CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
ORF1ab/nsp3 | 1103 | P1103S | P1921S | nonsyn | Cca | Tca | 8603 | 8603 | 1 | 6026-6028 |
Details of the mutation P1103S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 8603 | 8603 | All | 0.001645 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1527 | 1527 | AY.4 | 0.002377 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1436 | 1436 | B.1.1.7 | 0.001286 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1234 | 1234 | AY.26 | 0.034935 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 396 | 396 | AY.25 | 0.002382 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 387 | 387 | B.1.526 | 0.009096 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 361 | 361 | AY.43 | 0.001599 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 285 | 285 | B.1.497 | 0.089707 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 154 | 154 | B.1.177.9 | 0.20506 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 151 | 151 | B.1.617.2 | 0.000569 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 150 | 150 | B.1.1 | 0.002721 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 145 | 145 | AY.39 | 0.003583 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 115 | 115 | B.1.160 | 0.003587 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 113 | 113 | B.1.177 | 0.001488 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 96 | 96 | B.1 | 0.000879 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 95 | 95 | P.1 | 0.001497 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 92 | 92 | B.1.2 | 0.00081 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 91 | 91 | AY.103 | 0.000565 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 91 | 91 | B.1.595.4 | 0.664234 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 67 | 67 | AY.44 | 0.000408 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 67 | 67 | AY.5 | 0.001383 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 61 | 61 | B.1.1.519 | 0.002422 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 56 | 56 | B.1.595 | 0.014614 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 53 | 53 | B.1.36 | 0.007733 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 51 | 51 | B.1.1.70 | 0.017394 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 47 | 47 | AY.3 | 0.000467 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 46 | 46 | B.1.1.326 | 0.080986 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 43 | 43 | AY.4.2 | 0.000933 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 38 | 38 | B.1.1.289 | 0.079167 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 36 | 36 | AY.27 | 0.00233 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 36 | 36 | AY.80 | 0.040632 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 35 | 35 | B.1.1.369 | 0.015618 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 35 | 35 | B.1.429 | 0.000824 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 30 | 30 | AY.102 | 0.000795 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 24 | 24 | C.37 | 0.002786 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 23 | 23 | AY.47 | 0.000715 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 22 | 22 | AY.20 | 0.000855 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 22 | 22 | B.1.1.464 | 0.032401 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 22 | 22 | B.1.351 | 0.000654 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 20 | 20 | B.1.160.14 | 0.042373 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 19 | 19 | AY.45 | 0.002312 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 18 | 18 | B.1.221 | 0.001279 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 18 | 18 | B.1.466.2 | 0.007042 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 17 | 17 | B.1.554 | 0.07489 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 16 | 16 | B.1.1.348 | 0.012739 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 15 | 15 | AY.75 | 0.00084 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 15 | 15 | B.1.177.60 | 0.003277 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 15 | 15 | B.1.243 | 0.001044 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 14 | 14 | AY.100 | 0.000644 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 14 | 14 | C.36.3 | 0.007941 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 14 | 14 | P.1.7 | 0.00447 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 13 | 13 | AY.46 | 0.001353 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 13 | 13 | B.1.1.222 | 0.002652 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 13 | 13 | B.1.1.388 | 0.590909 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 13 | 13 | P.1.17 | 0.002103 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 13 | 13 | Q.8 | 0.002144 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 12 | 12 | B.1.525 | 0.001358 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 11 | 11 | AY.105 | 0.007074 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 11 | 11 | AY.13 | 0.001771 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 11 | 11 | AY.41 | 0.003233 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 10 | 10 | AY.113 | 0.001424 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 10 | 10 | AY.117 | 0.000845 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 10 | 10 | AY.29 | 0.000158 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 10 | 10 | AY.42 | 0.000402 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 10 | 10 | B.1.1.291 | 0.007424 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 10 | 10 | B.1.1.39 | 0.005097 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 8 | 8 | AY.33 | 0.000534 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 8 | 8 | AY.4.5 | 0.00086 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 8 | 8 | AY.63 | 0.003095 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 8 | 8 | AY.69 | 0.001493 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 8 | 8 | B | 0.001022 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 8 | 8 | B.1.234 | 0.001056 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 8 | 8 | B.1.258 | 0.000532 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 7 | 7 | AY.85 | 0.00299 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 7 | 7 | B.1.177.81 | 0.001325 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 7 | 7 | B.1.621 | 0.00062 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 7 | 7 | N.5 | 0.012367 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 7 | 7 | Z.1 | 0.020231 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 6 | 6 | AY.30 | 0.002374 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 6 | 6 | AY.70 | 0.001251 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 6 | 6 | AY.98.1 | 0.000291 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 6 | 6 | B.1.1.25 | 0.003411 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 6 | 6 | B.1.1.28 | 0.001867 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 6 | 6 | B.1.1.284 | 0.000644 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 6 | 6 | B.1.177.21 | 0.000459 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 6 | 6 | B.1.596 | 0.000523 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 6 | 6 | B.1.599 | 0.021898 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 6 | 6 | B.1.609 | 0.002876 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 6 | 6 | B.1.637 | 0.000438 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 6 | 6 | R.1 | 0.00054 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 5 | 5 | A | 0.001935 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 5 | 5 | AY.110 | 0.000563 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 5 | 5 | AY.119 | 0.000177 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 5 | 5 | AY.3.1 | 0.000426 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 5 | 5 | AY.39.1 | 0.000198 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 5 | 5 | AY.6 | 0.000206 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 5 | 5 | AY.7.2 | 0.002796 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 5 | 5 | AY.9 | 0.000338 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 5 | 5 | B.1.241 | 0.004058 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 5 | 5 | B.1.258.17 | 0.00052 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 5 | 5 | B.1.427 | 0.000252 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 5 | 5 | B.1.575 | 0.001517 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 5 | 5 | B.40 | 0.001821 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 5 | 5 | P.1.10 | 0.001347 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 5 | 5 | P.1.14 | 0.000239 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 4 | 4 | AY.111 | 0.000733 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 4 | 4 | AY.116.1 | 0.001246 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 4 | 4 | AY.23 | 0.000279 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 4 | 4 | AY.36 | 0.000593 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 4 | 4 | AY.75.1 | 0.000721 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 4 | 4 | AY.9.2 | 0.000147 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 4 | 4 | B.1.1.352 | 0.125 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 4 | 4 | B.1.36.38 | 0.006568 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 4 | 4 | D.2 | 0.0003 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 4 | 4 | P.1.12 | 0.001936 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 4 | 4 | P.2 | 0.000747 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | AY.10 | 0.00159 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | AY.116 | 0.00086 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | AY.118 | 0.000188 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | AY.120.1 | 0.000963 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | AY.54 | 0.000286 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | AY.59 | 0.001589 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | AY.61 | 0.000314 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | AY.68 | 0.000821 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | AY.99.2 | 0.000276 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | AZ.5 | 0.010526 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | B.1.1.186 | 0.010309 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | B.1.1.192 | 0.006928 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | B.1.1.207 | 0.003546 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | B.1.1.316 | 0.002775 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | B.1.1.317 | 0.001235 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | B.1.1.83 | 0.00813 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | B.1.177.77 | 0.002179 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | B.1.206 | 0.002447 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | B.1.416 | 0.003807 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 3 | 3 | B.1.582 | 0.001472 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | AY.1 | 0.000791 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | AY.120 | 0.000074 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | AY.23.1 | 0.000835 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | AY.4.2.1 | 0.000298 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | AY.46.4 | 0.000329 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | AY.46.5 | 0.000397 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | AY.46.6 | 0.000144 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | AY.5.4 | 0.000553 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | AY.52 | 0.001629 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | AY.9.1 | 0.000167 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | AY.98 | 0.000158 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.1.10 | 0.00223 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.1.117 | 0.019417 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.1.220 | 0.003717 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.1.282 | 0.023256 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.1.306 | 0.000877 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.1.318 | 0.000604 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.1.354 | 0.008772 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.1.372 | 0.001377 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.1.374 | 0.004751 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.1.409 | 0.005666 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.1.524 | 0.041667 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.177.15 | 0.001262 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.177.33 | 0.003289 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.177.38 | 0.020833 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.177.44 | 0.001038 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.311 | 0.000549 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.36.31 | 0.003503 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.438.1 | 0.000215 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.499 | 0.002101 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.568 | 0.002222 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.602 | 0.013072 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | B.1.621.1 | 0.001012 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | P.1.15 | 0.000465 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | P.1.2 | 0.002312 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 2 | 2 | Q.3 | 0.00029 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | A.2.4 | 0.003367 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | A.21 | 0.00277 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | A.22 | 0.066667 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | A.25 | 0.018182 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | A.27 | 0.001656 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | AY.109 | 0.00074 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | AY.121 | 0.000135 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | AY.37 | 0.000316 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | AY.4.4 | 0.000409 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | AY.58 | 0.000907 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | AY.66 | 0.00107 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | AY.67 | 0.000464 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | AY.7 | 0.000196 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | AY.71 | 0.000475 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | AY.74 | 0.000116 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | AY.84 | 0.000437 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.1 | 0.000327 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.135 | 0.004695 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.148 | 0.008772 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.153 | 0.001095 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.157 | 0.000913 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.210 | 0.005714 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.214 | 0.000055 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.216 | 0.00089 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.274 | 0.005051 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.277 | 0.000759 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.33 | 0.000421 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.37 | 0.000193 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.398 | 0.003226 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.402 | 0.011111 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.411 | 0.014706 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.416 | 0.000905 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.448 | 0.002033 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.485 | 0.016667 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.518 | 0.006329 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.52 | 0.012195 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.521 | 0.005348 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.523 | 0.001563 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.528 | 0.004808 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.1.61 | 0.008772 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.13 | 0.002375 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.149 | 0.003425 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.177.10 | 0.000878 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.177.11 | 0.001698 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.177.16 | 0.000664 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.177.20 | 0.001517 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.177.54 | 0.000606 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.177.57 | 0.000281 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.177.75 | 0.001041 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.177.79 | 0.002342 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.195 | 0.005025 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.22 | 0.001318 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.232 | 0.000537 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.240 | 0.000216 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.258.4 | 0.003448 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.279 | 0.000514 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.324 | 0.001605 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.349 | 0.000715 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.351.2 | 0.000303 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.351.5 | 0.0006 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.359 | 0.022727 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.36.29 | 0.000517 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.36.37 | 0.002778 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.36.39 | 0.002217 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.36.8 | 0.001 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.367 | 0.000792 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.369 | 0.000285 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.371 | 0.001122 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.389 | 0.001002 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.398 | 0.002976 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.403 | 0.003268 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.426 | 0.001009 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.432 | 0.011236 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.509 | 0.000866 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.530 | 0.007143 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.537 | 0.02 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.543 | 0.01 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.560 | 0.00463 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.564 | 0.000426 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.574 | 0.002151 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.576 | 0.000907 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.611 | 0.04 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.617.1 | 0.000129 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.625 | 0.002353 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.634 | 0.003425 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.1.69 | 0.035714 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | B.52 | 0.010101 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | C.35 | 0.000774 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | P.1.9 | 0.004808 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | Q.1 | 0.000126 |
ORF1ab/nsp3 | 1103 | P1103S | Cca | Tca | 1 | 1 | Q.2 | 0.000613 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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