CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = P1261S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31261P1261SP2079SnonsynCcaTca417041680.999526500-6502
ORF1ab/nsp31261P1261SP2079SnonsynCcATcG417010.0002398086500-6502
ORF1ab/nsp31261P1261SP2079SnonsynCcATcT417010.0002398086500-6502

Details of the mutation P1261S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31261P1261SCcaTca41684170All0.000797
ORF1ab/nsp31261P1261SCcATcG14170All0
ORF1ab/nsp31261P1261SCcATcT14170All0
ORF1ab/nsp31261P1261SCcaTca412412AY.250.002478
ORF1ab/nsp31261P1261SCcaTca402402B.1.617.20.001514
ORF1ab/nsp31261P1261SCcaTca341341B.1.1.70.000305
ORF1ab/nsp31261P1261SCcaTca324325AY.430.001435
ORF1ab/nsp31261P1261SCcATcG1325AY.430.000004
ORF1ab/nsp31261P1261SCcaTca283283AY.40.00044
ORF1ab/nsp31261P1261SCcaTca240240B.1.438.10.025743
ORF1ab/nsp31261P1261SCcaTca201201B.1.4480.527559
ORF1ab/nsp31261P1261SCcaTca169169B.1.20.001488
ORF1ab/nsp31261P1261SCcaTca167167AY.740.019313
ORF1ab/nsp31261P1261SCcaTca162163B.10.001484
ORF1ab/nsp31261P1261SCcATcT1163B.10.000009
ORF1ab/nsp31261P1261SCcaTca9898B.1.2430.006819
ORF1ab/nsp31261P1261SCcaTca8484B.1.5260.001974
ORF1ab/nsp31261P1261SCcaTca7171AY.1020.001882
ORF1ab/nsp31261P1261SCcaTca5151P.10.000803
ORF1ab/nsp31261P1261SCcaTca5050B.1.4270.002525
ORF1ab/nsp31261P1261SCcaTca4949B.1.1.5190.001946
ORF1ab/nsp31261P1261SCcaTca4747AY.100.024907
ORF1ab/nsp31261P1261SCcaTca4646B.1.1770.000606
ORF1ab/nsp31261P1261SCcaTca4444AY.1030.000273
ORF1ab/nsp31261P1261SCcaTca4444AY.440.000268
ORF1ab/nsp31261P1261SCcaTca4040AY.340.003879
ORF1ab/nsp31261P1261SCcaTca3939B.1.1.3940.95122
ORF1ab/nsp31261P1261SCcaTca3838B.1.4010.311475
ORF1ab/nsp31261P1261SCcaTca3131AY.290.000489
ORF1ab/nsp31261P1261SCcaTca3030AY.490.095847
ORF1ab/nsp31261P1261SCcaTca2929AY.30.000288
ORF1ab/nsp31261P1261SCcaTca2424AY.230.001674
ORF1ab/nsp31261P1261SCcaTca2424B.1.5960.002091
ORF1ab/nsp31261P1261SCcaTca2222B.1.6090.010547
ORF1ab/nsp31261P1261SCcaTca2020B.1.10.000363
ORF1ab/nsp31261P1261SCcaTca1818AY.390.000445
ORF1ab/nsp31261P1261SCcaTca1818AY.470.00056
ORF1ab/nsp31261P1261SCcaTca1818R.10.00162
ORF1ab/nsp31261P1261SCcaTca1717B.1.1.1760.007469
ORF1ab/nsp31261P1261SCcaTca1616B.1.4220.012998
ORF1ab/nsp31261P1261SCcaTca1515B.1.3110.004119
ORF1ab/nsp31261P1261SCcaTca1515B.1.6370.001096
ORF1ab/nsp31261P1261SCcaTca1414AY.50.000289
ORF1ab/nsp31261P1261SCcaTca1313AY.140.001144
ORF1ab/nsp31261P1261SCcaTca1313AY.200.000505
ORF1ab/nsp31261P1261SCcaTca1212AY.1000.000552
ORF1ab/nsp31261P1261SCcaTca1212AY.610.001257
ORF1ab/nsp31261P1261SCcaTca1212B.1.2400.002587
ORF1ab/nsp31261P1261SCcaTca1111AY.1180.000689
ORF1ab/nsp31261P1261SCcaTca1111B.1.3510.000327
ORF1ab/nsp31261P1261SCcaTca1111B.1.360.001605
ORF1ab/nsp31261P1261SCcaTca1010AY.4.20.000217
ORF1ab/nsp31261P1261SCcaTca1010P.1.150.002323
ORF1ab/nsp31261P1261SCcaTca99AY.460.000937
ORF1ab/nsp31261P1261SCcaTca99B.1.5820.004416
ORF1ab/nsp31261P1261SCcaTca88B.1.3690.002282
ORF1ab/nsp31261P1261SCcaTca77AY.1170.000592
ORF1ab/nsp31261P1261SCcaTca77AY.1200.00026
ORF1ab/nsp31261P1261SCcaTca77AY.260.000198
ORF1ab/nsp31261P1261SCcaTca77AY.750.000392
ORF1ab/nsp31261P1261SCcaTca77B.1.1.3720.004821
ORF1ab/nsp31261P1261SCcaTca77B.1.177.90.009321
ORF1ab/nsp31261P1261SCcaTca77B.1.4290.000165
ORF1ab/nsp31261P1261SCcaTca66AY.1130.000854
ORF1ab/nsp31261P1261SCcaTca66B.1.6210.000531
ORF1ab/nsp31261P1261SCcaTca66P.1.70.001916
ORF1ab/nsp31261P1261SCcaTca55A.190.04717
ORF1ab/nsp31261P1261SCcaTca55B.1.1.630.001929
ORF1ab/nsp31261P1261SCcaTca55P.1.140.000239
ORF1ab/nsp31261P1261SCcaTca44AY.360.000593
ORF1ab/nsp31261P1261SCcaTca44AY.39.10.000158
ORF1ab/nsp31261P1261SCcaTca44AY.4.50.00043
ORF1ab/nsp31261P1261SCcaTca44AY.450.000487
ORF1ab/nsp31261P1261SCcaTca44AY.530.00115
ORF1ab/nsp31261P1261SCcaTca44AY.99.20.000369
ORF1ab/nsp31261P1261SCcaTca44B.1.1.1530.004381
ORF1ab/nsp31261P1261SCcaTca44B.1.214.30.028571
ORF1ab/nsp31261P1261SCcaTca44B.1.36.290.002069
ORF1ab/nsp31261P1261SCcaTca44B.1.5250.000453
ORF1ab/nsp31261P1261SCcaTca44B.1.5950.001044
ORF1ab/nsp31261P1261SCcaTca44P.20.000747
ORF1ab/nsp31261P1261SCcaTca44Q.10.000505
ORF1ab/nsp31261P1261SCcaTca33A.2.50.001497
ORF1ab/nsp31261P1261SCcaTca33AE.80.001467
ORF1ab/nsp31261P1261SCcaTca33AY.1190.000106
ORF1ab/nsp31261P1261SCcaTca33AY.270.000194
ORF1ab/nsp31261P1261SCcaTca33AY.3.10.000256
ORF1ab/nsp31261P1261SCcaTca33AY.4.2.10.000447
ORF1ab/nsp31261P1261SCcaTca33AY.420.000121
ORF1ab/nsp31261P1261SCcaTca33AY.46.40.000494
ORF1ab/nsp31261P1261SCcaTca33AY.5.30.001012
ORF1ab/nsp31261P1261SCcaTca33AY.870.002498
ORF1ab/nsp31261P1261SCcaTca33AY.90.000203
ORF1ab/nsp31261P1261SCcaTca33AY.98.10.000145
ORF1ab/nsp31261P1261SCcaTca33B.1.1.1410.006036
ORF1ab/nsp31261P1261SCcaTca33B.1.1.370.000579
ORF1ab/nsp31261P1261SCcaTca33B.1.1600.000094
ORF1ab/nsp31261P1261SCcaTca33B.1.2580.0002
ORF1ab/nsp31261P1261SCcaTca33B.1.4040.003906
ORF1ab/nsp31261P1261SCcaTca33B.1.4680.017143
ORF1ab/nsp31261P1261SCcaTca33B.1.5170.001281
ORF1ab/nsp31261P1261SCcaTca33B.400.001093
ORF1ab/nsp31261P1261SCcaTca33C.370.000348
ORF1ab/nsp31261P1261SCcaTca22A.210.00554
ORF1ab/nsp31261P1261SCcaTca22AY.1060.00067
ORF1ab/nsp31261P1261SCcaTca22AY.46.60.000144
ORF1ab/nsp31261P1261SCcaTca22AY.620.000871
ORF1ab/nsp31261P1261SCcaTca22AY.840.000875
ORF1ab/nsp31261P1261SCcaTca22AY.9.10.000167
ORF1ab/nsp31261P1261SCcaTca22AY.980.000158
ORF1ab/nsp31261P1261SCcaTca22B.1.1.10.000653
ORF1ab/nsp31261P1261SCcaTca22B.1.1.2140.000111
ORF1ab/nsp31261P1261SCcaTca22B.1.1.2220.000408
ORF1ab/nsp31261P1261SCcaTca22B.1.1.2840.000215
ORF1ab/nsp31261P1261SCcaTca22B.1.1.2860.005797
ORF1ab/nsp31261P1261SCcaTca22B.1.1.4090.005666
ORF1ab/nsp31261P1261SCcaTca22B.1.177.210.000153
ORF1ab/nsp31261P1261SCcaTca22B.1.2210.000142
ORF1ab/nsp31261P1261SCcaTca22B.1.2340.000264
ORF1ab/nsp31261P1261SCcaTca22B.1.3190.006098
ORF1ab/nsp31261P1261SCcaTca22B.1.3560.003454
ORF1ab/nsp31261P1261SCcaTca22B.1.36.180.00084
ORF1ab/nsp31261P1261SCcaTca22B.1.5610.000794
ORF1ab/nsp31261P1261SCcaTca22B.1.619.10.001283
ORF1ab/nsp31261P1261SCcaTca22B.1.6280.000705
ORF1ab/nsp31261P1261SCcaTca22D.20.00015
ORF1ab/nsp31261P1261SCcaTca22P.1.100.000539
ORF1ab/nsp31261P1261SCcaTca11A.20.000662
ORF1ab/nsp31261P1261SCcaTca11AY.10.000396
ORF1ab/nsp31261P1261SCcaTca11AY.116.10.000311
ORF1ab/nsp31261P1261SCcaTca11AY.120.000316
ORF1ab/nsp31261P1261SCcaTca11AY.1210.000135
ORF1ab/nsp31261P1261SCcaTca11AY.130.000161
ORF1ab/nsp31261P1261SCcaTca11AY.190.00114
ORF1ab/nsp31261P1261SCcaTca11AY.240.000431
ORF1ab/nsp31261P1261SCcaTca11AY.29.10.000221
ORF1ab/nsp31261P1261SCcaTca11AY.320.000532
ORF1ab/nsp31261P1261SCcaTca11AY.4.30.000842
ORF1ab/nsp31261P1261SCcaTca11AY.46.10.001027
ORF1ab/nsp31261P1261SCcaTca11AY.5.40.000277
ORF1ab/nsp31261P1261SCcaTca11AY.500.000799
ORF1ab/nsp31261P1261SCcaTca11AY.540.000095
ORF1ab/nsp31261P1261SCcaTca11AY.550.000917
ORF1ab/nsp31261P1261SCcaTca11AY.60.000041
ORF1ab/nsp31261P1261SCcaTca11AY.75.10.00018
ORF1ab/nsp31261P1261SCcaTca11AY.850.000427
ORF1ab/nsp31261P1261SCcaTca11AY.9.20.000037
ORF1ab/nsp31261P1261SCcaTca11B.1.1.100.001115
ORF1ab/nsp31261P1261SCcaTca11B.1.1.1420.017544
ORF1ab/nsp31261P1261SCcaTca11B.1.1.2430.004082
ORF1ab/nsp31261P1261SCcaTca11B.1.1.2650.003155
ORF1ab/nsp31261P1261SCcaTca11B.1.1.2770.000759
ORF1ab/nsp31261P1261SCcaTca11B.1.1.280.000311
ORF1ab/nsp31261P1261SCcaTca11B.1.1.3060.000438
ORF1ab/nsp31261P1261SCcaTca11B.1.1.330.000421
ORF1ab/nsp31261P1261SCcaTca11B.1.1.3480.000796
ORF1ab/nsp31261P1261SCcaTca11B.1.1.390.00051
ORF1ab/nsp31261P1261SCcaTca11B.1.1.3970.002252
ORF1ab/nsp31261P1261SCcaTca11B.1.1.4200.001006
ORF1ab/nsp31261P1261SCcaTca11B.1.1.440.00241
ORF1ab/nsp31261P1261SCcaTca11B.1.1.700.000341
ORF1ab/nsp31261P1261SCcaTca11B.1.1260.001276
ORF1ab/nsp31261P1261SCcaTca11B.1.160.320.004292
ORF1ab/nsp31261P1261SCcaTca11B.1.177.550.002331
ORF1ab/nsp31261P1261SCcaTca11B.1.177.730.000566
ORF1ab/nsp31261P1261SCcaTca11B.1.177.770.000726
ORF1ab/nsp31261P1261SCcaTca11B.1.2100.002132
ORF1ab/nsp31261P1261SCcaTca11B.1.2320.000537
ORF1ab/nsp31261P1261SCcaTca11B.1.2330.014085
ORF1ab/nsp31261P1261SCcaTca11B.1.2390.001221
ORF1ab/nsp31261P1261SCcaTca11B.1.258.110.000396
ORF1ab/nsp31261P1261SCcaTca11B.1.2680.010417
ORF1ab/nsp31261P1261SCcaTca11B.1.2800.007143
ORF1ab/nsp31261P1261SCcaTca11B.1.3200.001245
ORF1ab/nsp31261P1261SCcaTca11B.1.3250.006897
ORF1ab/nsp31261P1261SCcaTca11B.1.36.260.002857
ORF1ab/nsp31261P1261SCcaTca11B.1.36.380.001642
ORF1ab/nsp31261P1261SCcaTca11B.1.36.390.002217
ORF1ab/nsp31261P1261SCcaTca11B.1.3960.000706
ORF1ab/nsp31261P1261SCcaTca11B.1.400.10.015152
ORF1ab/nsp31261P1261SCcaTca11B.1.4110.003704
ORF1ab/nsp31261P1261SCcaTca11B.1.4240.008065
ORF1ab/nsp31261P1261SCcaTca11B.1.4410.009615
ORF1ab/nsp31261P1261SCcaTca11B.1.4560.003268
ORF1ab/nsp31261P1261SCcaTca11B.1.5480.035714
ORF1ab/nsp31261P1261SCcaTca11B.1.5510.00129
ORF1ab/nsp31261P1261SCcaTca11B.1.5680.001111
ORF1ab/nsp31261P1261SCcaTca11B.1.6100.003546
ORF1ab/nsp31261P1261SCcaTca11B.1.6190.000871
ORF1ab/nsp31261P1261SCcaTca11B.60.00091
ORF1ab/nsp31261P1261SCcaTca11C.160.00106
ORF1ab/nsp31261P1261SCcaTca11C.360.000911
ORF1ab/nsp31261P1261SCcaTca11C.36.30.000567
ORF1ab/nsp31261P1261SCcaTca11C.40.01
ORF1ab/nsp31261P1261SCcaTca11P.1.120.000484
ORF1ab/nsp31261P1261SCcaTca11P.1.170.000162