CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = P1159L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31159P1159LP1977LnonsyncCccTc463046190.9976246194-6196
ORF1ab/nsp31159P1159LP1977LnonsyncCCcTT463090.001943846194-6196
ORF1ab/nsp31159P1159LP1977LnonsyncCCcTA463010.0002159836194-6196
ORF1ab/nsp31159P1159LP1977LnonsyncCCcTG463010.0002159836194-6196

Details of the mutation P1159L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31159P1159LcCccTc46194630All0.000883
ORF1ab/nsp31159P1159LcCCcTT94630All0.000002
ORF1ab/nsp31159P1159LcCCcTG14630All0
ORF1ab/nsp31159P1159LcCCcTA14630All0
ORF1ab/nsp31159P1159LcCccTc13491352AY.1030.008376
ORF1ab/nsp31159P1159LcCCcTT31352AY.1030.000019
ORF1ab/nsp31159P1159LcCccTc671671B.1.1.70.000601
ORF1ab/nsp31159P1159LcCccTc448448B.1.617.20.001687
ORF1ab/nsp31159P1159LcCccTc273273AY.5.40.07554
ORF1ab/nsp31159P1159LcCccTc273273B.1.1770.003595
ORF1ab/nsp31159P1159LcCccTc210210B.1.220.27668
ORF1ab/nsp31159P1159LcCccTc201201AY.40.000313
ORF1ab/nsp31159P1159LcCccTc138138B.1.5750.041869
ORF1ab/nsp31159P1159LcCccTc100100B.1.4290.002353
ORF1ab/nsp31159P1159LcCccTc6767B.1.20.00059
ORF1ab/nsp31159P1159LcCccTc6565AY.260.00184
ORF1ab/nsp31159P1159LcCccTc5858AY.980.004582
ORF1ab/nsp31159P1159LcCccTc5757B.1.3110.015651
ORF1ab/nsp31159P1159LcCccTc4848AY.250.000289
ORF1ab/nsp31159P1159LcCccTc4242B.10.000385
ORF1ab/nsp31159P1159LcCccTc3939AY.440.000237
ORF1ab/nsp31159P1159LcCccTc3737B.1.6200.035005
ORF1ab/nsp31159P1159LcCccTc3232B.1.22.11
ORF1ab/nsp31159P1159LcCccTc3131AY.98.10.001501
ORF1ab/nsp31159P1159LcCccTc2828AY.350.006525
ORF1ab/nsp31159P1159LcCccTc2223AY.430.000097
ORF1ab/nsp31159P1159LcCCcTT123AY.430.000004
ORF1ab/nsp31159P1159LcCccTc2121B.1.1600.000655
ORF1ab/nsp31159P1159LcCccTc1819B.1.10.000327
ORF1ab/nsp31159P1159LcCCcTT119B.1.10.000018
ORF1ab/nsp31159P1159LcCccTc1818B.1.3690.005134
ORF1ab/nsp31159P1159LcCccTc1818B.1.5260.000423
ORF1ab/nsp31159P1159LcCccTc1717AY.30.000169
ORF1ab/nsp31159P1159LcCccTc1616Q.80.002639
ORF1ab/nsp31159P1159LcCccTc1515P.10.000236
ORF1ab/nsp31159P1159LcCccTc1414AY.540.001335
ORF1ab/nsp31159P1159LcCccTc1414B.1.6370.001023
ORF1ab/nsp31159P1159LcCccTc1313B.1.1.2540.146067
ORF1ab/nsp31159P1159LcCccTc1111AY.1200.000409
ORF1ab/nsp31159P1159LcCccTc1010B.1.160.200.089286
ORF1ab/nsp31159P1159LcCccTc99AY.1180.000564
ORF1ab/nsp31159P1159LcCccTc99AY.450.001095
ORF1ab/nsp31159P1159LcCccTc88AY.390.000198
ORF1ab/nsp31159P1159LcCccTc77AY.1060.002344
ORF1ab/nsp31159P1159LcCccTc77AY.320.003727
ORF1ab/nsp31159P1159LcCccTc67B.1.2210.000426
ORF1ab/nsp31159P1159LcCCcTA17B.1.2210.000071
ORF1ab/nsp31159P1159LcCccTc77B.1.258.110.002774
ORF1ab/nsp31159P1159LcCccTc66AY.1190.000212
ORF1ab/nsp31159P1159LcCccTc66AY.230.000418
ORF1ab/nsp31159P1159LcCccTc66AY.9.20.00022
ORF1ab/nsp31159P1159LcCccTc66B.1.5760.00544
ORF1ab/nsp31159P1159LcCccTc66C.370.000696
ORF1ab/nsp31159P1159LcCccTc55AE.80.002445
ORF1ab/nsp31159P1159LcCccTc240.111111
ORF1ab/nsp31159P1159LcCCcTT140.055556
ORF1ab/nsp31159P1159LcCCcTG140.055556
ORF1ab/nsp31159P1159LcCccTc44AY.200.000155
ORF1ab/nsp31159P1159LcCccTc44AY.50.000083
ORF1ab/nsp31159P1159LcCccTc44AY.600.003752
ORF1ab/nsp31159P1159LcCccTc44B.1.1.500.002716
ORF1ab/nsp31159P1159LcCccTc44D.20.0003
ORF1ab/nsp31159P1159LcCccTc33AY.1000.000138
ORF1ab/nsp31159P1159LcCccTc33AY.1020.00008
ORF1ab/nsp31159P1159LcCccTc33AY.1090.002219
ORF1ab/nsp31159P1159LcCccTc33AY.270.000194
ORF1ab/nsp31159P1159LcCccTc33AY.3.10.000256
ORF1ab/nsp31159P1159LcCccTc33AY.39.10.000119
ORF1ab/nsp31159P1159LcCccTc33AY.4.20.000065
ORF1ab/nsp31159P1159LcCccTc33AY.4.2.10.000447
ORF1ab/nsp31159P1159LcCccTc33AY.46.40.000494
ORF1ab/nsp31159P1159LcCccTc33AY.920.000862
ORF1ab/nsp31159P1159LcCccTc33B.1.2430.000209
ORF1ab/nsp31159P1159LcCccTc33B.1.360.000438
ORF1ab/nsp31159P1159LcCccTc33B.1.4000.001287
ORF1ab/nsp31159P1159LcCccTc33P.1.140.000143
ORF1ab/nsp31159P1159LcCccTc33P.20.00056
ORF1ab/nsp31159P1159LcCccTc22AY.1210.000271
ORF1ab/nsp31159P1159LcCCcTT22AY.330.000134
ORF1ab/nsp31159P1159LcCccTc22AY.60.000082
ORF1ab/nsp31159P1159LcCccTc22AY.610.00021
ORF1ab/nsp31159P1159LcCccTc22AY.690.000373
ORF1ab/nsp31159P1159LcCccTc22AY.740.000231
ORF1ab/nsp31159P1159LcCccTc22AY.750.000112
ORF1ab/nsp31159P1159LcCccTc22AY.850.000854
ORF1ab/nsp31159P1159LcCccTc22AY.9.10.000167
ORF1ab/nsp31159P1159LcCccTc22B0.000256
ORF1ab/nsp31159P1159LcCccTc22B.1.1.3070.005063
ORF1ab/nsp31159P1159LcCccTc22B.1.1.4200.002012
ORF1ab/nsp31159P1159LcCccTc22B.1.1.5190.000079
ORF1ab/nsp31159P1159LcCccTc22B.1.2130.029851
ORF1ab/nsp31159P1159LcCccTc22B.1.2580.000133
ORF1ab/nsp31159P1159LcCccTc22B.1.3510.000059
ORF1ab/nsp31159P1159LcCccTc22B.1.36.270.001527
ORF1ab/nsp31159P1159LcCccTc22B.1.4080.00738
ORF1ab/nsp31159P1159LcCccTc22B.1.6210.000177
ORF1ab/nsp31159P1159LcCccTc22Q.10.000253
ORF1ab/nsp31159P1159LcCccTc11A.210.00277
ORF1ab/nsp31159P1159LcCccTc11AY.1070.000466
ORF1ab/nsp31159P1159LcCccTc11AY.1160.000287
ORF1ab/nsp31159P1159LcCccTc11AY.1170.000085
ORF1ab/nsp31159P1159LcCccTc11AY.290.000016
ORF1ab/nsp31159P1159LcCccTc11AY.34.10.00051
ORF1ab/nsp31159P1159LcCccTc11AY.460.000104
ORF1ab/nsp31159P1159LcCccTc11AY.46.20.000635
ORF1ab/nsp31159P1159LcCccTc11AY.5.30.000337
ORF1ab/nsp31159P1159LcCccTc11AY.500.000799
ORF1ab/nsp31159P1159LcCccTc11AY.530.000288
ORF1ab/nsp31159P1159LcCccTc11AY.730.000665
ORF1ab/nsp31159P1159LcCccTc11AY.820.001357
ORF1ab/nsp31159P1159LcCccTc11AY.880.000884
ORF1ab/nsp31159P1159LcCccTc11AY.900.000684
ORF1ab/nsp31159P1159LcCccTc11B.1.1.10.000327
ORF1ab/nsp31159P1159LcCccTc11B.1.1.1010.01
ORF1ab/nsp31159P1159LcCccTc11B.1.1.1590.004673
ORF1ab/nsp31159P1159LcCccTc11B.1.1.330.000421
ORF1ab/nsp31159P1159LcCccTc11B.1.1.3590.027778
ORF1ab/nsp31159P1159LcCccTc11B.1.1.3750.011905
ORF1ab/nsp31159P1159LcCccTc11B.1.1.4350.034483
ORF1ab/nsp31159P1159LcCccTc11B.1.1.460.004367
ORF1ab/nsp31159P1159LcCCcTT11B.1.1.4860.001577
ORF1ab/nsp31159P1159LcCccTc11B.1.110.30.000718
ORF1ab/nsp31159P1159LcCccTc11B.1.1460.004237
ORF1ab/nsp31159P1159LcCccTc11B.1.160.280.002924
ORF1ab/nsp31159P1159LcCccTc11B.1.177.100.000878
ORF1ab/nsp31159P1159LcCccTc11B.1.177.320.00135
ORF1ab/nsp31159P1159LcCccTc11B.1.177.450.000381
ORF1ab/nsp31159P1159LcCccTc11B.1.177.570.000281
ORF1ab/nsp31159P1159LcCccTc11B.1.177.70.000165
ORF1ab/nsp31159P1159LcCccTc11B.1.214.20.0006
ORF1ab/nsp31159P1159LcCccTc11B.1.3380.008621
ORF1ab/nsp31159P1159LcCccTc11B.1.36.180.00042
ORF1ab/nsp31159P1159LcCccTc11B.1.36.310.001751
ORF1ab/nsp31159P1159LcCccTc11B.1.4030.003268
ORF1ab/nsp31159P1159LcCccTc11B.1.4040.001302
ORF1ab/nsp31159P1159LcCccTc11B.1.5250.000113
ORF1ab/nsp31159P1159LcCccTc11B.1.617.10.000129
ORF1ab/nsp31159P1159LcCccTc11B.1.6190.000871
ORF1ab/nsp31159P1159LcCccTc11B.1.6230.000536
ORF1ab/nsp31159P1159LcCccTc11B.1.6280.000352
ORF1ab/nsp31159P1159LcCccTc11B.290.003509
ORF1ab/nsp31159P1159LcCccTc11B.300.014706
ORF1ab/nsp31159P1159LcCccTc11B.400.000364
ORF1ab/nsp31159P1159LcCccTc11C.350.000774
ORF1ab/nsp31159P1159LcCccTc11C.360.000911
ORF1ab/nsp31159P1159LcCccTc11P.1.160.000374
ORF1ab/nsp31159P1159LcCccTc11P.1.70.000319
ORF1ab/nsp31159P1159LcCccTc11P.30.001595
ORF1ab/nsp31159P1159LcCccTc11P.70.004367
ORF1ab/nsp31159P1159LcCccTc11R.10.00009