CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = P1103S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31103P1103SP1921SnonsynCcaTca8603860316026-6028

Details of the mutation P1103S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31103P1103SCcaTca86038603All0.001645
ORF1ab/nsp31103P1103SCcaTca15271527AY.40.002377
ORF1ab/nsp31103P1103SCcaTca14361436B.1.1.70.001286
ORF1ab/nsp31103P1103SCcaTca12341234AY.260.034935
ORF1ab/nsp31103P1103SCcaTca396396AY.250.002382
ORF1ab/nsp31103P1103SCcaTca387387B.1.5260.009096
ORF1ab/nsp31103P1103SCcaTca361361AY.430.001599
ORF1ab/nsp31103P1103SCcaTca285285B.1.4970.089707
ORF1ab/nsp31103P1103SCcaTca154154B.1.177.90.20506
ORF1ab/nsp31103P1103SCcaTca151151B.1.617.20.000569
ORF1ab/nsp31103P1103SCcaTca150150B.1.10.002721
ORF1ab/nsp31103P1103SCcaTca145145AY.390.003583
ORF1ab/nsp31103P1103SCcaTca115115B.1.1600.003587
ORF1ab/nsp31103P1103SCcaTca113113B.1.1770.001488
ORF1ab/nsp31103P1103SCcaTca9696B.10.000879
ORF1ab/nsp31103P1103SCcaTca9595P.10.001497
ORF1ab/nsp31103P1103SCcaTca9292B.1.20.00081
ORF1ab/nsp31103P1103SCcaTca9191AY.1030.000565
ORF1ab/nsp31103P1103SCcaTca9191B.1.595.40.664234
ORF1ab/nsp31103P1103SCcaTca6767AY.440.000408
ORF1ab/nsp31103P1103SCcaTca6767AY.50.001383
ORF1ab/nsp31103P1103SCcaTca6161B.1.1.5190.002422
ORF1ab/nsp31103P1103SCcaTca5656B.1.5950.014614
ORF1ab/nsp31103P1103SCcaTca5353B.1.360.007733
ORF1ab/nsp31103P1103SCcaTca5151B.1.1.700.017394
ORF1ab/nsp31103P1103SCcaTca4747AY.30.000467
ORF1ab/nsp31103P1103SCcaTca4646B.1.1.3260.080986
ORF1ab/nsp31103P1103SCcaTca4343AY.4.20.000933
ORF1ab/nsp31103P1103SCcaTca3838B.1.1.2890.079167
ORF1ab/nsp31103P1103SCcaTca3636AY.270.00233
ORF1ab/nsp31103P1103SCcaTca3636AY.800.040632
ORF1ab/nsp31103P1103SCcaTca3535B.1.1.3690.015618
ORF1ab/nsp31103P1103SCcaTca3535B.1.4290.000824
ORF1ab/nsp31103P1103SCcaTca3030AY.1020.000795
ORF1ab/nsp31103P1103SCcaTca2424C.370.002786
ORF1ab/nsp31103P1103SCcaTca2323AY.470.000715
ORF1ab/nsp31103P1103SCcaTca2222AY.200.000855
ORF1ab/nsp31103P1103SCcaTca2222B.1.1.4640.032401
ORF1ab/nsp31103P1103SCcaTca2222B.1.3510.000654
ORF1ab/nsp31103P1103SCcaTca2020B.1.160.140.042373
ORF1ab/nsp31103P1103SCcaTca1919AY.450.002312
ORF1ab/nsp31103P1103SCcaTca1818B.1.2210.001279
ORF1ab/nsp31103P1103SCcaTca1818B.1.466.20.007042
ORF1ab/nsp31103P1103SCcaTca1717B.1.5540.07489
ORF1ab/nsp31103P1103SCcaTca1616B.1.1.3480.012739
ORF1ab/nsp31103P1103SCcaTca1515AY.750.00084
ORF1ab/nsp31103P1103SCcaTca1515B.1.177.600.003277
ORF1ab/nsp31103P1103SCcaTca1515B.1.2430.001044
ORF1ab/nsp31103P1103SCcaTca1414AY.1000.000644
ORF1ab/nsp31103P1103SCcaTca1414C.36.30.007941
ORF1ab/nsp31103P1103SCcaTca1414P.1.70.00447
ORF1ab/nsp31103P1103SCcaTca1313AY.460.001353
ORF1ab/nsp31103P1103SCcaTca1313B.1.1.2220.002652
ORF1ab/nsp31103P1103SCcaTca1313B.1.1.3880.590909
ORF1ab/nsp31103P1103SCcaTca1313P.1.170.002103
ORF1ab/nsp31103P1103SCcaTca1313Q.80.002144
ORF1ab/nsp31103P1103SCcaTca1212B.1.5250.001358
ORF1ab/nsp31103P1103SCcaTca1111AY.1050.007074
ORF1ab/nsp31103P1103SCcaTca1111AY.130.001771
ORF1ab/nsp31103P1103SCcaTca1111AY.410.003233
ORF1ab/nsp31103P1103SCcaTca1010AY.1130.001424
ORF1ab/nsp31103P1103SCcaTca1010AY.1170.000845
ORF1ab/nsp31103P1103SCcaTca1010AY.290.000158
ORF1ab/nsp31103P1103SCcaTca1010AY.420.000402
ORF1ab/nsp31103P1103SCcaTca1010B.1.1.2910.007424
ORF1ab/nsp31103P1103SCcaTca1010B.1.1.390.005097
ORF1ab/nsp31103P1103SCcaTca88AY.330.000534
ORF1ab/nsp31103P1103SCcaTca88AY.4.50.00086
ORF1ab/nsp31103P1103SCcaTca88AY.630.003095
ORF1ab/nsp31103P1103SCcaTca88AY.690.001493
ORF1ab/nsp31103P1103SCcaTca88B0.001022
ORF1ab/nsp31103P1103SCcaTca88B.1.2340.001056
ORF1ab/nsp31103P1103SCcaTca88B.1.2580.000532
ORF1ab/nsp31103P1103SCcaTca77AY.850.00299
ORF1ab/nsp31103P1103SCcaTca77B.1.177.810.001325
ORF1ab/nsp31103P1103SCcaTca77B.1.6210.00062
ORF1ab/nsp31103P1103SCcaTca77N.50.012367
ORF1ab/nsp31103P1103SCcaTca77Z.10.020231
ORF1ab/nsp31103P1103SCcaTca66AY.300.002374
ORF1ab/nsp31103P1103SCcaTca66AY.700.001251
ORF1ab/nsp31103P1103SCcaTca66AY.98.10.000291
ORF1ab/nsp31103P1103SCcaTca66B.1.1.250.003411
ORF1ab/nsp31103P1103SCcaTca66B.1.1.280.001867
ORF1ab/nsp31103P1103SCcaTca66B.1.1.2840.000644
ORF1ab/nsp31103P1103SCcaTca66B.1.177.210.000459
ORF1ab/nsp31103P1103SCcaTca66B.1.5960.000523
ORF1ab/nsp31103P1103SCcaTca66B.1.5990.021898
ORF1ab/nsp31103P1103SCcaTca66B.1.6090.002876
ORF1ab/nsp31103P1103SCcaTca66B.1.6370.000438
ORF1ab/nsp31103P1103SCcaTca66R.10.00054
ORF1ab/nsp31103P1103SCcaTca55A0.001935
ORF1ab/nsp31103P1103SCcaTca55AY.1100.000563
ORF1ab/nsp31103P1103SCcaTca55AY.1190.000177
ORF1ab/nsp31103P1103SCcaTca55AY.3.10.000426
ORF1ab/nsp31103P1103SCcaTca55AY.39.10.000198
ORF1ab/nsp31103P1103SCcaTca55AY.60.000206
ORF1ab/nsp31103P1103SCcaTca55AY.7.20.002796
ORF1ab/nsp31103P1103SCcaTca55AY.90.000338
ORF1ab/nsp31103P1103SCcaTca55B.1.2410.004058
ORF1ab/nsp31103P1103SCcaTca55B.1.258.170.00052
ORF1ab/nsp31103P1103SCcaTca55B.1.4270.000252
ORF1ab/nsp31103P1103SCcaTca55B.1.5750.001517
ORF1ab/nsp31103P1103SCcaTca55B.400.001821
ORF1ab/nsp31103P1103SCcaTca55P.1.100.001347
ORF1ab/nsp31103P1103SCcaTca55P.1.140.000239
ORF1ab/nsp31103P1103SCcaTca44AY.1110.000733
ORF1ab/nsp31103P1103SCcaTca44AY.116.10.001246
ORF1ab/nsp31103P1103SCcaTca44AY.230.000279
ORF1ab/nsp31103P1103SCcaTca44AY.360.000593
ORF1ab/nsp31103P1103SCcaTca44AY.75.10.000721
ORF1ab/nsp31103P1103SCcaTca44AY.9.20.000147
ORF1ab/nsp31103P1103SCcaTca44B.1.1.3520.125
ORF1ab/nsp31103P1103SCcaTca44B.1.36.380.006568
ORF1ab/nsp31103P1103SCcaTca44D.20.0003
ORF1ab/nsp31103P1103SCcaTca44P.1.120.001936
ORF1ab/nsp31103P1103SCcaTca44P.20.000747
ORF1ab/nsp31103P1103SCcaTca33AY.100.00159
ORF1ab/nsp31103P1103SCcaTca33AY.1160.00086
ORF1ab/nsp31103P1103SCcaTca33AY.1180.000188
ORF1ab/nsp31103P1103SCcaTca33AY.120.10.000963
ORF1ab/nsp31103P1103SCcaTca33AY.540.000286
ORF1ab/nsp31103P1103SCcaTca33AY.590.001589
ORF1ab/nsp31103P1103SCcaTca33AY.610.000314
ORF1ab/nsp31103P1103SCcaTca33AY.680.000821
ORF1ab/nsp31103P1103SCcaTca33AY.99.20.000276
ORF1ab/nsp31103P1103SCcaTca33AZ.50.010526
ORF1ab/nsp31103P1103SCcaTca33B.1.1.1860.010309
ORF1ab/nsp31103P1103SCcaTca33B.1.1.1920.006928
ORF1ab/nsp31103P1103SCcaTca33B.1.1.2070.003546
ORF1ab/nsp31103P1103SCcaTca33B.1.1.3160.002775
ORF1ab/nsp31103P1103SCcaTca33B.1.1.3170.001235
ORF1ab/nsp31103P1103SCcaTca33B.1.1.830.00813
ORF1ab/nsp31103P1103SCcaTca33B.1.177.770.002179
ORF1ab/nsp31103P1103SCcaTca33B.1.2060.002447
ORF1ab/nsp31103P1103SCcaTca33B.1.4160.003807
ORF1ab/nsp31103P1103SCcaTca33B.1.5820.001472
ORF1ab/nsp31103P1103SCcaTca22AY.10.000791
ORF1ab/nsp31103P1103SCcaTca22AY.1200.000074
ORF1ab/nsp31103P1103SCcaTca22AY.23.10.000835
ORF1ab/nsp31103P1103SCcaTca22AY.4.2.10.000298
ORF1ab/nsp31103P1103SCcaTca22AY.46.40.000329
ORF1ab/nsp31103P1103SCcaTca22AY.46.50.000397
ORF1ab/nsp31103P1103SCcaTca22AY.46.60.000144
ORF1ab/nsp31103P1103SCcaTca22AY.5.40.000553
ORF1ab/nsp31103P1103SCcaTca22AY.520.001629
ORF1ab/nsp31103P1103SCcaTca22AY.9.10.000167
ORF1ab/nsp31103P1103SCcaTca22AY.980.000158
ORF1ab/nsp31103P1103SCcaTca22B.1.1.100.00223
ORF1ab/nsp31103P1103SCcaTca22B.1.1.1170.019417
ORF1ab/nsp31103P1103SCcaTca22B.1.1.2200.003717
ORF1ab/nsp31103P1103SCcaTca22B.1.1.2820.023256
ORF1ab/nsp31103P1103SCcaTca22B.1.1.3060.000877
ORF1ab/nsp31103P1103SCcaTca22B.1.1.3180.000604
ORF1ab/nsp31103P1103SCcaTca22B.1.1.3540.008772
ORF1ab/nsp31103P1103SCcaTca22B.1.1.3720.001377
ORF1ab/nsp31103P1103SCcaTca22B.1.1.3740.004751
ORF1ab/nsp31103P1103SCcaTca22B.1.1.4090.005666
ORF1ab/nsp31103P1103SCcaTca22B.1.1.5240.041667
ORF1ab/nsp31103P1103SCcaTca22B.1.177.150.001262
ORF1ab/nsp31103P1103SCcaTca22B.1.177.330.003289
ORF1ab/nsp31103P1103SCcaTca22B.1.177.380.020833
ORF1ab/nsp31103P1103SCcaTca22B.1.177.440.001038
ORF1ab/nsp31103P1103SCcaTca22B.1.3110.000549
ORF1ab/nsp31103P1103SCcaTca22B.1.36.310.003503
ORF1ab/nsp31103P1103SCcaTca22B.1.438.10.000215
ORF1ab/nsp31103P1103SCcaTca22B.1.4990.002101
ORF1ab/nsp31103P1103SCcaTca22B.1.5680.002222
ORF1ab/nsp31103P1103SCcaTca22B.1.6020.013072
ORF1ab/nsp31103P1103SCcaTca22B.1.621.10.001012
ORF1ab/nsp31103P1103SCcaTca22P.1.150.000465
ORF1ab/nsp31103P1103SCcaTca22P.1.20.002312
ORF1ab/nsp31103P1103SCcaTca22Q.30.00029
ORF1ab/nsp31103P1103SCcaTca11A.2.40.003367
ORF1ab/nsp31103P1103SCcaTca11A.210.00277
ORF1ab/nsp31103P1103SCcaTca11A.220.066667
ORF1ab/nsp31103P1103SCcaTca11A.250.018182
ORF1ab/nsp31103P1103SCcaTca11A.270.001656
ORF1ab/nsp31103P1103SCcaTca11AY.1090.00074
ORF1ab/nsp31103P1103SCcaTca11AY.1210.000135
ORF1ab/nsp31103P1103SCcaTca11AY.370.000316
ORF1ab/nsp31103P1103SCcaTca11AY.4.40.000409
ORF1ab/nsp31103P1103SCcaTca11AY.580.000907
ORF1ab/nsp31103P1103SCcaTca11AY.660.00107
ORF1ab/nsp31103P1103SCcaTca11AY.670.000464
ORF1ab/nsp31103P1103SCcaTca11AY.70.000196
ORF1ab/nsp31103P1103SCcaTca11AY.710.000475
ORF1ab/nsp31103P1103SCcaTca11AY.740.000116
ORF1ab/nsp31103P1103SCcaTca11AY.840.000437
ORF1ab/nsp31103P1103SCcaTca11B.1.1.10.000327
ORF1ab/nsp31103P1103SCcaTca11B.1.1.1350.004695
ORF1ab/nsp31103P1103SCcaTca11B.1.1.1480.008772
ORF1ab/nsp31103P1103SCcaTca11B.1.1.1530.001095
ORF1ab/nsp31103P1103SCcaTca11B.1.1.1570.000913
ORF1ab/nsp31103P1103SCcaTca11B.1.1.2100.005714
ORF1ab/nsp31103P1103SCcaTca11B.1.1.2140.000055
ORF1ab/nsp31103P1103SCcaTca11B.1.1.2160.00089
ORF1ab/nsp31103P1103SCcaTca11B.1.1.2740.005051
ORF1ab/nsp31103P1103SCcaTca11B.1.1.2770.000759
ORF1ab/nsp31103P1103SCcaTca11B.1.1.330.000421
ORF1ab/nsp31103P1103SCcaTca11B.1.1.370.000193
ORF1ab/nsp31103P1103SCcaTca11B.1.1.3980.003226
ORF1ab/nsp31103P1103SCcaTca11B.1.1.4020.011111
ORF1ab/nsp31103P1103SCcaTca11B.1.1.4110.014706
ORF1ab/nsp31103P1103SCcaTca11B.1.1.4160.000905
ORF1ab/nsp31103P1103SCcaTca11B.1.1.4480.002033
ORF1ab/nsp31103P1103SCcaTca11B.1.1.4850.016667
ORF1ab/nsp31103P1103SCcaTca11B.1.1.5180.006329
ORF1ab/nsp31103P1103SCcaTca11B.1.1.520.012195
ORF1ab/nsp31103P1103SCcaTca11B.1.1.5210.005348
ORF1ab/nsp31103P1103SCcaTca11B.1.1.5230.001563
ORF1ab/nsp31103P1103SCcaTca11B.1.1.5280.004808
ORF1ab/nsp31103P1103SCcaTca11B.1.1.610.008772
ORF1ab/nsp31103P1103SCcaTca11B.1.130.002375
ORF1ab/nsp31103P1103SCcaTca11B.1.1490.003425
ORF1ab/nsp31103P1103SCcaTca11B.1.177.100.000878
ORF1ab/nsp31103P1103SCcaTca11B.1.177.110.001698
ORF1ab/nsp31103P1103SCcaTca11B.1.177.160.000664
ORF1ab/nsp31103P1103SCcaTca11B.1.177.200.001517
ORF1ab/nsp31103P1103SCcaTca11B.1.177.540.000606
ORF1ab/nsp31103P1103SCcaTca11B.1.177.570.000281
ORF1ab/nsp31103P1103SCcaTca11B.1.177.750.001041
ORF1ab/nsp31103P1103SCcaTca11B.1.177.790.002342
ORF1ab/nsp31103P1103SCcaTca11B.1.1950.005025
ORF1ab/nsp31103P1103SCcaTca11B.1.220.001318
ORF1ab/nsp31103P1103SCcaTca11B.1.2320.000537
ORF1ab/nsp31103P1103SCcaTca11B.1.2400.000216
ORF1ab/nsp31103P1103SCcaTca11B.1.258.40.003448
ORF1ab/nsp31103P1103SCcaTca11B.1.2790.000514
ORF1ab/nsp31103P1103SCcaTca11B.1.3240.001605
ORF1ab/nsp31103P1103SCcaTca11B.1.3490.000715
ORF1ab/nsp31103P1103SCcaTca11B.1.351.20.000303
ORF1ab/nsp31103P1103SCcaTca11B.1.351.50.0006
ORF1ab/nsp31103P1103SCcaTca11B.1.3590.022727
ORF1ab/nsp31103P1103SCcaTca11B.1.36.290.000517
ORF1ab/nsp31103P1103SCcaTca11B.1.36.370.002778
ORF1ab/nsp31103P1103SCcaTca11B.1.36.390.002217
ORF1ab/nsp31103P1103SCcaTca11B.1.36.80.001
ORF1ab/nsp31103P1103SCcaTca11B.1.3670.000792
ORF1ab/nsp31103P1103SCcaTca11B.1.3690.000285
ORF1ab/nsp31103P1103SCcaTca11B.1.3710.001122
ORF1ab/nsp31103P1103SCcaTca11B.1.3890.001002
ORF1ab/nsp31103P1103SCcaTca11B.1.3980.002976
ORF1ab/nsp31103P1103SCcaTca11B.1.4030.003268
ORF1ab/nsp31103P1103SCcaTca11B.1.4260.001009
ORF1ab/nsp31103P1103SCcaTca11B.1.4320.011236
ORF1ab/nsp31103P1103SCcaTca11B.1.5090.000866
ORF1ab/nsp31103P1103SCcaTca11B.1.5300.007143
ORF1ab/nsp31103P1103SCcaTca11B.1.5370.02
ORF1ab/nsp31103P1103SCcaTca11B.1.5430.01
ORF1ab/nsp31103P1103SCcaTca11B.1.5600.00463
ORF1ab/nsp31103P1103SCcaTca11B.1.5640.000426
ORF1ab/nsp31103P1103SCcaTca11B.1.5740.002151
ORF1ab/nsp31103P1103SCcaTca11B.1.5760.000907
ORF1ab/nsp31103P1103SCcaTca11B.1.6110.04
ORF1ab/nsp31103P1103SCcaTca11B.1.617.10.000129
ORF1ab/nsp31103P1103SCcaTca11B.1.6250.002353
ORF1ab/nsp31103P1103SCcaTca11B.1.6340.003425
ORF1ab/nsp31103P1103SCcaTca11B.1.690.035714
ORF1ab/nsp31103P1103SCcaTca11B.520.010101
ORF1ab/nsp31103P1103SCcaTca11C.350.000774
ORF1ab/nsp31103P1103SCcaTca11P.1.90.004808
ORF1ab/nsp31103P1103SCcaTca11Q.10.000126
ORF1ab/nsp31103P1103SCcaTca11Q.20.000613

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.