CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = P1442S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31442P1442SP2260SnonsynCctTct102110200.9990217043-7045
ORF1ab/nsp31442P1442SP2260SnonsynCcTTcC102110.0009794327043-7045

Details of the mutation P1442S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31442P1442SCctTct10201021All0.000195
ORF1ab/nsp31442P1442SCcTTcC11021All0
ORF1ab/nsp31442P1442SCctTct283283P.60.889937
ORF1ab/nsp31442P1442SCctTct150150B.1.1.70.000134
ORF1ab/nsp31442P1442SCctTct134134AY.40.000209
ORF1ab/nsp31442P1442SCctTct5656B.1.3690.015973
ORF1ab/nsp31442P1442SCctTct3232B.1.1.2970.071588
ORF1ab/nsp31442P1442SCctTct3232B.1.2390.039072
ORF1ab/nsp31442P1442SCctTct2626B.1.617.20.000098
ORF1ab/nsp31442P1442SCctTct2323B.1.258.170.002391
ORF1ab/nsp31442P1442SCctTct2020B.1.10.000363
ORF1ab/nsp31442P1442SCctTct1818B.1.20.000158
ORF1ab/nsp31442P1442SCctTct1616B.10.000147
ORF1ab/nsp31442P1442SCctTct1414AY.1030.000087
ORF1ab/nsp31442P1442SCctTct1313AY.440.000079
ORF1ab/nsp31442P1442SCctTct1212B.1.4270.000606
ORF1ab/nsp31442P1442SCctTct1111B.1.2580.000732
ORF1ab/nsp31442P1442SCctTct1010B.1.1770.000132
ORF1ab/nsp31442P1442SCctTct99AY.430.00004
ORF1ab/nsp31442P1442SCctTct77B.1.4290.000165
ORF1ab/nsp31442P1442SCctTct66AY.250.000036
ORF1ab/nsp31442P1442SCctTct66AY.690.00112
ORF1ab/nsp31442P1442SCctTct66P.1.100.001617
ORF1ab/nsp31442P1442SCctTct55AY.1130.000712
ORF1ab/nsp31442P1442SCctTct55B.1.5260.000118
ORF1ab/nsp31442P1442SCctTct44AY.1020.000106
ORF1ab/nsp31442P1442SCctTct44AY.30.00004
ORF1ab/nsp31442P1442SCctTct44AY.4.20.000087
ORF1ab/nsp31442P1442SCctTct44AY.410.001176
ORF1ab/nsp31442P1442SCctTct44AY.450.000487
ORF1ab/nsp31442P1442SCctTct44P.10.000063
ORF1ab/nsp31442P1442SCctTct33AY.260.000085
ORF1ab/nsp31442P1442SCctTct33AY.330.0002
ORF1ab/nsp31442P1442SCctTct33AY.750.000168
ORF1ab/nsp31442P1442SCctTct33B.1.1.280.000934
ORF1ab/nsp31442P1442SCctTct33B.1.1.5190.000119
ORF1ab/nsp31442P1442SCctTct33B.1.3960.002117
ORF1ab/nsp31442P1442SCctTct33D.20.000225
ORF1ab/nsp31442P1442SCctTct120.055556
ORF1ab/nsp31442P1442SCcTTcC120.055556
ORF1ab/nsp31442P1442SCctTct22AB.10.016393
ORF1ab/nsp31442P1442SCctTct22AY.1190.000071
ORF1ab/nsp31442P1442SCctTct22AY.1200.000074
ORF1ab/nsp31442P1442SCctTct22AY.200.000078
ORF1ab/nsp31442P1442SCctTct22AY.310.037037
ORF1ab/nsp31442P1442SCctTct22AY.470.000062
ORF1ab/nsp31442P1442SCctTct22AY.99.20.000184
ORF1ab/nsp31442P1442SCctTct22B.1.1.3050.007722
ORF1ab/nsp31442P1442SCctTct22B.1.177.180.00232
ORF1ab/nsp31442P1442SCctTct22B.1.2430.000139
ORF1ab/nsp31442P1442SCctTct22B.1.3510.000059
ORF1ab/nsp31442P1442SCctTct22B.1.3670.001585
ORF1ab/nsp31442P1442SCctTct22B.1.5930.021739
ORF1ab/nsp31442P1442SCctTct22B.1.6090.000959
ORF1ab/nsp31442P1442SCctTct22B.1.6370.000146
ORF1ab/nsp31442P1442SCctTct11A0.000387
ORF1ab/nsp31442P1442SCctTct11AE.80.000489
ORF1ab/nsp31442P1442SCctTct11AY.1000.000046
ORF1ab/nsp31442P1442SCctTct11AY.1170.000085
ORF1ab/nsp31442P1442SCctTct11AY.160.00038
ORF1ab/nsp31442P1442SCctTct11AY.16.10.00047
ORF1ab/nsp31442P1442SCctTct11AY.300.000396
ORF1ab/nsp31442P1442SCctTct11AY.340.000097
ORF1ab/nsp31442P1442SCctTct11AY.390.000025
ORF1ab/nsp31442P1442SCctTct11AY.4.2.10.000149
ORF1ab/nsp31442P1442SCctTct11AY.4.30.000842
ORF1ab/nsp31442P1442SCctTct11AY.420.00004
ORF1ab/nsp31442P1442SCctTct11AY.46.60.000072
ORF1ab/nsp31442P1442SCctTct11AY.60.000041
ORF1ab/nsp31442P1442SCctTct11AY.75.10.00018
ORF1ab/nsp31442P1442SCctTct11AY.820.001357
ORF1ab/nsp31442P1442SCctTct11AY.870.000833
ORF1ab/nsp31442P1442SCctTct11AY.90.000068
ORF1ab/nsp31442P1442SCctTct11AY.9.20.000037
ORF1ab/nsp31442P1442SCctTct11B.1.1.1290.009174
ORF1ab/nsp31442P1442SCctTct11B.1.1.1810.004545
ORF1ab/nsp31442P1442SCctTct11B.1.1.2400.004695
ORF1ab/nsp31442P1442SCctTct11B.1.1.250.000569
ORF1ab/nsp31442P1442SCctTct11B.1.1.2650.003155
ORF1ab/nsp31442P1442SCctTct11B.1.1.2840.000107
ORF1ab/nsp31442P1442SCctTct11B.1.1.3060.000438
ORF1ab/nsp31442P1442SCctTct11B.1.1.4610.012048
ORF1ab/nsp31442P1442SCctTct11B.1.1.670.004566
ORF1ab/nsp31442P1442SCctTct11B.1.1080.005814
ORF1ab/nsp31442P1442SCctTct11B.1.110.30.000718
ORF1ab/nsp31442P1442SCctTct11B.1.177.670.007634
ORF1ab/nsp31442P1442SCctTct11B.1.177.80.000752
ORF1ab/nsp31442P1442SCctTct11B.1.2210.000071
ORF1ab/nsp31442P1442SCctTct11B.1.2340.000132
ORF1ab/nsp31442P1442SCctTct11B.1.258.30.001675
ORF1ab/nsp31442P1442SCctTct11B.1.4240.008065
ORF1ab/nsp31442P1442SCctTct11B.1.4590.004082
ORF1ab/nsp31442P1442SCctTct11B.1.466.20.000391
ORF1ab/nsp31442P1442SCctTct11B.1.617.10.000129
ORF1ab/nsp31442P1442SCctTct11B.1.9.50.005682
ORF1ab/nsp31442P1442SCctTct11B.400.000364
ORF1ab/nsp31442P1442SCctTct11C.370.000116
ORF1ab/nsp31442P1442SCctTct11P.1.10.000318
ORF1ab/nsp31442P1442SCctTct11P.1.130.000898
ORF1ab/nsp31442P1442SCctTct11P.1.140.000048
ORF1ab/nsp31442P1442SCctTct11P.1.170.000162
ORF1ab/nsp31442P1442SCctTct11P.30.001595
ORF1ab/nsp31442P1442SCctTct11P.70.004367
ORF1ab/nsp31442P1442SCctTct11Q.10.000126
ORF1ab/nsp31442P1442SCctTct11S.10.00495