CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = P1787P

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31787P1787PP2605PsynccAccT4441910.430188078-8080
ORF1ab/nsp31787P1787PP2605PsynccAccG4441540.3468478078-8080
ORF1ab/nsp31787P1787PP2605PsynccAccC444990.2229738078-8080

Details of the mutation P1787P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31787P1787PccAccT191444All0.000037
ORF1ab/nsp31787P1787PccAccG154444All0.000029
ORF1ab/nsp31787P1787PccAccC99444All0.000019
ORF1ab/nsp31787P1787PccAccC89140B.1.1.70.00008
ORF1ab/nsp31787P1787PccAccT37140B.1.1.70.000033
ORF1ab/nsp31787P1787PccAccG14140B.1.1.70.000013
ORF1ab/nsp31787P1787PccAccT103103B.1.177.781
ORF1ab/nsp31787P1787PccAccG4849B.1.4290.001129
ORF1ab/nsp31787P1787PccAccC149B.1.4290.000024
ORF1ab/nsp31787P1787PccAccG3030AY.460.003122
ORF1ab/nsp31787P1787PccAccG1118AY.40.000017
ORF1ab/nsp31787P1787PccAccT718AY.40.000011
ORF1ab/nsp31787P1787PccAccG810AY.430.000035
ORF1ab/nsp31787P1787PccAccT210AY.430.000009
ORF1ab/nsp31787P1787PccAccG49AY.440.000024
ORF1ab/nsp31787P1787PccAccT39AY.440.000018
ORF1ab/nsp31787P1787PccAccC29AY.440.000012
ORF1ab/nsp31787P1787PccAccT99B.1.2210.000639
ORF1ab/nsp31787P1787PccAccG58B.1.617.20.000019
ORF1ab/nsp31787P1787PccAccT38B.1.617.20.000011
ORF1ab/nsp31787P1787PccAccT55AY.1000.00023
ORF1ab/nsp31787P1787PccAccG55AY.46.50.000992
ORF1ab/nsp31787P1787PccAccG44AY.420.000161
ORF1ab/nsp31787P1787PccAccC44B.1.1990.016529
ORF1ab/nsp31787P1787PccAccG44B.1.3510.000119
ORF1ab/nsp31787P1787PccAccT33AY.250.000018
ORF1ab/nsp31787P1787PccAccT33B.6.60.002667
ORF1ab/nsp31787P1787PccAccG22AY.390.000049
ORF1ab/nsp31787P1787PccAccT22AY.9.20.000073
ORF1ab/nsp31787P1787PccAccT12B.10.000009
ORF1ab/nsp31787P1787PccAccG12B.10.000009
ORF1ab/nsp31787P1787PccAccG22B.1.10.000036
ORF1ab/nsp31787P1787PccAccG22B.1.1.2220.000408
ORF1ab/nsp31787P1787PccAccT22B.1.1.700.000682
ORF1ab/nsp31787P1787PccAccT22B.1.1770.000026
ORF1ab/nsp31787P1787PccAccG22B.1.177.50.002484
ORF1ab/nsp31787P1787PccAccG12B.1.5960.000087
ORF1ab/nsp31787P1787PccAccT12B.1.5960.000087
ORF1ab/nsp31787P1787PccAccT12B.1.6280.000352
ORF1ab/nsp31787P1787PccAccG12B.1.6280.000352
ORF1ab/nsp31787P1787PccAccG22N.60.014184
ORF1ab/nsp31787P1787PccAccG12P.10.000016
ORF1ab/nsp31787P1787PccAccT12P.10.000016
ORF1ab/nsp31787P1787PccAccG11AY.1030.000006
ORF1ab/nsp31787P1787PccAccG11AY.1190.000035
ORF1ab/nsp31787P1787PccAccG11AY.120.20.001285
ORF1ab/nsp31787P1787PccAccT11AY.260.000028
ORF1ab/nsp31787P1787PccAccT11AY.290.000016
ORF1ab/nsp31787P1787PccAccC11AY.4.40.000409
ORF1ab/nsp31787P1787PccAccT11AY.450.000122
ORF1ab/nsp31787P1787PccAccC11AY.46.60.000072
ORF1ab/nsp31787P1787PccAccG11AY.740.000116
ORF1ab/nsp31787P1787PccAccT11AY.750.000056
ORF1ab/nsp31787P1787PccAccG11AY.980.000079
ORF1ab/nsp31787P1787PccAccG11B.1.1600.000031
ORF1ab/nsp31787P1787PccAccT11B.1.1890.004292
ORF1ab/nsp31787P1787PccAccT11B.1.20.000009
ORF1ab/nsp31787P1787PccAccC11B.1.3380.008621
ORF1ab/nsp31787P1787PccAccG11B.1.5680.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.