CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = ORF1ab/nsp3 : Mut = P1103P

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
ORF1ab/nsp31103P1103PP1921PsynccAccG5123640.7109386026-6028
ORF1ab/nsp31103P1103PP1921PsynccAccC5121190.2324226026-6028
ORF1ab/nsp31103P1103PP1921PsynccAccT512290.05664066026-6028

Details of the mutation P1103P within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
ORF1ab/nsp31103P1103PccAccG364512All0.00007
ORF1ab/nsp31103P1103PccAccC119512All0.000023
ORF1ab/nsp31103P1103PccAccT29512All0.000006
ORF1ab/nsp31103P1103PccAccG174174B.1.1.3180.052505
ORF1ab/nsp31103P1103PccAccC88110B.1.617.20.000331
ORF1ab/nsp31103P1103PccAccG20110B.1.617.20.000075
ORF1ab/nsp31103P1103PccAccT2110B.1.617.20.000008
ORF1ab/nsp31103P1103PccAccG6060AY.1030.000373
ORF1ab/nsp31103P1103PccAccG5555B.1.6280.01938
ORF1ab/nsp31103P1103PccAccT514B.1.1.70.000004
ORF1ab/nsp31103P1103PccAccG514B.1.1.70.000004
ORF1ab/nsp31103P1103PccAccC414B.1.1.70.000004
ORF1ab/nsp31103P1103PccAccT49AY.40.000006
ORF1ab/nsp31103P1103PccAccG49AY.40.000006
ORF1ab/nsp31103P1103PccAccC19AY.40.000002
ORF1ab/nsp31103P1103PccAccG88AY.440.000049
ORF1ab/nsp31103P1103PccAccC88AY.46.50.001587
ORF1ab/nsp31103P1103PccAccC36AY.430.000013
ORF1ab/nsp31103P1103PccAccT36AY.430.000013
ORF1ab/nsp31103P1103PccAccG46B.1.1770.000053
ORF1ab/nsp31103P1103PccAccT26B.1.1770.000026
ORF1ab/nsp31103P1103PccAccG55AY.250.00003
ORF1ab/nsp31103P1103PccAccG35B.10.000027
ORF1ab/nsp31103P1103PccAccC15B.10.000009
ORF1ab/nsp31103P1103PccAccT15B.10.000009
ORF1ab/nsp31103P1103PccAccT33AY.30.00003
ORF1ab/nsp31103P1103PccAccG33B.1.177.150.001893
ORF1ab/nsp31103P1103PccAccC220.111111
ORF1ab/nsp31103P1103PccAccG22AY.1020.000053
ORF1ab/nsp31103P1103PccAccG22AY.1200.000074
ORF1ab/nsp31103P1103PccAccC22AY.4.50.000215
ORF1ab/nsp31103P1103PccAccC22AY.470.000062
ORF1ab/nsp31103P1103PccAccT12B.1.10.000018
ORF1ab/nsp31103P1103PccAccG12B.1.10.000018
ORF1ab/nsp31103P1103PccAccG22B.1.1.4340.000697
ORF1ab/nsp31103P1103PccAccG22B.1.2210.000142
ORF1ab/nsp31103P1103PccAccG22D.20.00015
ORF1ab/nsp31103P1103PccAccT22P.10.000032
ORF1ab/nsp31103P1103PccAccT11A0.000387
ORF1ab/nsp31103P1103PccAccG11AY.1130.000142
ORF1ab/nsp31103P1103PccAccC11AY.1170.000085
ORF1ab/nsp31103P1103PccAccT11AY.1180.000063
ORF1ab/nsp31103P1103PccAccG11AY.140.000088
ORF1ab/nsp31103P1103PccAccG11AY.260.000028
ORF1ab/nsp31103P1103PccAccC11AY.290.000016
ORF1ab/nsp31103P1103PccAccC11AY.390.000025
ORF1ab/nsp31103P1103PccAccC11AY.460.000104
ORF1ab/nsp31103P1103PccAccC11AY.570.000656
ORF1ab/nsp31103P1103PccAccG11AY.60.000041
ORF1ab/nsp31103P1103PccAccG11AY.600.000938
ORF1ab/nsp31103P1103PccAccG11AY.650.000533
ORF1ab/nsp31103P1103PccAccC11AY.80.000606
ORF1ab/nsp31103P1103PccAccT11B.1.1.2940.001266
ORF1ab/nsp31103P1103PccAccT11B.1.1.3710.010417
ORF1ab/nsp31103P1103PccAccG11B.1.1150.021739
ORF1ab/nsp31103P1103PccAccT11B.1.177.60.000977
ORF1ab/nsp31103P1103PccAccC11B.1.2430.00007
ORF1ab/nsp31103P1103PccAccG11B.1.3510.00003
ORF1ab/nsp31103P1103PccAccG11B.1.617.10.000129
ORF1ab/nsp31103P1103PccAccG11C.370.000116
ORF1ab/nsp31103P1103PccAccT11N.50.001767
ORF1ab/nsp31103P1103PccAccC11P.20.000187
ORF1ab/nsp31103P1103PccAccG11Q.10.000126
ORF1ab/nsp31103P1103PccAccG11Q.80.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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