CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1200 | P1200P | P2018P | syn | ccA | ccG | 113842 | 113732 | 0.999034 | 6317-6319 |
ORF1ab/nsp3 | 1200 | P1200P | P2018P | syn | ccA | ccT | 113842 | 94 | 0.000825706 | 6317-6319 |
ORF1ab/nsp3 | 1200 | P1200P | P2018P | syn | ccA | ccC | 113842 | 16 | 0.000140546 | 6317-6319 |
Details of the mutation P1200P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 113732 | 113842 | All | 0.021753 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccT | 94 | 113842 | All | 0.000018 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccC | 16 | 113842 | All | 0.000003 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 62399 | 62457 | P.1 | 0.983033 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccT | 58 | 62457 | P.1 | 0.000914 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 20789 | 20791 | P.1.14 | 0.993738 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccT | 2 | 20791 | P.1.14 | 0.000096 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 6120 | 6122 | P.1.17 | 0.989971 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccT | 1 | 6122 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccC | 1 | 6122 | P.1.17 | 0.000162 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 4166 | 4166 | P.1.15 | 0.967937 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 3689 | 3689 | P.1.10 | 0.994072 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 3110 | 3110 | P.1.7 | 0.992976 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 2980 | 2980 | P.1.1 | 0.946633 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 2418 | 2418 | P.1.16 | 0.904602 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1905 | 1905 | P.1.12 | 0.922072 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1139 | 1139 | P.1.17.1 | 0.9965 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1023 | 1023 | P.1.4 | 0.999023 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 858 | 861 | P.1.2 | 0.991908 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccT | 3 | 861 | P.1.2 | 0.003468 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 753 | 753 | P.1.13 | 0.67655 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 513 | 513 | P.1.6 | 0.998054 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 414 | 424 | B.1.1.7 | 0.000371 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccC | 7 | 424 | B.1.1.7 | 0.000006 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccT | 3 | 424 | B.1.1.7 | 0.000003 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 322 | 323 | B.1.1.28 | 0.100218 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccT | 1 | 323 | B.1.1.28 | 0.000311 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 209 | 209 | P.1.8 | 1 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 207 | 207 | P.1.9 | 0.995192 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 108 | 108 | P.1.10.1 | 0.878049 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 98 | 98 | P.1.11 | 1 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 89 | 91 | B.1 | 0.000815 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccT | 1 | 91 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccC | 1 | 91 | B.1 | 0.000009 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 79 | 79 | B.1.1 | 0.001433 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 48 | 48 | C.37 | 0.005571 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 29 | 29 | P.1.3 | 1 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 24 | 24 | P.1.10.2 | 1 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 22 | 23 | AY.44 | 0.000134 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccC | 1 | 23 | AY.44 | 0.000006 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 19 | 21 | B.1.617.2 | 0.000072 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccC | 1 | 21 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccT | 1 | 21 | B.1.617.2 | 0.000004 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 16 | 16 | B.1.1.528 | 0.076923 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 13 | 13 | P.1.5 | 1 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 7 | 12 | B.1.621 | 0.00062 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccT | 5 | 12 | B.1.621 | 0.000443 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 11 | 11 | AY.43 | 0.000049 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 11 | 11 | C.37.1 | 0.028796 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 9 | 9 | B.1.429 | 0.000212 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 7 | 8 | P.2 | 0.001306 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccT | 1 | 8 | P.2 | 0.000187 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 7 | 7 | A.2.5 | 0.003493 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 6 | 7 | AY.25 | 0.000036 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccT | 1 | 7 | AY.25 | 0.000006 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 5 | 7 | AY.4 | 0.000008 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccC | 1 | 7 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccT | 1 | 7 | AY.4 | 0.000002 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccT | 5 | 6 | AY.20 | 0.000194 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 6 | AY.20 | 0.000039 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 4 | 4 | AY.39 | 0.000099 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 4 | 4 | B | 0.000511 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 4 | 4 | B.1.1.485 | 0.066667 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 4 | 4 | B.1.311 | 0.001098 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccC | 4 | 4 | B.1.396 | 0.002823 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 3 | 3 | AY.102 | 0.00008 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 3 | 3 | AY.23 | 0.000209 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccT | 3 | 3 | AY.3 | 0.00003 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 3 | 3 | AY.33 | 0.0002 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 3 | 3 | AY.47 | 0.000093 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 2 | 3 | AY.75 | 0.000112 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccT | 1 | 3 | AY.75 | 0.000056 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 3 | 3 | B.1.1.161 | 0.010601 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 3 | 3 | B.1.1.372 | 0.002066 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 3 | 3 | B.1.2 | 0.000026 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 3 | 3 | B.1.596 | 0.000261 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 3 | 3 | B.1.623 | 0.001609 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 2 | 2 | AY.100 | 0.000092 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 2 | 2 | AY.75.1 | 0.000361 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 2 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccT | 1 | 2 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 2 | 2 | B.1.1.348 | 0.001592 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 2 | 2 | B.1.1.507 | 0.017391 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 2 | 2 | B.1.1.54 | 0.006042 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 2 | 2 | B.1.177 | 0.000026 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 2 | 2 | B.1.324 | 0.00321 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 2 | 2 | B.1.526 | 0.000047 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 2 | 2 | B.1.533 | 0.019231 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 2 | 2 | C.39 | 0.037736 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccT | 1 | 1 | AY.103 | 0.000006 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | AY.116 | 0.000287 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | AY.34 | 0.000097 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | AY.36 | 0.000148 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccT | 1 | 1 | AY.4.2 | 0.000022 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | AY.4.2.1 | 0.000149 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | AY.42 | 0.00004 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | AY.45 | 0.000122 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | AY.5.2 | 0.002463 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | AY.5.3 | 0.000337 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | AY.50 | 0.000799 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccT | 1 | 1 | AY.61 | 0.000105 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | AY.9.2 | 0.000037 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | AY.98.1 | 0.000048 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | B.1.1.186 | 0.003436 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | B.1.1.220 | 0.001859 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | B.1.1.369 | 0.000446 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | B.1.1.378 | 0.007299 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | B.1.1.50 | 0.000679 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | B.1.1.519 | 0.00004 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccT | 1 | 1 | B.1.1.70 | 0.000341 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | B.1.177.31 | 0.011494 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | B.1.177.7 | 0.000165 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | B.1.179 | 0.003759 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | B.1.214 | 0.003663 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | B.1.214.2 | 0.0006 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | B.1.221 | 0.000071 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccT | 1 | 1 | B.1.234 | 0.000132 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | B.1.241 | 0.000812 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | B.1.399 | 0.001934 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | B.1.404 | 0.001302 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccT | 1 | 1 | B.1.416.1 | 0.001563 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | B.1.427 | 0.00005 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | B.1.433 | 0.003195 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | B.1.517 | 0.000427 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | B.1.620 | 0.000946 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | B.1.631 | 0.003367 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | N.1 | 0.016949 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | N.4 | 0.004255 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | N.6 | 0.007092 |
ORF1ab/nsp3 | 1200 | P1200P | ccA | ccG | 1 | 1 | Q.1 | 0.000126 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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