CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1469 | P1469S | P2287S | nonsyn | Cct | Tct | 2365029 | 2364296 | 0.99969 | 7124-7126 |
ORF1ab/nsp3 | 1469 | P1469S | P2287S | nonsyn | CcT | TcG | 2365029 | 567 | 0.000239743 | 7124-7126 |
ORF1ab/nsp3 | 1469 | P1469S | P2287S | nonsyn | CcT | TcC | 2365029 | 164 | 0.0000693438 | 7124-7126 |
ORF1ab/nsp3 | 1469 | P1469S | P2287S | nonsyn | CcT | TcA | 2365029 | 2 | 0.000000845656 | 7124-7126 |
Details of the mutation P1469S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 2364296 | 2365029 | All | 0.4522 |
ORF1ab/nsp3 | 1469 | P1469S | CcT | TcG | 567 | 2365029 | All | 0.000108 |
ORF1ab/nsp3 | 1469 | P1469S | CcT | TcC | 164 | 2365029 | All | 0.000031 |
ORF1ab/nsp3 | 1469 | P1469S | CcT | TcA | 2 | 2365029 | All | 0 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 633051 | 633589 | AY.4 | 0.985295 |
ORF1ab/nsp3 | 1469 | P1469S | CcT | TcG | 501 | 633589 | AY.4 | 0.00078 |
ORF1ab/nsp3 | 1469 | P1469S | CcT | TcC | 36 | 633589 | AY.4 | 0.000056 |
ORF1ab/nsp3 | 1469 | P1469S | CcT | TcA | 1 | 633589 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 221325 | 221435 | B.1.617.2 | 0.83338 |
ORF1ab/nsp3 | 1469 | P1469S | CcT | TcC | 91 | 221435 | B.1.617.2 | 0.000343 |
ORF1ab/nsp3 | 1469 | P1469S | CcT | TcG | 19 | 221435 | B.1.617.2 | 0.000072 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 212727 | 212745 | AY.43 | 0.942479 |
ORF1ab/nsp3 | 1469 | P1469S | CcT | TcG | 18 | 212745 | AY.43 | 0.00008 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 159884 | 159885 | AY.25 | 0.961674 |
ORF1ab/nsp3 | 1469 | P1469S | CcT | TcC | 1 | 159885 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 154504 | 154517 | AY.44 | 0.940429 |
ORF1ab/nsp3 | 1469 | P1469S | CcT | TcC | 11 | 154517 | AY.44 | 0.000067 |
ORF1ab/nsp3 | 1469 | P1469S | CcT | TcG | 2 | 154517 | AY.44 | 0.000012 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 153496 | 153497 | AY.103 | 0.953066 |
ORF1ab/nsp3 | 1469 | P1469S | CcT | TcC | 1 | 153497 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 96245 | 96246 | AY.3 | 0.95729 |
ORF1ab/nsp3 | 1469 | P1469S | CcT | TcC | 1 | 96246 | AY.3 | 0.00001 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 63353 | 63353 | AY.29 | 0.999306 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 47038 | 47038 | AY.5 | 0.971298 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 45645 | 45645 | AY.4.2 | 0.98998 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 36967 | 36976 | AY.102 | 0.980141 |
ORF1ab/nsp3 | 1469 | P1469S | CcT | TcG | 5 | 36976 | AY.102 | 0.000133 |
ORF1ab/nsp3 | 1469 | P1469S | CcT | TcC | 4 | 36976 | AY.102 | 0.000106 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 35890 | 35890 | AY.39 | 0.886895 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 27085 | 27086 | AY.119 | 0.956324 |
ORF1ab/nsp3 | 1469 | P1469S | CcT | TcC | 1 | 27086 | AY.119 | 0.000035 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 26476 | 26476 | AY.120 | 0.984348 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 24773 | 24773 | AY.39.1 | 0.981342 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 24642 | 24645 | AY.20 | 0.957715 |
ORF1ab/nsp3 | 1469 | P1469S | CcT | TcC | 3 | 24645 | AY.20 | 0.000117 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 23905 | 23905 | AY.6 | 0.983178 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 23807 | 23810 | AY.42 | 0.957758 |
ORF1ab/nsp3 | 1469 | P1469S | CcT | TcG | 3 | 23810 | AY.42 | 0.000121 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 20181 | 20181 | AY.100 | 0.92846 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 19904 | 19905 | AY.98.1 | 0.963967 |
ORF1ab/nsp3 | 1469 | P1469S | CcT | TcC | 1 | 19905 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 15237 | 15237 | AY.118 | 0.95458 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 14345 | 14349 | AY.33 | 0.95793 |
ORF1ab/nsp3 | 1469 | P1469S | CcT | TcC | 4 | 14349 | AY.33 | 0.000267 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 13628 | 13628 | AY.23 | 0.950548 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 13505 | 13505 | AY.46.6 | 0.975161 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 12190 | 12190 | AY.98 | 0.962951 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 11143 | 11143 | AY.3.1 | 0.950038 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 11132 | 11132 | AY.117 | 0.940838 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 10321 | 10321 | AY.99.2 | 0.951157 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 10007 | 10007 | AY.34 | 0.970329 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 9073 | 9073 | AY.4.5 | 0.975277 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 8728 | 8728 | AY.7.1 | 0.983658 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 8398 | 8415 | C.37 | 0.974698 |
ORF1ab/nsp3 | 1469 | P1469S | CcT | TcG | 17 | 8415 | C.37 | 0.001973 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 8307 | 8308 | AY.46 | 0.864592 |
ORF1ab/nsp3 | 1469 | P1469S | CcT | TcC | 1 | 8308 | AY.46 | 0.000104 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 6912 | 6913 | AY.45 | 0.841081 |
ORF1ab/nsp3 | 1469 | P1469S | CcT | TcC | 1 | 6913 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 6876 | 6876 | AY.121 | 0.930447 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 6581 | 6581 | AY.113 | 0.937064 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 6538 | 6539 | AY.4.2.1 | 0.974076 |
ORF1ab/nsp3 | 1469 | P1469S | CcT | TcG | 1 | 6539 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 6397 | 6397 | AY.36 | 0.948125 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 5928 | 5929 | AY.46.4 | 0.97516 |
ORF1ab/nsp3 | 1469 | P1469S | CcT | TcC | 1 | 5929 | AY.46.4 | 0.000165 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 5325 | 5325 | AY.111 | 0.975275 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 5025 | 5025 | AY.7 | 0.984908 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 5001 | 5001 | AY.46.5 | 0.992262 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 4529 | 4529 | AY.29.1 | 0.998677 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 4128 | 4128 | AY.114 | 0.95401 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 4014 | 4015 | AY.110 | 0.452333 |
ORF1ab/nsp3 | 1469 | P1469S | CcT | TcC | 1 | 4015 | AY.110 | 0.000113 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 3627 | 3627 | AY.93 | 0.990442 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 3419 | 3419 | AY.5.4 | 0.946043 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 3308 | 3309 | AY.41 | 0.972369 |
ORF1ab/nsp3 | 1469 | P1469S | CcT | TcC | 1 | 3309 | AY.41 | 0.000294 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 3292 | 3293 | AY.116 | 0.944078 |
ORF1ab/nsp3 | 1469 | P1469S | CcT | TcC | 1 | 3293 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 3091 | 3091 | AY.92 | 0.887963 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 3039 | 3039 | AY.116.1 | 0.946434 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 2981 | 2981 | AY.120.1 | 0.956982 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 2823 | 2823 | AY.106 | 0.945412 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 2731 | 2731 | AY.9.2 | 0.100309 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 2643 | 2643 | AY.5.3 | 0.8917 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 2396 | 2396 | AY.1 | 0.94816 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 2395 | 2395 | AY.23.1 | 0.999583 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 2383 | 2383 | AY.4.4 | 0.975041 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 2331 | 2331 | AY.12 | 0.736726 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 2242 | 2242 | AY.85 | 0.95771 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 2206 | 2206 | AY.94 | 0.976538 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 2134 | 2134 | AY.84 | 0.933508 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1963 | 1963 | AY.120.2.1 | 0.978077 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1942 | 1942 | AY.101 | 0.952428 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1888 | 1888 | AY.34.1 | 0.962774 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1821 | 1821 | AY.107 | 0.848555 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1755 | 1755 | AY.32 | 0.934505 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1737 | 1737 | AY.7.2 | 0.971477 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1685 | 1685 | C.36.3 | 0.955757 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1469 | 1469 | AY.46.2 | 0.933291 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1426 | 1426 | AY.90 | 0.976044 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1412 | 1412 | AY.105 | 0.908039 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1374 | 1374 | AY.39.1.1 | 0.995652 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1338 | 1338 | AY.4.1 | 0.986726 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1290 | 1290 | AY.109 | 0.954142 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1281 | 1281 | AY.91 | 0.93572 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1189 | 1189 | AY.95 | 0.904871 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1168 | 1168 | AY.4.3 | 0.983165 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1157 | 1157 | AY.87 | 0.963364 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1145 | 1145 | AY.86 | 0.950207 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1077 | 1077 | AY.88 | 0.952255 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1025 | 1025 | AY.46.3 | 0.957049 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 933 | 933 | AY.46.1 | 0.957906 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 873 | 873 | AY.99 | 0.916055 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 855 | 855 | AY.80 | 0.965011 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 805 | 807 | AY.79 | 0.974576 |
ORF1ab/nsp3 | 1469 | P1469S | CcT | TcC | 2 | 807 | AY.79 | 0.002421 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 806 | 806 | AY.77 | 0.908681 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 783 | 783 | AY.47 | 0.024355 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 778 | 778 | AY.75 | 0.043585 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 747 | 747 | AY.108 | 0.823594 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 684 | 684 | AY.120.2 | 0.879177 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 666 | 666 | AY.82 | 0.903664 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 647 | 647 | AY.39.2 | 0.996918 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 630 | 630 | AY.99.1 | 0.978261 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 608 | 609 | AY.73 | 0.404524 |
ORF1ab/nsp3 | 1469 | P1469S | CcT | TcG | 1 | 609 | AY.73 | 0.000665 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 607 | 607 | AY.78 | 0.935285 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 563 | 563 | AY.97 | 0.957483 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 548 | 548 | AY.83 | 0.944828 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 515 | 515 | C.36 | 0.469035 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 485 | 485 | AY.104 | 0.962302 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 465 | 465 | AY.21 | 0.882353 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 461 | 461 | AY.22 | 0.964435 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 461 | 461 | AY.81 | 0.918327 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 449 | 449 | AY.68 | 0.122913 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 445 | 445 | AY.55 | 0.408257 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 422 | 422 | AY.96 | 0.875519 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 397 | 397 | AY.5.2 | 0.977833 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 370 | 370 | AY.74 | 0.042789 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 360 | 360 | B.1 | 0.003297 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 358 | 358 | C.37.1 | 0.937173 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 331 | 331 | AY.54 | 0.03156 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 323 | 323 | C.36.3.1 | 0.877717 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 295 | 295 | AY.26 | 0.008351 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 270 | 270 | AY.19 | 0.307868 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 265 | 265 | AY.5.1 | 0.996241 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 253 | 253 | AY.58 | 0.229583 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 248 | 248 | AY.59 | 0.131356 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 242 | 242 | AY.75.1 | 0.043635 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 239 | 239 | AY.91.1 | 0.971545 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 231 | 231 | B.1.1.7 | 0.000207 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 222 | 222 | AY.53 | 0.06383 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 209 | 209 | P.7 | 0.912664 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 203 | 203 | AY.76 | 0.980676 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 202 | 202 | AY.89 | 0.990196 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 187 | 187 | B.1.1 | 0.003392 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 182 | 182 | AY.69 | 0.033974 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 159 | 159 | AY.115 | 0.828125 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 158 | 158 | AY.64 | 0.094048 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 154 | 154 | AY.10 | 0.081611 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 153 | 153 | AY.62 | 0.066667 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 149 | 149 | AY.37 | 0.047092 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 149 | 149 | AY.67 | 0.069174 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 141 | 141 | AY.52 | 0.114821 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 141 | 141 | AY.56 | 0.226324 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 131 | 131 | AY.16 | 0.049734 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 127 | 127 | AY.63 | 0.04913 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 101 | 101 | AY.57 | 0.066273 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 99 | 99 | AY.14 | 0.008713 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 95 | 95 | AY.13 | 0.015293 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 94 | 94 | AY.40 | 0.090646 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 85 | 85 | AY.38 | 0.042436 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 82 | 82 | AY.48 | 0.03814 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 77 | 77 | AY.35 | 0.017945 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 73 | 73 | AY.71 | 0.034679 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 61 | 61 | AY.60 | 0.057223 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 54 | 54 | B.1.2 | 0.000475 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 53 | 53 | AY.11 | 0.07095 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 50 | 50 | AY.65 | 0.026652 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 50 | 50 | AY.70 | 0.010425 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 37 | 37 | B | 0.004729 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 33 | 35 | P.1 | 0.00052 |
ORF1ab/nsp3 | 1469 | P1469S | CcT | TcC | 1 | 35 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1469 | P1469S | CcT | TcA | 1 | 35 | P.1 | 0.000016 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 33 | 34 | AY.50 | 0.026379 |
ORF1ab/nsp3 | 1469 | P1469S | CcT | TcC | 1 | 34 | AY.50 | 0.000799 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 33 | 33 | AY.24 | 0.014224 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 32 | 32 | AY.49 | 0.102236 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 31 | 31 | B.1.351 | 0.000922 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 30 | 30 | AY.9 | 0.002028 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 29 | 29 | AY.17 | 0.237705 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 28 | 28 | AY.61 | 0.002934 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 27 | 27 | B.1.177.87 | 0.019651 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 23 | 23 | B.1.596 | 0.002004 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 22 | 22 | AY.51 | 0.02 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 21 | 21 | AY.28 | 0.039698 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 21 | 21 | AY.30 | 0.00831 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 19 | 19 | B.1.1.70 | 0.00648 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 17 | 17 | P.1.15 | 0.00395 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 16 | 16 | AY.9.1 | 0.00134 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 14 | 14 | AY.16.1 | 0.006579 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 14 | 14 | AY.66 | 0.014973 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 13 | 13 | A | 0.005031 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 13 | 13 | AY.8 | 0.007879 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 12 | 12 | B.1.623 | 0.006438 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 11 | 11 | AY.72 | 0.014966 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 11 | 11 | B.1.361 | 0.014175 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 11 | 11 | B.1.617.1 | 0.001419 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 11 | 11 | B.1.621 | 0.000974 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 11 | 11 | C.39 | 0.207547 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 10 | 10 | B.1.1.294 | 0.012658 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 9 | 9 | AY.27 | 0.000582 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 9 | 9 | B.1.362 | 0.013867 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 9 | 9 | B.1.628 | 0.003171 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 8 | 8 | B.1.1.176 | 0.003515 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 8 | 8 | B.1.1.372 | 0.00551 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 8 | 8 | B.1.177 | 0.000105 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 8 | 8 | B.1.240 | 0.001725 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 8 | 8 | R.1 | 0.00072 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 7 | 7 | B.1.1.1 | 0.002287 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 7 | 7 | B.1.160 | 0.000218 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 6 | 6 | B.1.1.376 | 0.035714 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 6 | 6 | P.1.17 | 0.000971 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 5 | 5 | B.1.1.291 | 0.003712 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 5 | 5 | B.1.164 | 0.074627 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 5 | 5 | B.1.214 | 0.018315 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 5 | 5 | B.1.23 | 0.030303 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 5 | 5 | B.1.382 | 0.044643 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 5 | 5 | B.1.429 | 0.000118 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 5 | 5 | P.1.1 | 0.001588 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 4 | 4 | 0.222222 | |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 4 | 4 | AY.2 | 0.001425 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 4 | 4 | B.1.1.33 | 0.001684 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 4 | 4 | B.1.1.526 | 0.014184 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 4 | 4 | B.1.177.73 | 0.002265 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 4 | 4 | B.1.36.19 | 0.037037 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 4 | 4 | B.1.375 | 0.003279 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 4 | 4 | B.1.466.2 | 0.001565 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 4 | 4 | B.1.526 | 0.000094 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 4 | 4 | P.1.12 | 0.001936 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 3 | 3 | B.1.1.214 | 0.000166 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 3 | 3 | B.1.1.222 | 0.000612 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 3 | 3 | B.1.1.28 | 0.000934 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 3 | 3 | B.1.1.519 | 0.000119 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 3 | 3 | B.1.177.12 | 0.000455 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 3 | 3 | B.1.177.7 | 0.000495 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 3 | 3 | B.1.177.75 | 0.003122 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 3 | 3 | B.1.258 | 0.0002 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 3 | 3 | B.1.369 | 0.000856 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 3 | 3 | C.17 | 0.166667 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 3 | 3 | Q.3 | 0.000435 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 2 | 2 | AU.3 | 0.004219 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 2 | 2 | AY.15 | 0.004444 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 2 | 2 | B.1.1.161 | 0.007067 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 2 | 2 | B.1.1.528 | 0.009615 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 2 | 2 | B.1.1.72 | 0.060606 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 2 | 2 | B.1.143 | 0.042553 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 2 | 2 | B.1.160.26 | 0.004843 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 2 | 2 | B.1.177.86 | 0.000367 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 2 | 2 | B.1.335 | 0.020619 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 2 | 2 | B.1.416.1 | 0.003125 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 2 | 2 | B.1.474 | 0.003802 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 2 | 2 | B.1.524 | 0.002813 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 2 | 2 | B.1.554 | 0.008811 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 2 | 2 | B.1.595 | 0.000522 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 2 | 2 | B.1.630 | 0.010471 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 2 | 2 | B.1.635 | 0.035088 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 2 | 2 | B.1.81 | 0.042553 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 2 | 2 | C.35 | 0.001548 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 2 | 2 | D.2 | 0.00015 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 2 | 2 | P.1.13 | 0.001797 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 2 | 2 | P.1.7 | 0.000639 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 2 | 2 | P.2 | 0.000373 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | A.2.2 | 0.001689 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | A.2.5 | 0.000499 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | AY.18 | 0.010101 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | AY.31 | 0.018519 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | AZ.1 | 0.000867 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.1.10 | 0.001115 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.1.181 | 0.004545 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.1.254 | 0.011236 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.1.26 | 0.005236 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.1.301 | 0.001179 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.1.311 | 0.000358 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.1.318 | 0.000302 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.1.348 | 0.000796 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.1.409 | 0.002833 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.1.512 | 0.028571 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.1.514 | 0.038462 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.1.518 | 0.006329 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.1.53 | 0.013699 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.1.54 | 0.003021 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.142 | 0.002899 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.160.16 | 0.000929 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.218 | 0.005155 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.243 | 0.00007 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.258.11 | 0.000396 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.301 | 0.005917 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.311 | 0.000275 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.340 | 0.004292 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.380 | 0.006623 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.396 | 0.000706 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.428.3 | 0.012821 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.436 | 0.001029 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.485 | 0.014925 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.521 | 0.004975 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.539 | 0.017544 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.580 | 0.004065 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.582 | 0.000491 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.604 | 0.017241 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.609 | 0.000479 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.621.1 | 0.000506 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.631 | 0.003367 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.632 | 0.006711 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.1.637 | 0.000073 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | B.55 | 0.00295 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | C.14 | 0.004329 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | C.32 | 0.023256 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | P.1.14 | 0.000048 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1469 | P1469S | Cct | Tct | 1 | 1 | Q.7 | 0.001111 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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