyncCTcTA838610.0001192463737-3739

Details of the mutation P340L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp3340P340LcCtcTt83808386All0.001603
ORF1ab/nsp3340P340LcCTcTC38386All0.000001
ORF1ab/nsp3340P340LcCTcTG28386All0
ORF1ab/nsp3340P340LcCTcTA18386All0
ORF1ab/nsp3340P340LcCtcTt767767B.1.1.390.390928
ORF1ab/nsp3340P340LcCtcTt763763B.1.5510.984516
ORF1ab/nsp3340P340LcCtcTt738739B.1.617.20.002779
ORF1ab/nsp3340P340LcCTcTC1739B.1.617.20.000004
ORF1ab/nsp3340P340LcCtcTt705705B.1.1.70.000631
ORF1ab/nsp3340P340LcCtcTt654654B.1.20.005759
ORF1ab/nsp3340P340LcCtcTt588588AY.1020.01559
ORF1ab/nsp3340P340LcCtcTt575575B.1.1.2840.061755
ORF1ab/nsp3340P340LcCtcTt435435AY.40.000677
ORF1ab/nsp3340P340LcCtcTt321321B.1.4270.01621
ORF1ab/nsp3340P340LcCtcTt160160B.10.001466
ORF1ab/nsp3340P340LcCtcTt155155AY.290.002445
ORF1ab/nsp3340P340LcCtcTt143143AY.250.00086
ORF1ab/nsp3340P340LcCtcTt131131AY.1030.000813
ORF1ab/nsp3340P340LcCtcTt9393AY.430.000412
ORF1ab/nsp3340P340LcCtcTt9393AY.930.025396
ORF1ab/nsp3340P340LcCtcTt9191AY.390.002249
ORF1ab/nsp3340P340LcCtcTt8282R.10.007381
ORF1ab/nsp3340P340LcCtcTt8181B.1.1770.001067
ORF1ab/nsp3340P340LcCtcTt7676D.20.005703
ORF1ab/nsp3340P340LcCtcTt7575B.1.1.2770.056904
ORF1ab/nsp3340P340LcCtcTt7272B.1.4290.001694
ORF1ab/nsp3340P340LcCtcTt7171AY.260.00201
ORF1ab/nsp3340P340LcCtcTt7171AY.440.000432
ORF1ab/nsp3340P340LcCtcTt6464B.1.1.500.043449
ORF1ab/nsp3340P340LcCtcTt5757B.1.1.3340.934426
ORF1ab/nsp3340P340LcCtcTt4848B.1.3490.03431
ORF1ab/nsp3340P340LcCtcTt4747B.1.5820.023062
ORF1ab/nsp3340P340LcCtcTt4646B.1.10.000834
ORF1ab/nsp3340P340LcCtcTt4545AY.470.0014
ORF1ab/nsp3340P340LcCtcTt4040AY.30.000398
ORF1ab/nsp3340P340LcCtcTt4040B.1.1600.001248
ORF1ab/nsp3340P340LcCtcTt3838B.1.177.210.002906
ORF1ab/nsp3340P340LcCtcTt3131AY.4.20.000672
ORF1ab/nsp3340P340LcCtcTt3030AY.450.003651
ORF1ab/nsp3340P340LcCtcTt2727B.1.1.370.005207
ORF1ab/nsp3340P340LcCtcTt2727B.1.2580.001797
ORF1ab/nsp3340P340LcCtcTt2525AY.540.002384
ORF1ab/nsp3340P340LcCtcTt2225P.10.000347
ORF1ab/nsp3340P340LcCTcTG225P.10.000032
ORF1ab/nsp3340P340LcCTcTA125P.10.000016
ORF1ab/nsp3340P340LcCtcTt2323B.1.2210.001634
ORF1ab/nsp3340P340LcCtcTt2222AY.1190.000777
ORF1ab/nsp3340P340LcCtcTt2222AY.460.00229
ORF1ab/nsp3340P340LcCtcTt2020B.1.5750.006068
ORF1ab/nsp3340P340LcCtcTt2020Q.30.002901
ORF1ab/nsp3340P340LcCtcTt1919B.1.1.3690.008478
ORF1ab/nsp3340P340LcCtcTt1919B.1.1.5190.000755
ORF1ab/nsp3340P340LcCtcTt1717AY.320.009052
ORF1ab/nsp3340P340LcCtcTt1515AY.1170.001268
ORF1ab/nsp3340P340LcCtcTt1515AY.34.10.007649
ORF1ab/nsp3340P340LcCtcTt1515B0.001917
ORF1ab/nsp3340P340LcCtcTt1515B.1.177.820.00716
ORF1ab/nsp3340P340LcCtcTt1414AY.190.015964
ORF1ab/nsp3340P340LcCtcTt1414AY.60.000576
ORF1ab/nsp3340P340LcCtcTt1313AY.1050.00836
ORF1ab/nsp3340P340LcCtcTt1212AY.5.30.004049
ORF1ab/nsp3340P340LcCtcTt1212B.1.1.2140.000665
ORF1ab/nsp3340P340LcCtcTt1111AY.1100.00124
ORF1ab/nsp3340P340LcCtcTt1111AY.90.000744
ORF1ab/nsp3340P340LcCtcTt1010B.1.1.2310.03096
ORF1ab/nsp3340P340LcCtcTt1010B.1.1.5260.035461
ORF1ab/nsp3340P340LcCtcTt1010B.1.3360.02439
ORF1ab/nsp3340P340LcCtcTt1010B.1.5230.02451
ORF1ab/nsp3340P340LcCtcTt1010P.20.001866
ORF1ab/nsp3340P340LcCtcTt99AY.330.000601
ORF1ab/nsp3340P340LcCtcTt99B.1.5260.000212
ORF1ab/nsp3340P340LcCtcTt88AY.1180.000501
ORF1ab/nsp3340P340LcCtcTt88AY.1200.000297
ORF1ab/nsp3340P340LcCtcTt88B.1.1.1350.037559
ORF1ab/nsp3340P340LcCtcTt88B.1.2430.000557
ORF1ab/nsp3340P340LcCtcTt88B.1.360.001167
ORF1ab/nsp3340P340LcCtcTt88B.1.6210.000708
ORF1ab/nsp3340P340LcCtcTt77AY.1000.000322
ORF1ab/nsp3340P340LcCtcTt77AY.116.10.00218
ORF1ab/nsp3340P340LcCtcTt77AY.200.000272
ORF1ab/nsp3340P340LcCtcTt77AY.50.000145
ORF1ab/nsp3340P340LcCtcTt77AY.550.006422
ORF1ab/nsp3340P340LcCtcTt77AY.980.000553
ORF1ab/nsp3340P340LcCtcTt77AY.98.10.000339
ORF1ab/nsp3340P340LcCtcTt77P.1.140.000335
ORF1ab/nsp3340P340LcCtcTt66AY.1130.000854
ORF1ab/nsp3340P340LcCtcTt66AY.610.000629
ORF1ab/nsp3340P340LcCtcTt66AY.7.10.000676
ORF1ab/nsp3340P340LcCtcTt66AY.720.008163
ORF1ab/nsp3340P340LcCtcTt66B.1.3510.000178
ORF1ab/nsp3340P340LcCtcTt66B.1.5640.002555
ORF1ab/nsp3340P340LcCtcTt66B.1.5760.00544
ORF1ab/nsp3340P340LcCtcTt66Q.10.000758
ORF1ab/nsp3340P340LcCtcTt350.166667
ORF1ab/nsp3340P340LcCTcTC250.111111
ORF1ab/nsp3340P340LcCtcTt55AY.340.000485
ORF1ab/nsp3340P340LcCtcTt55AY.46.60.000361
ORF1ab/nsp3340P340LcCtcTt55B.1.1.1280.035461
ORF1ab/nsp3340P340LcCtcTt55B.1.214.20.002998
ORF1ab/nsp3340P340LcCtcTt55B.1.2340.00066
ORF1ab/nsp3340P340LcCtcTt55B.1.36.290.002587
ORF1ab/nsp3340P340LcCtcTt55B.1.5090.004329
ORF1ab/nsp3340P340LcCtcTt55B.1.5880.00455
ORF1ab/nsp3340P340LcCtcTt55B.1.5960.000436
ORF1ab/nsp3340P340LcCtcTt55B.1.5970.023148
ORF1ab/nsp3340P340LcCtcTt55B.1.617.10.000645
ORF1ab/nsp3340P340LcCtcTt44AY.270.000259
ORF1ab/nsp3340P340LcCtcTt44AY.4.2.10.000596
ORF1ab/nsp3340P340LcCtcTt44AY.420.000161
ORF1ab/nsp3340P340LcCtcTt44AY.650.002132
ORF1ab/nsp3340P340LcCtcTt44AY.750.000224
ORF1ab/nsp3340P340LcCtcTt44AY.950.003044
ORF1ab/nsp3340P340LcCtcTt44B.1.1.2070.004728
ORF1ab/nsp3340P340LcCtcTt44B.1.177.440.002076
ORF1ab/nsp3340P340LcCtcTt44B.1.3980.011905
ORF1ab/nsp3340P340LcCtcTt44C.180.010363
ORF1ab/nsp3340P340LcCtcTt33AT.10.015385
ORF1ab/nsp3340P340LcCtcTt33AY.1210.000406
ORF1ab/nsp3340P340LcCtcTt33AY.230.000209
ORF1ab/nsp3340P340LcCtcTt33AY.4.40.001227
ORF1ab/nsp3340P340LcCtcTt33AY.4.50.000322
ORF1ab/nsp3340P340LcCtcTt33AY.730.001996
ORF1ab/nsp3340P340LcCtcTt33AY.740.000347
ORF1ab/nsp3340P340LcCtcTt33AY.790.003632
ORF1ab/nsp3340P340LcCtcTt33AY.9.20.00011
ORF1ab/nsp3340P340LcCtcTt33AY.99.20.000276
ORF1ab/nsp3340P340LcCtcTt33B.1.1.10.00098
ORF1ab/nsp3340P340LcCtcTt33B.1.1.250.001706
ORF1ab/nsp3340P340LcCtcTt33B.1.160.160.002788
ORF1ab/nsp3340P340LcCtcTt33B.1.160.320.012876
ORF1ab/nsp3340P340LcCtcTt33B.1.2320.001612
ORF1ab/nsp3340P340LcCtcTt33B.1.3690.000856
ORF1ab/nsp3340P340LcCtcTt33B.1.3960.002117
ORF1ab/nsp3340P340LcCtcTt33B.1.5950.000783
ORF1ab/nsp3340P340LcCtcTt33B.1.6180.012097
ORF1ab/nsp3340P340LcCtcTt33B.1.6230.001609
ORF1ab/nsp3340P340LcCtcTt33B.1.6370.000219
ORF1ab/nsp3340P340LcCtcTt33Q.80.000495
ORF1ab/nsp3340P340LcCtcTt22AL.10.025974
ORF1ab/nsp3340P340LcCtcTt22AY.1040.003968
ORF1ab/nsp3340P340LcCtcTt22AY.1060.00067
ORF1ab/nsp3340P340LcCtcTt22AY.1110.000366
ORF1ab/nsp3340P340LcCtcTt22AY.1140.000462
ORF1ab/nsp3340P340LcCtcTt22AY.1160.000574
ORF1ab/nsp3340P340LcCtcTt22AY.160.000759
ORF1ab/nsp3340P340LcCtcTt22AY.180.020202
ORF1ab/nsp3340P340LcCtcTt22AY.370.000632
ORF1ab/nsp3340P340LcCtcTt22AY.39.10.000079
ORF1ab/nsp3340P340LcCtcTt22AY.46.10.002053
ORF1ab/nsp3340P340LcCtcTt22AY.46.20.001271
ORF1ab/nsp3340P340LcCtcTt22AY.46.30.001867
ORF1ab/nsp3340P340LcCtcTt22AY.890.009804
ORF1ab/nsp3340P340LcCtcTt22AY.920.000575
ORF1ab/nsp3340P340LcCtcTt22B.1.1.1700.002494
ORF1ab/nsp3340P340LcCtcTt22B.1.1.3180.000604
ORF1ab/nsp3340P340LcCtcTt22B.1.1.330.000842
ORF1ab/nsp3340P340LcCtcTt22B.1.1.3720.001377
ORF1ab/nsp3340P340LcCtcTt22B.1.110.30.001437
ORF1ab/nsp3340P340LcCtcTt22B.1.160.120.012821
ORF1ab/nsp3340P340LcCtcTt22B.1.177.230.006472
ORF1ab/nsp3340P340LcCtcTt22B.1.177.430.002954
ORF1ab/nsp3340P340LcCtcTt22B.1.177.520.003515
ORF1ab/nsp3340P340LcCtcTt22B.1.177.810.000379
ORF1ab/nsp3340P340LcCtcTt22B.1.177.860.000367
ORF1ab/nsp3340P340LcCtcTt22B.1.177.870.001456
ORF1ab/nsp3340P340LcCtcTt22B.1.258.140.001961
ORF1ab/nsp3340P340LcCtcTt22B.1.3230.041667
ORF1ab/nsp3340P340LcCtcTt22B.1.36.180.00084
ORF1ab/nsp3340P340LcCtcTt22B.1.3670.001585
ORF1ab/nsp3340P340LcCtcTt22B.1.3990.003868
ORF1ab/nsp3340P340LcCtcTt22B.1.4000.000858
ORF1ab/nsp3340P340LcCtcTt22B.1.4040.002604
ORF1ab/nsp3340P340LcCtcTt22B.1.930.001867
ORF1ab/nsp3340P340LcCtcTt22B.4.70.020202
ORF1ab/nsp3340P340LcCtcTt22C.360.001821
ORF1ab/nsp3340P340LcCtcTt22C.36.30.001134
ORF1ab/nsp3340P340LcCtcTt22C.370.000232
ORF1ab/nsp3340P340LcCtcTt11AD.20.000219
ORF1ab/nsp3340P340LcCtcTt11AE.80.000489
ORF1ab/nsp3340P340LcCtcTt11AF.10.037037
ORF1ab/nsp3340P340LcCtcTt11AY.1080.001103
ORF1ab/nsp3340P340LcCtcTt11AY.120.000316
ORF1ab/nsp3340P340LcCtcTt11AY.240.000431
ORF1ab/nsp3340P340LcCtcTt11AY.29.10.000221
ORF1ab/nsp3340P340LcCtcTt11AY.380.000499
ORF1ab/nsp3340P340LcCtcTt11AY.400.000964
ORF1ab/nsp3340P340LcCtcTt11AY.46.40.000165
ORF1ab/nsp3340P340LcCtcTt11AY.480.000465
ORF1ab/nsp3340P340LcCtcTt11AY.580.000907
ORF1ab/nsp3340P340LcCtcTt11AY.70.000196
ORF1ab/nsp3340P340LcCtcTt11AY.75.10.00018
ORF1ab/nsp3340P340LcCtcTt11AY.780.001541
ORF1ab/nsp3340P340LcCtcTt11AY.840.000437
ORF1ab/nsp3340P340LcCtcTt11AY.850.000427
ORF1ab/nsp3340P340LcCtcTt11AY.860.00083
ORF1ab/nsp3340P340LcCtcTt11AY.880.000884
ORF1ab/nsp3340P340LcCtcTt11AY.900.000684
ORF1ab/nsp3340P340LcCtcTt11B.1.1.100.001115
ORF1ab/nsp3340P340LcCtcTt11B.1.1.1610.003534
ORF1ab/nsp3340P340LcCtcTt11B.1.1.1890.001513
ORF1ab/nsp3340P340LcCtcTt11B.1.1.2160.00089
ORF1ab/nsp3340P340LcCtcTt11B.1.1.270.00565
ORF1ab/nsp3340P340LcCtcTt11B.1.1.2820.011628
ORF1ab/nsp3340P340LcCtcTt11B.1.1.2940.001266
ORF1ab/nsp3340P340LcCtcTt11B.1.1.2980.000862
ORF1ab/nsp3340P340LcCtcTt11B.1.1.3050.003861
ORF1ab/nsp3340P340LcCtcTt11B.1.1.3160.000925
ORF1ab/nsp3340P340LcCtcTt11B.1.1.3170.000412
ORF1ab/nsp3340P340LcCtcTt11B.1.1.3260.001761
ORF1ab/nsp3340P340LcCtcTt11B.1.1.3480.000796
ORF1ab/nsp3340P340LcCtcTt11B.1.1.3800.009804
ORF1ab/nsp3340P340LcCtcTt11B.1.1.4070.041667
ORF1ab/nsp3340P340LcCtcTt11B.1.1.4320.001266
ORF1ab/nsp3340P340LcCtcTt11B.1.1.4420.018519
ORF1ab/nsp3340P340LcCtcTt11B.1.1.450.014085
ORF1ab/nsp3340P340LcCtcTt11B.1.1.4640.001473
ORF1ab/nsp3340P340LcCtcTt11B.1.1.5210.005348
ORF1ab/nsp3340P340LcCtcTt11B.1.1.5230.001563
ORF1ab/nsp3340P340LcCtcTt11B.1.1110.001175
ORF1ab/nsp3340P340LcCtcTt11B.1.1460.004237
ORF1ab/nsp3340P340LcCtcTt11B.1.1580.02381
ORF1ab/nsp3340P340LcCtcTt11B.1.160.110.005714
ORF1ab/nsp3340P340LcCtcTt11B.1.177.180.00116
ORF1ab/nsp3340P340LcCtcTt11B.1.177.40.000211
ORF1ab/nsp3340P340LcCtcTt11B.1.177.560.000668
ORF1ab/nsp3340P340LcCtcTt11B.1.177.620.001192
ORF1ab/nsp3340P340LcCtcTt11B.1.2100.002132
ORF1ab/nsp3340P340LcCtcTt11B.1.2220.001692
ORF1ab/nsp3340P340LcCtcTt11B.1.2390.001221
ORF1ab/nsp3340P340LcCtcTt11B.1.2400.000216
ORF1ab/nsp3340P340LcCtcTt11B.1.258.110.000396
ORF1ab/nsp3340P340LcCtcTt11B.1.258.170.000104
ORF1ab/nsp3340P340LcCtcTt11B.1.258.30.001675
ORF1ab/nsp3340P340LcCtcTt11B.1.258.70.001912
ORF1ab/nsp3340P340LcCtcTt11B.1.3110.000275
ORF1ab/nsp3340P340LcCtcTt11B.1.3320.003497
ORF1ab/nsp3340P340LcCtcTt11B.1.3800.006623
ORF1ab/nsp3340P340LcCtcTt11B.1.3890.001002
ORF1ab/nsp3340P340LcCtcTt11B.1.4090.000781
ORF1ab/nsp3340P340LcCtcTt11B.1.4220.000812
ORF1ab/nsp3340P340LcCtcTt11B.1.4560.003268
ORF1ab/nsp3340P340LcCtcTt11B.1.4680.005714
ORF1ab/nsp3340P340LcCtcTt11B.1.4700.001404
ORF1ab/nsp3340P340LcCtcTt11B.1.4730.019231
ORF1ab/nsp3340P340LcCtcTt11B.1.4970.000315
ORF1ab/nsp3340P340LcCtcTt11B.1.4990.00105
ORF1ab/nsp3340P340LcCtcTt11B.1.5250.000113
ORF1ab/nsp3340P340LcCtcTt11B.1.5770.000687
ORF1ab/nsp3340P340LcCtcTt11B.1.6090.000479
ORF1ab/nsp3340P340LcCtcTt11B.1.6280.000352
ORF1ab/nsp3340P340LcCtcTt11B.400.000364
ORF1ab/nsp3340P340LcCtcTt11B.60.00091
ORF1ab/nsp3340P340LcCtcTt11B.6.60.000889
ORF1ab/nsp3340P340LcCtcTt11B.610.005747
ORF1ab/nsp3340P340LcCtcTt11C.20.016129
ORF1ab/nsp3340P340LcCtcTt11C.350.000774
ORF1ab/nsp3340P340LcCtcTt11C.36.10.004149
ORF1ab/nsp3340P340LcCtcTt11P.1.100.000269
ORF1ab/nsp3340P340LcCtcTt11P.30.001595