CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = P1469T

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31469P1469TP2287TnonsynCctAct5945910.994957124-7126
ORF1ab/nsp31469P1469TP2287TnonsynCcTAcG59420.0033677124-7126
ORF1ab/nsp31469P1469TP2287TnonsynCcTAcA59410.00168357124-7126

Details of the mutation P1469T within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31469P1469TCctAct591594All0.000113
ORF1ab/nsp31469P1469TCcTAcG2594All0
ORF1ab/nsp31469P1469TCcTAcA1594All0
ORF1ab/nsp31469P1469TCctAct563563B.1.1.70.000504
ORF1ab/nsp31469P1469TCctAct55B.1.1.2220.00102
ORF1ab/nsp31469P1469TCctAct33B.1.177.810.000568
ORF1ab/nsp31469P1469TCctAct33B.1.20.000026
ORF1ab/nsp31469P1469TCctAct22AY.600.001876
ORF1ab/nsp31469P1469TCctAct22B.10.000018
ORF1ab/nsp31469P1469TCctAct22B.1.1770.000026
ORF1ab/nsp31469P1469TCcTAcG22P.10.000032
ORF1ab/nsp31469P1469TCctAct110.055556
ORF1ab/nsp31469P1469TCctAct11AY.1130.000142
ORF1ab/nsp31469P1469TCctAct11AY.46.20.000635
ORF1ab/nsp31469P1469TCctAct11AY.690.000187
ORF1ab/nsp31469P1469TCctAct11AY.850.000427
ORF1ab/nsp31469P1469TCctAct11B.1.10.000018
ORF1ab/nsp31469P1469TCctAct11B.1.1.720.030303
ORF1ab/nsp31469P1469TCctAct11B.1.1600.000031
ORF1ab/nsp31469P1469TCctAct11B.1.3510.00003
ORF1ab/nsp31469P1469TCctAct11B.1.36.290.000517
ORF1ab/nsp31469P1469TCcTAcA11B.1.617.20.000004
ORF1ab/nsp31469P1469TCctAct11P.20.000187