CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = P1228S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31228P1228SP2046SnonsynCcaTca4365436516401-6403

Details of the mutation P1228S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31228P1228SCcaTca43654365All0.000835
ORF1ab/nsp31228P1228SCcaTca19951995B.1.1.70.001786
ORF1ab/nsp31228P1228SCcaTca404404B.1.6250.950588
ORF1ab/nsp31228P1228SCcaTca329329B.1.1.2550.99697
ORF1ab/nsp31228P1228SCcaTca212212B.1.20.001867
ORF1ab/nsp31228P1228SCcaTca199199B.10.001823
ORF1ab/nsp31228P1228SCcaTca114114B.1.2580.007586
ORF1ab/nsp31228P1228SCcaTca7474B.1.4290.001741
ORF1ab/nsp31228P1228SCcaTca6262B.1.5260.001457
ORF1ab/nsp31228P1228SCcaTca6060B.1.2730.779221
ORF1ab/nsp31228P1228SCcaTca5858P.10.000914
ORF1ab/nsp31228P1228SCcaTca4444B.1.10.000798
ORF1ab/nsp31228P1228SCcaTca4343B.1.1770.000566
ORF1ab/nsp31228P1228SCcaTca4040AY.260.001132
ORF1ab/nsp31228P1228SCcaTca3737B.1.1.700.012619
ORF1ab/nsp31228P1228SCcaTca2929B.1.438.10.003111
ORF1ab/nsp31228P1228SCcaTca2323B.1.1.5190.000913
ORF1ab/nsp31228P1228SCcaTca2323B.1.1600.000717
ORF1ab/nsp31228P1228SCcaTca2020B.1.177.750.020812
ORF1ab/nsp31228P1228SCcaTca1919B.1.617.20.000072
ORF1ab/nsp31228P1228SCcaTca1818AY.470.00056
ORF1ab/nsp31228P1228SCcaTca1818B.1.6210.001593
ORF1ab/nsp31228P1228SCcaTca1818B.1.621.10.009105
ORF1ab/nsp31228P1228SCcaTca1717B.1.6370.001242
ORF1ab/nsp31228P1228SCcaTca1616R.10.00144
ORF1ab/nsp31228P1228SCcaTca1515P.1.70.004789
ORF1ab/nsp31228P1228SCcaTca1414B.1.3510.000416
ORF1ab/nsp31228P1228SCcaTca1313AH.30.04943
ORF1ab/nsp31228P1228SCcaTca1212B.1.1.2220.002448
ORF1ab/nsp31228P1228SCcaTca1212B.1.1.4450.444444
ORF1ab/nsp31228P1228SCcaTca1212B.1.258.170.001248
ORF1ab/nsp31228P1228SCcaTca1010B.1.1.630.003858
ORF1ab/nsp31228P1228SCcaTca1010B.1.4360.010288
ORF1ab/nsp31228P1228SCcaTca99B.1.1.250.005117
ORF1ab/nsp31228P1228SCcaTca88B.1.1.3180.002414
ORF1ab/nsp31228P1228SCcaTca88B.1.3690.002282
ORF1ab/nsp31228P1228SCcaTca88B.1.6230.004292
ORF1ab/nsp31228P1228SCcaTca88Q.10.001011
ORF1ab/nsp31228P1228SCcaTca77AY.270.000453
ORF1ab/nsp31228P1228SCcaTca77AY.350.001631
ORF1ab/nsp31228P1228SCcaTca77B.1.2210.000497
ORF1ab/nsp31228P1228SCcaTca77B.1.2340.000924
ORF1ab/nsp31228P1228SCcaTca77B.1.5250.000792
ORF1ab/nsp31228P1228SCcaTca66AY.610.000629
ORF1ab/nsp31228P1228SCcaTca66B.1.177.860.001101
ORF1ab/nsp31228P1228SCcaTca66B.1.2430.000418
ORF1ab/nsp31228P1228SCcaTca66B.1.3110.001647
ORF1ab/nsp31228P1228SCcaTca66B.1.5960.000523
ORF1ab/nsp31228P1228SCcaTca66C.370.000696
ORF1ab/nsp31228P1228SCcaTca55A.210.01385
ORF1ab/nsp31228P1228SCcaTca55AY.590.002648
ORF1ab/nsp31228P1228SCcaTca55AY.90.000338
ORF1ab/nsp31228P1228SCcaTca55B0.000639
ORF1ab/nsp31228P1228SCcaTca55B.1.1.1380.030303
ORF1ab/nsp31228P1228SCcaTca55B.1.1.1760.002197
ORF1ab/nsp31228P1228SCcaTca55B.1.1.2140.000277
ORF1ab/nsp31228P1228SCcaTca55B.1.1.370.000964
ORF1ab/nsp31228P1228SCcaTca55B.1.1280.003177
ORF1ab/nsp31228P1228SCcaTca55B.1.2760.084746
ORF1ab/nsp31228P1228SCcaTca55B.1.4200.052083
ORF1ab/nsp31228P1228SCcaTca55B.1.5650.004052
ORF1ab/nsp31228P1228SCcaTca55Q.80.000825
ORF1ab/nsp31228P1228SCcaTca44AY.510.003636
ORF1ab/nsp31228P1228SCcaTca44AY.750.000224
ORF1ab/nsp31228P1228SCcaTca44AY.9.10.000335
ORF1ab/nsp31228P1228SCcaTca44AY.9.20.000147
ORF1ab/nsp31228P1228SCcaTca44B.1.1.280.001245
ORF1ab/nsp31228P1228SCcaTca44B.1.1.390.002039
ORF1ab/nsp31228P1228SCcaTca44B.1.177.120.000607
ORF1ab/nsp31228P1228SCcaTca44B.1.360.000584
ORF1ab/nsp31228P1228SCcaTca44B.1.4270.000202
ORF1ab/nsp31228P1228SCcaTca44B.1.6090.001918
ORF1ab/nsp31228P1228SCcaTca44B.1.617.30.01194
ORF1ab/nsp31228P1228SCcaTca33AY.130.000483
ORF1ab/nsp31228P1228SCcaTca33AY.140.000264
ORF1ab/nsp31228P1228SCcaTca33AY.250.000018
ORF1ab/nsp31228P1228SCcaTca33AY.540.000286
ORF1ab/nsp31228P1228SCcaTca33AY.670.001393
ORF1ab/nsp31228P1228SCcaTca33B.1.1.3060.001315
ORF1ab/nsp31228P1228SCcaTca33B.1.1.3480.002389
ORF1ab/nsp31228P1228SCcaTca33B.1.177.870.002183
ORF1ab/nsp31228P1228SCcaTca33B.1.1950.015075
ORF1ab/nsp31228P1228SCcaTca33B.1.36.290.001552
ORF1ab/nsp31228P1228SCcaTca33D.20.000225
ORF1ab/nsp31228P1228SCcaTca220.111111
ORF1ab/nsp31228P1228SCcaTca22A.30.004193
ORF1ab/nsp31228P1228SCcaTca22AY.440.000012
ORF1ab/nsp31228P1228SCcaTca22AY.580.001815
ORF1ab/nsp31228P1228SCcaTca22B.1.1.1750.153846
ORF1ab/nsp31228P1228SCcaTca22B.1.1.2160.001781
ORF1ab/nsp31228P1228SCcaTca22B.1.1.2770.001517
ORF1ab/nsp31228P1228SCcaTca22B.1.1.3170.000823
ORF1ab/nsp31228P1228SCcaTca22B.1.1.3690.000892
ORF1ab/nsp31228P1228SCcaTca22B.1.1.3720.001377
ORF1ab/nsp31228P1228SCcaTca22B.1.1.4160.00181
ORF1ab/nsp31228P1228SCcaTca22B.1.1.4320.002532
ORF1ab/nsp31228P1228SCcaTca22B.1.1.4340.000697
ORF1ab/nsp31228P1228SCcaTca22B.1.1.440.004819
ORF1ab/nsp31228P1228SCcaTca22B.1.130.004751
ORF1ab/nsp31228P1228SCcaTca22B.1.177.560.001335
ORF1ab/nsp31228P1228SCcaTca22B.1.177.730.001133
ORF1ab/nsp31228P1228SCcaTca22B.1.1990.008264
ORF1ab/nsp31228P1228SCcaTca22B.1.2410.001623
ORF1ab/nsp31228P1228SCcaTca22B.1.3990.003868
ORF1ab/nsp31228P1228SCcaTca22B.1.5300.014286
ORF1ab/nsp31228P1228SCcaTca22B.1.5600.009259
ORF1ab/nsp31228P1228SCcaTca22B.1.5610.000794
ORF1ab/nsp31228P1228SCcaTca22B.1.5750.000607
ORF1ab/nsp31228P1228SCcaTca22B.1.5820.000981
ORF1ab/nsp31228P1228SCcaTca22B.1.5950.000522
ORF1ab/nsp31228P1228SCcaTca22B.1.5970.009259
ORF1ab/nsp31228P1228SCcaTca22B.1.617.10.000258
ORF1ab/nsp31228P1228SCcaTca22N.50.003534
ORF1ab/nsp31228P1228SCcaTca22P.20.000373
ORF1ab/nsp31228P1228SCcaTca11A.230.010526
ORF1ab/nsp31228P1228SCcaTca11AD.20.000219
ORF1ab/nsp31228P1228SCcaTca11AE.80.000489
ORF1ab/nsp31228P1228SCcaTca11AY.1080.001103
ORF1ab/nsp31228P1228SCcaTca11AY.160.00038
ORF1ab/nsp31228P1228SCcaTca11AY.16.10.00047
ORF1ab/nsp31228P1228SCcaTca11AY.40.000002
ORF1ab/nsp31228P1228SCcaTca11AY.450.000122
ORF1ab/nsp31228P1228SCcaTca11AY.570.000656
ORF1ab/nsp31228P1228SCcaTca11AY.620.000436
ORF1ab/nsp31228P1228SCcaTca11AY.650.000533
ORF1ab/nsp31228P1228SCcaTca11AY.680.000274
ORF1ab/nsp31228P1228SCcaTca11AY.740.000116
ORF1ab/nsp31228P1228SCcaTca11AY.75.10.00018
ORF1ab/nsp31228P1228SCcaTca11AY.80.000606
ORF1ab/nsp31228P1228SCcaTca11B.1.1.100.001115
ORF1ab/nsp31228P1228SCcaTca11B.1.1.1010.01
ORF1ab/nsp31228P1228SCcaTca11B.1.1.1570.000913
ORF1ab/nsp31228P1228SCcaTca11B.1.1.2650.003155
ORF1ab/nsp31228P1228SCcaTca11B.1.1.2860.002899
ORF1ab/nsp31228P1228SCcaTca11B.1.1.3160.000925
ORF1ab/nsp31228P1228SCcaTca11B.1.1.3260.001761
ORF1ab/nsp31228P1228SCcaTca11B.1.1.3540.004386
ORF1ab/nsp31228P1228SCcaTca11B.1.1.3970.002252
ORF1ab/nsp31228P1228SCcaTca11B.1.1.4090.002833
ORF1ab/nsp31228P1228SCcaTca11B.1.1.4130.006897
ORF1ab/nsp31228P1228SCcaTca11B.1.1.4200.001006
ORF1ab/nsp31228P1228SCcaTca11B.1.1.4290.004608
ORF1ab/nsp31228P1228SCcaTca11B.1.1.4620.008621
ORF1ab/nsp31228P1228SCcaTca11B.1.1.500.000679
ORF1ab/nsp31228P1228SCcaTca11B.1.1.5070.008696
ORF1ab/nsp31228P1228SCcaTca11B.1.1.520.012195
ORF1ab/nsp31228P1228SCcaTca11B.1.1.5230.001563
ORF1ab/nsp31228P1228SCcaTca11B.1.1.530.013699
ORF1ab/nsp31228P1228SCcaTca11B.1.1.80.003584
ORF1ab/nsp31228P1228SCcaTca11B.1.1310.008772
ORF1ab/nsp31228P1228SCcaTca11B.1.1490.003425
ORF1ab/nsp31228P1228SCcaTca11B.1.1570.002985
ORF1ab/nsp31228P1228SCcaTca11B.1.177.420.000894
ORF1ab/nsp31228P1228SCcaTca11B.1.177.440.000519
ORF1ab/nsp31228P1228SCcaTca11B.1.177.530.002392
ORF1ab/nsp31228P1228SCcaTca11B.1.177.540.000606
ORF1ab/nsp31228P1228SCcaTca11B.1.177.570.000281
ORF1ab/nsp31228P1228SCcaTca11B.1.177.580.001332
ORF1ab/nsp31228P1228SCcaTca11B.1.177.60.000977
ORF1ab/nsp31228P1228SCcaTca11B.1.177.600.000218
ORF1ab/nsp31228P1228SCcaTca11B.1.177.770.000726
ORF1ab/nsp31228P1228SCcaTca11B.1.214.20.0006
ORF1ab/nsp31228P1228SCcaTca11B.1.221.30.000833
ORF1ab/nsp31228P1228SCcaTca11B.1.230.006061
ORF1ab/nsp31228P1228SCcaTca11B.1.2390.001221
ORF1ab/nsp31228P1228SCcaTca11B.1.258.110.000396
ORF1ab/nsp31228P1228SCcaTca11B.1.258.140.00098
ORF1ab/nsp31228P1228SCcaTca11B.1.2790.000514
ORF1ab/nsp31228P1228SCcaTca11B.1.3190.003049
ORF1ab/nsp31228P1228SCcaTca11B.1.3360.002439
ORF1ab/nsp31228P1228SCcaTca11B.1.351.20.000303
ORF1ab/nsp31228P1228SCcaTca11B.1.351.50.0006
ORF1ab/nsp31228P1228SCcaTca11B.1.36.170.000494
ORF1ab/nsp31228P1228SCcaTca11B.1.36.360.000602
ORF1ab/nsp31228P1228SCcaTca11B.1.3670.000792
ORF1ab/nsp31228P1228SCcaTca11B.1.3890.001002
ORF1ab/nsp31228P1228SCcaTca11B.1.4110.003704
ORF1ab/nsp31228P1228SCcaTca11B.1.4160.001269
ORF1ab/nsp31228P1228SCcaTca11B.1.4380.006536
ORF1ab/nsp31228P1228SCcaTca11B.1.4660.023256
ORF1ab/nsp31228P1228SCcaTca11B.1.4990.00105
ORF1ab/nsp31228P1228SCcaTca11B.1.5450.014493
ORF1ab/nsp31228P1228SCcaTca11B.1.5740.002151
ORF1ab/nsp31228P1228SCcaTca11B.1.5770.000687
ORF1ab/nsp31228P1228SCcaTca11B.1.5810.009434
ORF1ab/nsp31228P1228SCcaTca11B.1.6040.017241
ORF1ab/nsp31228P1228SCcaTca11B.1.6120.002653
ORF1ab/nsp31228P1228SCcaTca11B.1.6310.003367
ORF1ab/nsp31228P1228SCcaTca11C.10.002392
ORF1ab/nsp31228P1228SCcaTca11C.2.10.006667
ORF1ab/nsp31228P1228SCcaTca11C.310.017857
ORF1ab/nsp31228P1228SCcaTca11C.90.030303
ORF1ab/nsp31228P1228SCcaTca11N.60.007092
ORF1ab/nsp31228P1228SCcaTca11P.1.120.000484
ORF1ab/nsp31228P1228SCcaTca11Q.40.000455