CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = P1200S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31200P1200SP2018SnonsynCcaTca614156910.9267226317-6319
ORF1ab/nsp31200P1200SP2018SnonsynCcATcG61414500.0732786317-6319

Details of the mutation P1200S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31200P1200SCcaTca56916141All0.001088
ORF1ab/nsp31200P1200SCcATcG4506141All0.000086
ORF1ab/nsp31200P1200SCcaTca17511751B.1.1.70.001568
ORF1ab/nsp31200P1200SCcaTca988988B.1.177.60.964844
ORF1ab/nsp31200P1200SCcaTca350350AY.40.000545
ORF1ab/nsp31200P1200SCcaTca323323B.1.36.160.460114
ORF1ab/nsp31200P1200SCcATcG270270P.1.130.242588
ORF1ab/nsp31200P1200SCcaTca221221AY.440.001345
ORF1ab/nsp31200P1200SCcaTca216216B.1.617.20.000813
ORF1ab/nsp31200P1200SCcaTca128128B.1.20.001127
ORF1ab/nsp31200P1200SCcaTca127127AY.430.000563
ORF1ab/nsp31200P1200SCcaTca124124AY.420.004989
ORF1ab/nsp31200P1200SCcATcG9898P.10.001544
ORF1ab/nsp31200P1200SCcaTca8282AY.250.000493
ORF1ab/nsp31200P1200SCcaTca8282B.1.1.1410.16499
ORF1ab/nsp31200P1200SCcaTca7676AY.1030.000472
ORF1ab/nsp31200P1200SCcaTca7676AY.600.071295
ORF1ab/nsp31200P1200SCcaTca6868AY.30.000676
ORF1ab/nsp31200P1200SCcaTca6363B.1.1770.00083
ORF1ab/nsp31200P1200SCcaTca5959AY.4.20.00128
ORF1ab/nsp31200P1200SCcATcG5656P.1.150.013011
ORF1ab/nsp31200P1200SCcaTca5050B.1.177.160.033223
ORF1ab/nsp31200P1200SCcaTca4545B.10.000412
ORF1ab/nsp31200P1200SCcaTca4040B.1.2340.005278
ORF1ab/nsp31200P1200SCcaTca3737B.1.10.000671
ORF1ab/nsp31200P1200SCcaTca3535B.1.4290.000824
ORF1ab/nsp31200P1200SCcaTca3434AY.50.000702
ORF1ab/nsp31200P1200SCcaTca3030AY.260.000849
ORF1ab/nsp31200P1200SCcaTca2929AY.1200.001078
ORF1ab/nsp31200P1200SCcaTca2929B.1.2210.00206
ORF1ab/nsp31200P1200SCcaTca2727AY.390.000667
ORF1ab/nsp31200P1200SCcaTca2121B.1.6300.109948
ORF1ab/nsp31200P1200SCcaTca1919AY.200.000738
ORF1ab/nsp31200P1200SCcaTca1818B.1.5260.000423
ORF1ab/nsp31200P1200SCcATcG1818P.1.140.00086
ORF1ab/nsp31200P1200SCcaTca1717AY.1020.000451
ORF1ab/nsp31200P1200SCcaTca1717B.1.5250.001924
ORF1ab/nsp31200P1200SCcaTca1616AY.290.000252
ORF1ab/nsp31200P1200SCcaTca1616AY.330.001068
ORF1ab/nsp31200P1200SCcaTca1515B.1.2580.000998
ORF1ab/nsp31200P1200SCcaTca1414B.1.1600.000437
ORF1ab/nsp31200P1200SCcaTca1313AY.300.005144
ORF1ab/nsp31200P1200SCcaTca1313B.1.3510.000386
ORF1ab/nsp31200P1200SCcaTca1212AY.39.10.000475
ORF1ab/nsp31200P1200SCcaTca1111AY.1000.000506
ORF1ab/nsp31200P1200SCcaTca1111AY.1040.021825
ORF1ab/nsp31200P1200SCcaTca1010AY.7.10.001127
ORF1ab/nsp31200P1200SCcaTca1010B.1.3770.045662
ORF1ab/nsp31200P1200SCcaTca99AY.3.10.000767
ORF1ab/nsp31200P1200SCcaTca99AY.610.000943
ORF1ab/nsp31200P1200SCcaTca99B.1.177.320.012146
ORF1ab/nsp31200P1200SCcaTca99B.1.4270.000454
ORF1ab/nsp31200P1200SCcaTca99C.370.001045
ORF1ab/nsp31200P1200SCcaTca88AY.1070.003728
ORF1ab/nsp31200P1200SCcaTca88AY.60.000329
ORF1ab/nsp31200P1200SCcaTca88B.1.2430.000557
ORF1ab/nsp31200P1200SCcaTca88B.1.5960.000697
ORF1ab/nsp31200P1200SCcaTca88B.1.9.40.04908
ORF1ab/nsp31200P1200SCcaTca77AY.9.20.000257
ORF1ab/nsp31200P1200SCcaTca77B.1.177.120.001062
ORF1ab/nsp31200P1200SCcaTca77D.20.000525
ORF1ab/nsp31200P1200SCcaTca66AY.110.008032
ORF1ab/nsp31200P1200SCcaTca66AY.1190.000212
ORF1ab/nsp31200P1200SCcaTca66AY.4.2.10.000894
ORF1ab/nsp31200P1200SCcaTca66AY.450.00073
ORF1ab/nsp31200P1200SCcaTca66B.1.1.390.003058
ORF1ab/nsp31200P1200SCcaTca66B.1.1.5190.000238
ORF1ab/nsp31200P1200SCcaTca55AY.460.00052
ORF1ab/nsp31200P1200SCcaTca55AY.750.00028
ORF1ab/nsp31200P1200SCcaTca55R.10.00045
ORF1ab/nsp31200P1200SCcaTca44AY.1170.000338
ORF1ab/nsp31200P1200SCcaTca44AY.540.000381
ORF1ab/nsp31200P1200SCcaTca44B.1.1.700.001364
ORF1ab/nsp31200P1200SCcaTca44B.1.177.810.000757
ORF1ab/nsp31200P1200SCcaTca44B.1.5670.013333
ORF1ab/nsp31200P1200SCcaTca44P.20.000747
ORF1ab/nsp31200P1200SCcaTca33A.10.000846
ORF1ab/nsp31200P1200SCcaTca33AY.1050.001929
ORF1ab/nsp31200P1200SCcaTca33AY.1100.000338
ORF1ab/nsp31200P1200SCcaTca33AY.160.001139
ORF1ab/nsp31200P1200SCcaTca33AY.340.000291
ORF1ab/nsp31200P1200SCcaTca33AY.780.004622
ORF1ab/nsp31200P1200SCcaTca33B.1.1.1700.003741
ORF1ab/nsp31200P1200SCcaTca33B.1.1.280.000934
ORF1ab/nsp31200P1200SCcaTca33B.1.177.650.001996
ORF1ab/nsp31200P1200SCcaTca33B.1.221.30.0025
ORF1ab/nsp31200P1200SCcaTca33B.1.36.310.005254
ORF1ab/nsp31200P1200SCcaTca33B.1.5650.002431
ORF1ab/nsp31200P1200SCcaTca33N.50.0053
ORF1ab/nsp31200P1200SCcATcG33P.1.70.000958
ORF1ab/nsp31200P1200SCcaTca33Q.80.000495
ORF1ab/nsp31200P1200SCcaTca22AY.1180.000125
ORF1ab/nsp31200P1200SCcaTca22AY.1210.000271
ORF1ab/nsp31200P1200SCcaTca22AY.23.10.000835
ORF1ab/nsp31200P1200SCcaTca22AY.630.000774
ORF1ab/nsp31200P1200SCcaTca22AY.800.002257
ORF1ab/nsp31200P1200SCcaTca22AY.890.009804
ORF1ab/nsp31200P1200SCcaTca22AY.90.000135
ORF1ab/nsp31200P1200SCcaTca22AY.910.001461
ORF1ab/nsp31200P1200SCcaTca22AY.980.000158
ORF1ab/nsp31200P1200SCcaTca22B0.000256
ORF1ab/nsp31200P1200SCcaTca22B.1.1.2140.000111
ORF1ab/nsp31200P1200SCcaTca22B.1.1.2190.01
ORF1ab/nsp31200P1200SCcaTca22B.1.1.3060.000877
ORF1ab/nsp31200P1200SCcaTca22B.1.1.330.000842
ORF1ab/nsp31200P1200SCcaTca22B.1.1.570.022989
ORF1ab/nsp31200P1200SCcaTca22B.1.1470.001512
ORF1ab/nsp31200P1200SCcaTca22B.1.1950.01005
ORF1ab/nsp31200P1200SCcaTca22B.1.258.20.009009
ORF1ab/nsp31200P1200SCcaTca22B.1.3060.011429
ORF1ab/nsp31200P1200SCcaTca22B.1.3110.000549
ORF1ab/nsp31200P1200SCcaTca22B.1.360.000292
ORF1ab/nsp31200P1200SCcaTca22B.1.36.220.002415
ORF1ab/nsp31200P1200SCcaTca22B.1.438.10.000215
ORF1ab/nsp31200P1200SCcaTca22B.1.4690.00722
ORF1ab/nsp31200P1200SCcaTca22B.1.6210.000177
ORF1ab/nsp31200P1200SCcaTca22B.1.6230.001073
ORF1ab/nsp31200P1200SCcaTca22B.1.6370.000146
ORF1ab/nsp31200P1200SCcaTca22B.1.90.012346
ORF1ab/nsp31200P1200SCcATcG22P.1.170.000324
ORF1ab/nsp31200P1200SCcATcG22P.1.17.10.00175
ORF1ab/nsp31200P1200SCcaTca22Q.40.00091
ORF1ab/nsp31200P1200SCcaTca11A.20.000662
ORF1ab/nsp31200P1200SCcaTca11A.2.40.003367
ORF1ab/nsp31200P1200SCcaTca11AP.10.001502
ORF1ab/nsp31200P1200SCcaTca11AU.10.001266
ORF1ab/nsp31200P1200SCcaTca11AY.100.00053
ORF1ab/nsp31200P1200SCcaTca11AY.1130.000142
ORF1ab/nsp31200P1200SCcaTca11AY.1150.005208
ORF1ab/nsp31200P1200SCcaTca11AY.130.000161
ORF1ab/nsp31200P1200SCcaTca11AY.190.00114
ORF1ab/nsp31200P1200SCcaTca11AY.240.000431
ORF1ab/nsp31200P1200SCcaTca11AY.380.000499
ORF1ab/nsp31200P1200SCcaTca11AY.470.000031
ORF1ab/nsp31200P1200SCcaTca11AY.5.30.000337
ORF1ab/nsp31200P1200SCcaTca11AY.5.40.000277
ORF1ab/nsp31200P1200SCcaTca11AY.550.000917
ORF1ab/nsp31200P1200SCcaTca11AY.580.000907
ORF1ab/nsp31200P1200SCcaTca11AY.70.000196
ORF1ab/nsp31200P1200SCcaTca11AY.700.000209
ORF1ab/nsp31200P1200SCcaTca11AY.730.000665
ORF1ab/nsp31200P1200SCcaTca11AY.760.004831
ORF1ab/nsp31200P1200SCcaTca11AY.770.001127
ORF1ab/nsp31200P1200SCcaTca11AY.840.000437
ORF1ab/nsp31200P1200SCcaTca11AY.9.10.000084
ORF1ab/nsp31200P1200SCcaTca11AY.99.20.000092
ORF1ab/nsp31200P1200SCcaTca11B.1.1.10.000327
ORF1ab/nsp31200P1200SCcaTca11B.1.1.1610.003534
ORF1ab/nsp31200P1200SCcaTca11B.1.1.2160.00089
ORF1ab/nsp31200P1200SCcaTca11B.1.1.2220.000204
ORF1ab/nsp31200P1200SCcaTca11B.1.1.2340.012048
ORF1ab/nsp31200P1200SCcaTca11B.1.1.250.000569
ORF1ab/nsp31200P1200SCcaTca11B.1.1.3020.002075
ORF1ab/nsp31200P1200SCcaTca11B.1.1.3050.003861
ORF1ab/nsp31200P1200SCcaTca11B.1.1.3170.000412
ORF1ab/nsp31200P1200SCcaTca11B.1.1.3980.003226
ORF1ab/nsp31200P1200SCcaTca11B.1.1.4480.002033
ORF1ab/nsp31200P1200SCcaTca11B.1.1.4640.001473
ORF1ab/nsp31200P1200SCcaTca11B.1.1.630.000386
ORF1ab/nsp31200P1200SCcaTca11B.1.110.30.000718
ORF1ab/nsp31200P1200SCcaTca11B.1.1460.004237
ORF1ab/nsp31200P1200SCcaTca11B.1.1590.012195
ORF1ab/nsp31200P1200SCcaTca11B.1.160.90.007194
ORF1ab/nsp31200P1200SCcaTca11B.1.177.110.001698
ORF1ab/nsp31200P1200SCcaTca11B.1.177.150.000631
ORF1ab/nsp31200P1200SCcaTca11B.1.177.210.000076
ORF1ab/nsp31200P1200SCcaTca11B.1.177.350.000691
ORF1ab/nsp31200P1200SCcaTca11B.1.177.560.000668
ORF1ab/nsp31200P1200SCcaTca11B.1.177.570.000281
ORF1ab/nsp31200P1200SCcaTca11B.1.177.580.001332
ORF1ab/nsp31200P1200SCcaTca11B.1.177.860.000183
ORF1ab/nsp31200P1200SCcaTca11B.1.177.870.000728
ORF1ab/nsp31200P1200SCcaTca11B.1.221.40.004167
ORF1ab/nsp31200P1200SCcaTca11B.1.2370.004975
ORF1ab/nsp31200P1200SCcaTca11B.1.258.110.000396
ORF1ab/nsp31200P1200SCcaTca11B.1.258.170.000104
ORF1ab/nsp31200P1200SCcaTca11B.1.3190.003049
ORF1ab/nsp31200P1200SCcaTca11B.1.3260.007576
ORF1ab/nsp31200P1200SCcaTca11B.1.3360.002439
ORF1ab/nsp31200P1200SCcaTca11B.1.3440.008197
ORF1ab/nsp31200P1200SCcaTca11B.1.351.20.000303
ORF1ab/nsp31200P1200SCcaTca11B.1.36.180.00042
ORF1ab/nsp31200P1200SCcaTca11B.1.36.290.000517
ORF1ab/nsp31200P1200SCcaTca11B.1.3620.001541
ORF1ab/nsp31200P1200SCcaTca11B.1.3660.004878
ORF1ab/nsp31200P1200SCcaTca11B.1.3690.000285
ORF1ab/nsp31200P1200SCcaTca11B.1.3980.002976
ORF1ab/nsp31200P1200SCcaTca11B.1.4090.000781
ORF1ab/nsp31200P1200SCcaTca11B.1.4630.008065
ORF1ab/nsp31200P1200SCcaTca11B.1.4740.001901
ORF1ab/nsp31200P1200SCcaTca11B.1.5170.000427
ORF1ab/nsp31200P1200SCcaTca11B.1.5230.002451
ORF1ab/nsp31200P1200SCcaTca11B.1.5640.000426
ORF1ab/nsp31200P1200SCcaTca11B.1.5760.000907
ORF1ab/nsp31200P1200SCcaTca11B.1.5820.000491
ORF1ab/nsp31200P1200SCcaTca11B.1.617.10.000129
ORF1ab/nsp31200P1200SCcaTca11B.1.6310.003367
ORF1ab/nsp31200P1200SCcaTca11B.1.6340.003425
ORF1ab/nsp31200P1200SCcaTca11B.1.810.021277
ORF1ab/nsp31200P1200SCcaTca11B.1.9.50.005682
ORF1ab/nsp31200P1200SCcaTca11B.270.015385
ORF1ab/nsp31200P1200SCcaTca11B.30.000831
ORF1ab/nsp31200P1200SCcaTca11B.60.00091
ORF1ab/nsp31200P1200SCcaTca11B.6.60.000889
ORF1ab/nsp31200P1200SCcaTca11C.270.018519
ORF1ab/nsp31200P1200SCcaTca11C.300.001727
ORF1ab/nsp31200P1200SCcaTca11C.330.058824
ORF1ab/nsp31200P1200SCcaTca11C.360.000911
ORF1ab/nsp31200P1200SCcATcG11P.1.10.000318
ORF1ab/nsp31200P1200SCcaTca11Q.10.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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