CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = P1200S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31200P1200SP2018SnonsynCcaTca614156910.9267226317-6319
ORF1ab/nsp31200P1200SP2018SnonsynCcATcG61414500.0732786317-6319

Details of the mutation P1200S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31200P1200SCcaTca56916141All0.001088
ORF1ab/nsp31200P1200SCcATcG4506141All0.000086
ORF1ab/nsp31200P1200SCcaTca17511751B.1.1.70.001568
ORF1ab/nsp31200P1200SCcaTca988988B.1.177.60.964844
ORF1ab/nsp31200P1200SCcaTca350350AY.40.000545
ORF1ab/nsp31200P1200SCcaTca323323B.1.36.160.460114
ORF1ab/nsp31200P1200SCcATcG270270P.1.130.242588
ORF1ab/nsp31200P1200SCcaTca221221AY.440.001345
ORF1ab/nsp31200P1200SCcaTca216216B.1.617.20.000813
ORF1ab/nsp31200P1200SCcaTca128128B.1.20.001127
ORF1ab/nsp31200P1200SCcaTca127127AY.430.000563
ORF1ab/nsp31200P1200SCcaTca124124AY.420.004989
ORF1ab/nsp31200P1200SCcATcG9898P.10.001544
ORF1ab/nsp31200P1200SCcaTca8282AY.250.000493
ORF1ab/nsp31200P1200SCcaTca8282B.1.1.1410.16499
ORF1ab/nsp31200P1200SCcaTca7676AY.1030.000472
ORF1ab/nsp31200P1200SCcaTca7676AY.600.071295
ORF1ab/nsp31200P1200SCcaTca6868AY.30.000676
ORF1ab/nsp31200P1200SCcaTca6363B.1.1770.00083
ORF1ab/nsp31200P1200SCcaTca5959AY.4.20.00128
ORF1ab/nsp31200P1200SCcATcG5656P.1.150.013011
ORF1ab/nsp31200P1200SCcaTca5050B.1.177.160.033223
ORF1ab/nsp31200P1200SCcaTca4545B.10.000412
ORF1ab/nsp31200P1200SCcaTca4040B.1.2340.005278
ORF1ab/nsp31200P1200SCcaTca3737B.1.10.000671
ORF1ab/nsp31200P1200SCcaTca3535B.1.4290.000824
ORF1ab/nsp31200P1200SCcaTca3434AY.50.000702
ORF1ab/nsp31200P1200SCcaTca3030AY.260.000849
ORF1ab/nsp31200P1200SCcaTca2929AY.1200.001078
ORF1ab/nsp31200P1200SCcaTca2929B.1.2210.00206
ORF1ab/nsp31200P1200SCcaTca2727AY.390.000667
ORF1ab/nsp31200P1200SCcaTca2121B.1.6300.109948
ORF1ab/nsp31200P1200SCcaTca1919AY.200.000738
ORF1ab/nsp31200P1200SCcaTca1818B.1.5260.000423
ORF1ab/nsp31200P1200SCcATcG1818P.1.140.00086
ORF1ab/nsp31200P1200SCcaTca1717AY.1020.000451
ORF1ab/nsp31200P1200SCcaTca1717B.1.5250.001924
ORF1ab/nsp31200P1200SCcaTca1616AY.290.000252
ORF1ab/nsp31200P1200SCcaTca1616AY.330.001068
ORF1ab/nsp31200P1200SCcaTca1515B.1.2580.000998
ORF1ab/nsp31200P1200SCcaTca1414B.1.1600.000437
ORF1ab/nsp31200P1200SCcaTca1313AY.300.005144
ORF1ab/nsp31200P1200SCcaTca1313B.1.3510.000386
ORF1ab/nsp31200P1200SCcaTca1212AY.39.10.000475
ORF1ab/nsp31200P1200SCcaTca1111AY.1000.000506
ORF1ab/nsp31200P1200SCcaTca1111AY.1040.021825
ORF1ab/nsp31200P1200SCcaTca1010AY.7.10.001127
ORF1ab/nsp31200P1200SCcaTca1010B.1.3770.045662
ORF1ab/nsp31200P1200SCcaTca99AY.3.10.000767
ORF1ab/nsp31200P1200SCcaTca99AY.610.000943
ORF1ab/nsp31200P1200SCcaTca99B.1.177.320.012146
ORF1ab/nsp31200P1200SCcaTca99B.1.4270.000454
ORF1ab/nsp31200P1200SCcaTca99C.370.001045
ORF1ab/nsp31200P1200SCcaTca88AY.1070.003728
ORF1ab/nsp31200P1200SCcaTca88AY.60.000329
ORF1ab/nsp31200P1200SCcaTca88B.1.2430.000557
ORF1ab/nsp31200P1200SCcaTca88B.1.5960.000697
ORF1ab/nsp31200P1200SCcaTca88B.1.9.40.04908
ORF1ab/nsp31200P1200SCcaTca77AY.9.20.000257
ORF1ab/nsp31200P1200SCcaTca77B.1.177.120.001062
ORF1ab/nsp31200P1200SCcaTca77D.20.000525
ORF1ab/nsp31200P1200SCcaTca66AY.110.008032
ORF1ab/nsp31200P1200SCcaTca66AY.1190.000212
ORF1ab/nsp31200P1200SCcaTca66AY.4.2.10.000894
ORF1ab/nsp31200P1200SCcaTca66AY.450.00073
ORF1ab/nsp31200P1200SCcaTca66B.1.1.390.003058
ORF1ab/nsp31200P1200SCcaTca66B.1.1.5190.000238
ORF1ab/nsp31200P1200SCcaTca55AY.460.00052
ORF1ab/nsp31200P1200SCcaTca55AY.750.00028
ORF1ab/nsp31200P1200SCcaTca55R.10.00045
ORF1ab/nsp31200P1200SCcaTca44AY.1170.000338
ORF1ab/nsp31200P1200SCcaTca44AY.540.000381
ORF1ab/nsp31200P1200SCcaTca44B.1.1.700.001364
ORF1ab/nsp31200P1200SCcaTca44B.1.177.810.000757
ORF1ab/nsp31200P1200SCcaTca44B.1.5670.013333
ORF1ab/nsp31200P1200SCcaTca44P.20.000747
ORF1ab/nsp31200P1200SCcaTca33A.10.000846
ORF1ab/nsp31200P1200SCcaTca33AY.1050.001929
ORF1ab/nsp31200P1200SCcaTca33AY.1100.000338
ORF1ab/nsp31200P1200SCcaTca33AY.160.001139
ORF1ab/nsp31200P1200SCcaTca33AY.340.000291
ORF1ab/nsp31200P1200SCcaTca33AY.780.004622
ORF1ab/nsp31200P1200SCcaTca33B.1.1.1700.003741
ORF1ab/nsp31200P1200SCcaTca33B.1.1.280.000934
ORF1ab/nsp31200P1200SCcaTca33B.1.177.650.001996
ORF1ab/nsp31200P1200SCcaTca33B.1.221.30.0025
ORF1ab/nsp31200P1200SCcaTca33B.1.36.310.005254
ORF1ab/nsp31200P1200SCcaTca33B.1.5650.002431
ORF1ab/nsp31200P1200SCcaTca33N.50.0053
ORF1ab/nsp31200P1200SCcATcG33P.1.70.000958
ORF1ab/nsp31200P1200SCcaTca33Q.80.000495
ORF1ab/nsp31200P1200SCcaTca22AY.1180.000125
ORF1ab/nsp31200P1200SCcaTca22AY.1210.000271
ORF1ab/nsp31200P1200SCcaTca22AY.23.10.000835
ORF1ab/nsp31200P1200SCcaTca22AY.630.000774
ORF1ab/nsp31200P1200SCcaTca22AY.800.002257
ORF1ab/nsp31200P1200SCcaTca22AY.890.009804
ORF1ab/nsp31200P1200SCcaTca22AY.90.000135
ORF1ab/nsp31200P1200SCcaTca22AY.910.001461
ORF1ab/nsp31200P1200SCcaTca22AY.980.000158
ORF1ab/nsp31200P1200SCcaTca22B0.000256
ORF1ab/nsp31200P1200SCcaTca22B.1.1.2140.000111
ORF1ab/nsp31200P1200SCcaTca22B.1.1.2190.01
ORF1ab/nsp31200P1200SCcaTca22B.1.1.3060.000877
ORF1ab/nsp31200P1200SCcaTca22B.1.1.330.000842
ORF1ab/nsp31200P1200SCcaTca22B.1.1.570.022989
ORF1ab/nsp31200P1200SCcaTca22B.1.1470.001512
ORF1ab/nsp31200P1200SCcaTca22B.1.1950.01005
ORF1ab/nsp31200P1200SCcaTca22B.1.258.20.009009
ORF1ab/nsp31200P1200SCcaTca22B.1.3060.011429
ORF1ab/nsp31200P1200SCcaTca22B.1.3110.000549
ORF1ab/nsp31200P1200SCcaTca22B.1.360.000292
ORF1ab/nsp31200P1200SCcaTca22B.1.36.220.002415
ORF1ab/nsp31200P1200SCcaTca22B.1.438.10.000215
ORF1ab/nsp31200P1200SCcaTca22B.1.4690.00722
ORF1ab/nsp31200P1200SCcaTca22B.1.6210.000177
ORF1ab/nsp31200P1200SCcaTca22B.1.6230.001073
ORF1ab/nsp31200P1200SCcaTca22B.1.6370.000146
ORF1ab/nsp31200P1200SCcaTca22B.1.90.012346
ORF1ab/nsp31200P1200SCcATcG22P.1.170.000324
ORF1ab/nsp31200P1200SCcATcG22P.1.17.10.00175
ORF1ab/nsp31200P1200SCcaTca22Q.40.00091
ORF1ab/nsp31200P1200SCcaTca11A.20.000662
ORF1ab/nsp31200P1200SCcaTca11A.2.40.003367
ORF1ab/nsp31200P1200SCcaTca11AP.10.001502
ORF1ab/nsp31200P1200SCcaTca11AU.10.001266
ORF1ab/nsp31200P1200SCcaTca11AY.100.00053
ORF1ab/nsp31200P1200SCcaTca11AY.1130.000142
ORF1ab/nsp31200P1200SCcaTca11AY.1150.005208
ORF1ab/nsp31200P1200SCcaTca11AY.130.000161
ORF1ab/nsp31200P1200SCcaTca11AY.190.00114
ORF1ab/nsp31200P1200SCcaTca11AY.240.000431
ORF1ab/nsp31200P1200SCcaTca11AY.380.000499
ORF1ab/nsp31200P1200SCcaTca11AY.470.000031
ORF1ab/nsp31200P1200SCcaTca11AY.5.30.000337
ORF1ab/nsp31200P1200SCcaTca11AY.5.40.000277
ORF1ab/nsp31200P1200SCcaTca11AY.550.000917
ORF1ab/nsp31200P1200SCcaTca11AY.580.000907
ORF1ab/nsp31200P1200SCcaTca11AY.70.000196
ORF1ab/nsp31200P1200SCcaTca11AY.700.000209
ORF1ab/nsp31200P1200SCcaTca11AY.730.000665
ORF1ab/nsp31200P1200SCcaTca11AY.760.004831
ORF1ab/nsp31200P1200SCcaTca11AY.770.001127
ORF1ab/nsp31200P1200SCcaTca11AY.840.000437
ORF1ab/nsp31200P1200SCcaTca11AY.9.10.000084
ORF1ab/nsp31200P1200SCcaTca11AY.99.20.000092
ORF1ab/nsp31200P1200SCcaTca11B.1.1.10.000327
ORF1ab/nsp31200P1200SCcaTca11B.1.1.1610.003534
ORF1ab/nsp31200P1200SCcaTca11B.1.1.2160.00089
ORF1ab/nsp31200P1200SCcaTca11B.1.1.2220.000204
ORF1ab/nsp31200P1200SCcaTca11B.1.1.2340.012048
ORF1ab/nsp31200P1200SCcaTca11B.1.1.250.000569
ORF1ab/nsp31200P1200SCcaTca11B.1.1.3020.002075
ORF1ab/nsp31200P1200SCcaTca11B.1.1.3050.003861
ORF1ab/nsp31200P1200SCcaTca11B.1.1.3170.000412
ORF1ab/nsp31200P1200SCcaTca11B.1.1.3980.003226
ORF1ab/nsp31200P1200SCcaTca11B.1.1.4480.002033
ORF1ab/nsp31200P1200SCcaTca11B.1.1.4640.001473
ORF1ab/nsp31200P1200SCcaTca11B.1.1.630.000386
ORF1ab/nsp31200P1200SCcaTca11B.1.110.30.000718
ORF1ab/nsp31200P1200SCcaTca11B.1.1460.004237
ORF1ab/nsp31200P1200SCcaTca11B.1.1590.012195
ORF1ab/nsp31200P1200SCcaTca11B.1.160.90.007194
ORF1ab/nsp31200P1200SCcaTca11B.1.177.110.001698
ORF1ab/nsp31200P1200SCcaTca11B.1.177.150.000631
ORF1ab/nsp31200P1200SCcaTca11B.1.177.210.000076
ORF1ab/nsp31200P1200SCcaTca11B.1.177.350.000691
ORF1ab/nsp31200P1200SCcaTca11B.1.177.560.000668
ORF1ab/nsp31200P1200SCcaTca11B.1.177.570.000281
ORF1ab/nsp31200P1200SCcaTca11B.1.177.580.001332
ORF1ab/nsp31200P1200SCcaTca11B.1.177.860.000183
ORF1ab/nsp31200P1200SCcaTca11B.1.177.870.000728
ORF1ab/nsp31200P1200SCcaTca11B.1.221.40.004167
ORF1ab/nsp31200P1200SCcaTca11B.1.2370.004975
ORF1ab/nsp31200P1200SCcaTca11B.1.258.110.000396
ORF1ab/nsp31200P1200SCcaTca11B.1.258.170.000104
ORF1ab/nsp31200P1200SCcaTca11B.1.3190.003049
ORF1ab/nsp31200P1200SCcaTca11B.1.3260.007576
ORF1ab/nsp31200P1200SCcaTca11B.1.3360.002439
ORF1ab/nsp31200P1200SCcaTca11B.1.3440.008197
ORF1ab/nsp31200P1200SCcaTca11B.1.351.20.000303
ORF1ab/nsp31200P1200SCcaTca11B.1.36.180.00042
ORF1ab/nsp31200P1200SCcaTca11B.1.36.290.000517
ORF1ab/nsp31200P1200SCcaTca11B.1.3620.001541
ORF1ab/nsp31200P1200SCcaTca11B.1.3660.004878
ORF1ab/nsp31200P1200SCcaTca11B.1.3690.000285
ORF1ab/nsp31200P1200SCcaTca11B.1.3980.002976
ORF1ab/nsp31200P1200SCcaTca11B.1.4090.000781
ORF1ab/nsp31200P1200SCcaTca11B.1.4630.008065
ORF1ab/nsp31200P1200SCcaTca11B.1.4740.001901
ORF1ab/nsp31200P1200SCcaTca11B.1.5170.000427
ORF1ab/nsp31200P1200SCcaTca11B.1.5230.002451
ORF1ab/nsp31200P1200SCcaTca11B.1.5640.000426
ORF1ab/nsp31200P1200SCcaTca11B.1.5760.000907
ORF1ab/nsp31200P1200SCcaTca11B.1.5820.000491
ORF1ab/nsp31200P1200SCcaTca11B.1.617.10.000129
ORF1ab/nsp31200P1200SCcaTca11B.1.6310.003367
ORF1ab/nsp31200P1200SCcaTca11B.1.6340.003425
ORF1ab/nsp31200P1200SCcaTca11B.1.810.021277
ORF1ab/nsp31200P1200SCcaTca11B.1.9.50.005682
ORF1ab/nsp31200P1200SCcaTca11B.270.015385
ORF1ab/nsp31200P1200SCcaTca11B.30.000831
ORF1ab/nsp31200P1200SCcaTca11B.60.00091
ORF1ab/nsp31200P1200SCcaTca11B.6.60.000889
ORF1ab/nsp31200P1200SCcaTca11C.270.018519
ORF1ab/nsp31200P1200SCcaTca11C.300.001727
ORF1ab/nsp31200P1200SCcaTca11C.330.058824
ORF1ab/nsp31200P1200SCcaTca11C.360.000911
ORF1ab/nsp31200P1200SCcATcG11P.1.10.000318
ORF1ab/nsp31200P1200SCcaTca11Q.10.000126