CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = P1442del1

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31442P1442del1P2260del1delCct-ct1260.57043-7045
ORF1ab/nsp31442P1442del1P2260del1delccTcc-1250.4166677043-7045
ORF1ab/nsp31442P1442del1P2260del1delCcT-cC1210.08333337043-7045

Details of the mutation P1442del1 within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31442P1442del1Cct-ct612All0.000001
ORF1ab/nsp31442P1442del1ccTcc-512All0.000001
ORF1ab/nsp31442P1442del1CcT-cC112All0
ORF1ab/nsp31442P1442del1Cct-ct12AY.430.000004
ORF1ab/nsp31442P1442del1ccTcc-12AY.430.000004
ORF1ab/nsp31442P1442del1Cct-ct11AY.1020.000027
ORF1ab/nsp31442P1442del1Cct-ct11AY.120.10.000321
ORF1ab/nsp31442P1442del1ccTcc-11AY.260.000028
ORF1ab/nsp31442P1442del1Cct-ct11AY.330.000067
ORF1ab/nsp31442P1442del1CcT-cC11AY.40.000002
ORF1ab/nsp31442P1442del1ccTcc-11B.1.1.280.000311
ORF1ab/nsp31442P1442del1Cct-ct11B.1.1.70.000001
ORF1ab/nsp31442P1442del1ccTcc-11B.1.20.000009
ORF1ab/nsp31442P1442del1ccTcc-11B.1.4290.000024
ORF1ab/nsp31442P1442del1Cct-ct11B.1.617.20.000004